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Protein

Uncharacterized HTH-type transcriptional regulator YfjR

Gene

yfjR

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi28 – 47H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

  • regulation of single-species biofilm formation Source: EcoCyc
  • transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciEcoCyc:G7369-MONOMER.
ECOL316407:JW2615-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YfjR
Gene namesi
Name:yfjR
Ordered Locus Names:b2634, JW2615
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13204. yfjR.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000502731 – 233Uncharacterized HTH-type transcriptional regulator YfjRAdd BLAST233

Proteomic databases

PaxDbiP52133.
PRIDEiP52133.

Interactioni

Protein-protein interaction databases

BioGridi4260626. 159 interactors.
IntActiP52133. 3 interactors.
STRINGi511145.b2634.

Structurei

3D structure databases

ProteinModelPortaliP52133.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini11 – 73HTH deoR-typePROSITE-ProRule annotationAdd BLAST63

Sequence similaritiesi

Contains 1 HTH deoR-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4108KZE. Bacteria.
COG2378. LUCA.
HOGENOMiHOG000124724.
OMAiSPCLIWH.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR001034. DeoR_HTH.
IPR018356. Tscrpt_reg_HTH_DeoR_CS.
IPR011991. WHTH_DNA-bd_dom.
IPR026881. WYL_dom.
[Graphical view]
PfamiPF08220. HTH_DeoR. 1 hit.
PF13280. WYL. 1 hit.
[Graphical view]
PROSITEiPS00894. HTH_DEOR_1. 1 hit.
PS51000. HTH_DEOR_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P52133-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTQAERRHDR LAVRLSLIIS RLVAGETLSV RKLAAEFGVS VRTLRRDFRE
60 70 80 90 100
RLMYLDLEYQ SGYCRLRTAG SEMQMVPDVL IFAHRSGLAG LFPGLDRRLV
110 120 130 140 150
NALLMCDESP CVIAPANPVP SPSGALSFWR LIQAITGRRR VTLIAEGRRC
160 170 180 190 200
ERLAPCRLLI HQQTWYLVAE HEGHIAVFTL DEIHLIQPLQ ETFRRNDSLC
210 220 230
RLVEDPVFIQ ALPHFRFIQH SLLTFVPADS PPE
Length:233
Mass (Da):26,606
Last modified:October 1, 1996 - v1
Checksum:iC214EF6C9BAD8FFE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U36840 Genomic DNA. Translation: AAA79803.1.
U00096 Genomic DNA. Translation: AAC75682.1.
AP009048 Genomic DNA. Translation: BAE76769.1.
PIRiT08646.
RefSeqiNP_417123.1. NC_000913.3.
WP_000189409.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75682; AAC75682; b2634.
BAE76769; BAE76769; BAE76769.
GeneIDi947309.
KEGGiecj:JW2615.
eco:b2634.
PATRICi32120659. VBIEscCol129921_2728.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U36840 Genomic DNA. Translation: AAA79803.1.
U00096 Genomic DNA. Translation: AAC75682.1.
AP009048 Genomic DNA. Translation: BAE76769.1.
PIRiT08646.
RefSeqiNP_417123.1. NC_000913.3.
WP_000189409.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP52133.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260626. 159 interactors.
IntActiP52133. 3 interactors.
STRINGi511145.b2634.

Proteomic databases

PaxDbiP52133.
PRIDEiP52133.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75682; AAC75682; b2634.
BAE76769; BAE76769; BAE76769.
GeneIDi947309.
KEGGiecj:JW2615.
eco:b2634.
PATRICi32120659. VBIEscCol129921_2728.

Organism-specific databases

EchoBASEiEB2996.
EcoGeneiEG13204. yfjR.

Phylogenomic databases

eggNOGiENOG4108KZE. Bacteria.
COG2378. LUCA.
HOGENOMiHOG000124724.
OMAiSPCLIWH.

Enzyme and pathway databases

BioCyciEcoCyc:G7369-MONOMER.
ECOL316407:JW2615-MONOMER.

Miscellaneous databases

PROiP52133.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR001034. DeoR_HTH.
IPR018356. Tscrpt_reg_HTH_DeoR_CS.
IPR011991. WHTH_DNA-bd_dom.
IPR026881. WYL_dom.
[Graphical view]
PfamiPF08220. HTH_DeoR. 1 hit.
PF13280. WYL. 1 hit.
[Graphical view]
PROSITEiPS00894. HTH_DEOR_1. 1 hit.
PS51000. HTH_DEOR_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYFJR_ECOLI
AccessioniPrimary (citable) accession number: P52133
Secondary accession number(s): Q2MAD7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: October 1, 1996
Last modified: November 2, 2016
This is version 112 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.