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Protein

Uncharacterized ferredoxin-like protein YfhL

Gene

yfhL

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi9 – 91Iron-sulfur 1 (4Fe-4S)By similarity
Metal bindingi12 – 121Iron-sulfur 1 (4Fe-4S)By similarity
Metal bindingi15 – 151Iron-sulfur 1 (4Fe-4S)By similarity
Metal bindingi19 – 191Iron-sulfur 2 (4Fe-4S)By similarity
Metal bindingi38 – 381Iron-sulfur 2 (4Fe-4S)By similarity
Metal bindingi41 – 411Iron-sulfur 2 (4Fe-4S)By similarity
Metal bindingi50 – 501Iron-sulfur 2 (4Fe-4S)By similarity
Metal bindingi54 – 541Iron-sulfur 1 (4Fe-4S)By similarity

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

4Fe-4S, Iron, Iron-sulfur, Metal-binding

Enzyme and pathway databases

BioCyciEcoCyc:G7346-MONOMER.
ECOL316407:JW2546-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized ferredoxin-like protein YfhL
Gene namesi
Name:yfhL
Ordered Locus Names:b2562, JW2546
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13215. yfhL.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 8686Uncharacterized ferredoxin-like protein YfhLPRO_0000159300Add
BLAST

Proteomic databases

PaxDbiP52102.

Interactioni

Protein-protein interaction databases

BioGridi4260595. 11 interactions.
IntActiP52102. 12 interactions.
STRINGi511145.b2562.

Structurei

Secondary structure

1
86
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi3 – 53Combined sources
Turni14 – 185Combined sources
Beta strandi28 – 303Combined sources
Helixi35 – 373Combined sources
Turni40 – 445Combined sources
Helixi49 – 535Combined sources
Beta strandi59 – 613Combined sources
Helixi69 – 8012Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2ZVSX-ray1.65A/B/C2-86[»]
ProteinModelPortaliP52102.
SMRiP52102. Positions 2-82.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP52102.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini2 – 29284Fe-4S ferredoxin-type 1PROSITE-ProRule annotationAdd
BLAST
Domaini29 – 65374Fe-4S ferredoxin-type 2PROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 2 4Fe-4S ferredoxin-type domains.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiENOG4105K5D. Bacteria.
COG1145. LUCA.
HOGENOMiHOG000044615.
InParanoidiP52102.
OMAiCPVECII.
OrthoDBiEOG6CVV7G.
PhylomeDBiP52102.

Family and domain databases

InterProiIPR017896. 4Fe4S_Fe-S-bd.
IPR017900. 4Fe4S_Fe_S_CS.
[Graphical view]
PfamiPF00037. Fer4. 1 hit.
[Graphical view]
PROSITEiPS00198. 4FE4S_FER_1. 1 hit.
PS51379. 4FE4S_FER_2. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P52102-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MALLITKKCI NCDMCEPECP NEAISMGDHI YEINSDKCTE CVGHYETPTC
60 70 80
QKVCPIPNTI VKDPAHVETE EQLWDKFVLM HHADKI
Length:86
Mass (Da):9,791
Last modified:October 1, 1996 - v1
Checksum:i202CFFA35FEA15DD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U36841 Genomic DNA. Translation: AAA79824.1.
U00096 Genomic DNA. Translation: AAC75615.1.
AP009048 Genomic DNA. Translation: BAE76738.1.
PIRiA65034.
RefSeqiNP_417057.1. NC_000913.3.
WP_001196283.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75615; AAC75615; b2562.
BAE76738; BAE76738; BAE76738.
GeneIDi947031.
KEGGiecj:JW2546.
eco:b2562.
PATRICi32120523. VBIEscCol129921_2664.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U36841 Genomic DNA. Translation: AAA79824.1.
U00096 Genomic DNA. Translation: AAC75615.1.
AP009048 Genomic DNA. Translation: BAE76738.1.
PIRiA65034.
RefSeqiNP_417057.1. NC_000913.3.
WP_001196283.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2ZVSX-ray1.65A/B/C2-86[»]
ProteinModelPortaliP52102.
SMRiP52102. Positions 2-82.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260595. 11 interactions.
IntActiP52102. 12 interactions.
STRINGi511145.b2562.

Proteomic databases

PaxDbiP52102.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75615; AAC75615; b2562.
BAE76738; BAE76738; BAE76738.
GeneIDi947031.
KEGGiecj:JW2546.
eco:b2562.
PATRICi32120523. VBIEscCol129921_2664.

Organism-specific databases

EchoBASEiEB3006.
EcoGeneiEG13215. yfhL.

Phylogenomic databases

eggNOGiENOG4105K5D. Bacteria.
COG1145. LUCA.
HOGENOMiHOG000044615.
InParanoidiP52102.
OMAiCPVECII.
OrthoDBiEOG6CVV7G.
PhylomeDBiP52102.

Enzyme and pathway databases

BioCyciEcoCyc:G7346-MONOMER.
ECOL316407:JW2546-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP52102.
PROiP52102.

Family and domain databases

InterProiIPR017896. 4Fe4S_Fe-S-bd.
IPR017900. 4Fe4S_Fe_S_CS.
[Graphical view]
PfamiPF00037. Fer4. 1 hit.
[Graphical view]
PROSITEiPS00198. 4FE4S_FER_1. 1 hit.
PS51379. 4FE4S_FER_2. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYFHL_ECOLI
AccessioniPrimary (citable) accession number: P52102
Secondary accession number(s): Q2MAG8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: October 1, 1996
Last modified: May 11, 2016
This is version 104 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.