Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

UPF0235 protein YggU

Gene

yggU

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G7529-MONOMER.
ECOL316407:JW5479-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0235 protein YggUUniRule annotation
Gene namesi
Name:yggUUniRule annotation
Ordered Locus Names:b2953, JW5479
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12981. yggU.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 9696UPF0235 protein YggUPRO_0000139441Add
BLAST

Proteomic databases

PaxDbiP52060.

Interactioni

Protein-protein interaction databases

BioGridi4259417. 167 interactions.
IntActiP52060. 3 interactions.
STRINGi511145.b2953.

Structurei

3D structure databases

ProteinModelPortaliP52060.
SMRiP52060. Positions 1-96.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0235 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105VZ9. Bacteria.
COG1872. LUCA.
HOGENOMiHOG000019208.
InParanoidiP52060.
KOiK09131.
OMAiEFAGLHG.
PhylomeDBiP52060.

Family and domain databases

Gene3Di3.30.1200.10. 1 hit.
HAMAPiMF_00634. UPF0235. 1 hit.
InterProiIPR005228. CHP00251.
IPR003746. DUF167.
[Graphical view]
PfamiPF02594. DUF167. 1 hit.
[Graphical view]
SMARTiSM01152. DUF167. 1 hit.
[Graphical view]
SUPFAMiSSF69786. SSF69786. 1 hit.
TIGRFAMsiTIGR00251. TIGR00251. 1 hit.

Sequencei

Sequence statusi: Complete.

P52060-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNAVTVNDDG LVLRLYIQPK ASRDSIVGLH GDEVKVAITA PPVDGQANSH
60 70 80 90
LVKFLGKQFR VAKSQVVIEK GELGRHKQIK IINPQQIPPE IAALIN
Length:96
Mass (Da):10,456
Last modified:May 30, 2000 - v2
Checksum:iF048F5BF11C16C57
GO

Sequence cautioni

The sequence AAA69120 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U28377 Genomic DNA. Translation: AAA69120.1. Different initiation.
U00096 Genomic DNA. Translation: AAC75990.2.
AP009048 Genomic DNA. Translation: BAE77016.1.
PIRiH65080.
RefSeqiNP_417428.2. NC_000913.3.
WP_000994920.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75990; AAC75990; b2953.
BAE77016; BAE77016; BAE77016.
GeneIDi947424.
KEGGiecj:JW5479.
eco:b2953.
PATRICi32121318. VBIEscCol129921_3047.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U28377 Genomic DNA. Translation: AAA69120.1. Different initiation.
U00096 Genomic DNA. Translation: AAC75990.2.
AP009048 Genomic DNA. Translation: BAE77016.1.
PIRiH65080.
RefSeqiNP_417428.2. NC_000913.3.
WP_000994920.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP52060.
SMRiP52060. Positions 1-96.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259417. 167 interactions.
IntActiP52060. 3 interactions.
STRINGi511145.b2953.

Proteomic databases

PaxDbiP52060.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75990; AAC75990; b2953.
BAE77016; BAE77016; BAE77016.
GeneIDi947424.
KEGGiecj:JW5479.
eco:b2953.
PATRICi32121318. VBIEscCol129921_3047.

Organism-specific databases

EchoBASEiEB2806.
EcoGeneiEG12981. yggU.

Phylogenomic databases

eggNOGiENOG4105VZ9. Bacteria.
COG1872. LUCA.
HOGENOMiHOG000019208.
InParanoidiP52060.
KOiK09131.
OMAiEFAGLHG.
PhylomeDBiP52060.

Enzyme and pathway databases

BioCyciEcoCyc:G7529-MONOMER.
ECOL316407:JW5479-MONOMER.

Miscellaneous databases

PROiP52060.

Family and domain databases

Gene3Di3.30.1200.10. 1 hit.
HAMAPiMF_00634. UPF0235. 1 hit.
InterProiIPR005228. CHP00251.
IPR003746. DUF167.
[Graphical view]
PfamiPF02594. DUF167. 1 hit.
[Graphical view]
SMARTiSM01152. DUF167. 1 hit.
[Graphical view]
SUPFAMiSSF69786. SSF69786. 1 hit.
TIGRFAMsiTIGR00251. TIGR00251. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYGGU_ECOLI
AccessioniPrimary (citable) accession number: P52060
Secondary accession number(s): Q2M9P0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: May 30, 2000
Last modified: September 7, 2016
This is version 105 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.