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Protein

Uncharacterized HTH-type transcriptional regulator YfjR

Gene

yfjR

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi28 – 47H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

  • regulation of single-species biofilm formation Source: EcoCyc
  • transcription, DNA-templated Source: UniProtKB-KW

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciEcoCyc:G7369-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YfjR
Gene namesi
Name:yfjR
Ordered Locus Names:b2634, JW2615
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13204 yfjR

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000502731 – 233Uncharacterized HTH-type transcriptional regulator YfjRAdd BLAST233

Proteomic databases

PaxDbiP52133
PRIDEiP52133

Interactioni

Protein-protein interaction databases

BioGridi4260626, 159 interactors
IntActiP52133, 3 interactors
STRINGi316385.ECDH10B_2800

Structurei

3D structure databases

ProteinModelPortaliP52133
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini11 – 73HTH deoR-typePROSITE-ProRule annotationAdd BLAST63

Phylogenomic databases

eggNOGiENOG4108KZE Bacteria
COG2378 LUCA
HOGENOMiHOG000124724
OMAiESPCLIW

Family and domain databases

InterProiView protein in InterPro
IPR001034 DeoR_HTH
IPR018356 Tscrpt_reg_HTH_DeoR_CS
IPR026881 WYL_dom
PfamiView protein in Pfam
PF08220 HTH_DeoR, 1 hit
PF13280 WYL, 1 hit
PROSITEiView protein in PROSITE
PS00894 HTH_DEOR_1, 1 hit
PS51000 HTH_DEOR_2, 1 hit

Sequencei

Sequence statusi: Complete.

P52133-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTQAERRHDR LAVRLSLIIS RLVAGETLSV RKLAAEFGVS VRTLRRDFRE
60 70 80 90 100
RLMYLDLEYQ SGYCRLRTAG SEMQMVPDVL IFAHRSGLAG LFPGLDRRLV
110 120 130 140 150
NALLMCDESP CVIAPANPVP SPSGALSFWR LIQAITGRRR VTLIAEGRRC
160 170 180 190 200
ERLAPCRLLI HQQTWYLVAE HEGHIAVFTL DEIHLIQPLQ ETFRRNDSLC
210 220 230
RLVEDPVFIQ ALPHFRFIQH SLLTFVPADS PPE
Length:233
Mass (Da):26,606
Last modified:October 1, 1996 - v1
Checksum:iC214EF6C9BAD8FFE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U36840 Genomic DNA Translation: AAA79803.1
U00096 Genomic DNA Translation: AAC75682.1
AP009048 Genomic DNA Translation: BAE76769.1
PIRiT08646
RefSeqiNP_417123.1, NC_000913.3
WP_000189409.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC75682; AAC75682; b2634
BAE76769; BAE76769; BAE76769
GeneIDi947309
KEGGiecj:JW2615
eco:b2634
PATRICifig|1411691.4.peg.4105

Similar proteinsi

Entry informationi

Entry nameiYFJR_ECOLI
AccessioniPrimary (citable) accession number: P52133
Secondary accession number(s): Q2MAD7
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: October 1, 1996
Last modified: March 28, 2018
This is version 119 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health