P52057 (PROSC_CAEEL) Reviewed, UniProtKB/Swiss-Prot
Last modified
December 14, 2011.
Version 71.
History...
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Proline synthase co-transcribed bacterial homolog protein | ||
| Gene names |
| ||
| Organism | Caenorhabditis elegans | ||
| Taxonomic identifier | 6239 [NCBI] | ||
| Taxonomic lineage | Eukaryota › Metazoa › Nematoda › Chromadorea › Rhabditida › Rhabditoidea › Rhabditidae › Peloderinae › Caenorhabditis |
Protein attributes
| Sequence length | 244 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at transcript level |
General annotation (Comments)
| Cofactor | Pyridoxal phosphate By similarity. |
| Sequence similarities | Belongs to the UPF0001 family. |
Ontologies
| Keywords | |
|---|---|
| Ligand | Pyridoxal phosphate |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological process | embryo development ending in birth or egg hatching Inferred from mutant phenotype. Source: WormBase |
| Molecular function | pyridoxal phosphate binding Inferred from Biological aspect of Ancestor. Source: RefGenome |
| Complete GO annotation... | |
Sequence annotation (Features)
Sequences
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References
| [1] | "Genome sequence of the nematode C. elegans: a platform for investigating biology." The C. elegans sequencing consortium Science 282:2012-2018(1998) [PubMed: 9851916] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Bristol N2. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | FO081044 Genomic DNA. Translation: CCD68760.1. |
| PIR | T15996. |
| RefSeq | NP_495001.1. NM_062600.4. |
| UniGene | Cel.15476. |
3D structure databases | |
| ProteinModelPortal | P52057. |
| SMR | P52057. Positions 4-237. |
| ModBase | Search... |
Protein-protein interaction databases | |
| STRING | P52057. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| EnsemblMetazoa | F09E5.8.1; F09E5.8.1; F09E5.8. F09E5.8.2; F09E5.8.2; F09E5.8. |
| GeneID | 173906. |
| KEGG | cel:F09E5.8. |
| NMPDR | fig|6239.3.peg.5484. |
| UCSC | F09E5.8. c. elegans. |
Organism-specific databases | |
| CTD | 173906. |
| WormBase | F09E5.8; CE02615; WBGene00017286. |
Phylogenomic databases | |
| eggNOG | meNOG10878. |
| GeneTree | EMGT00050000017273. |
| HOGENOM | HBG289671. |
| InParanoid | P52057. |
| OMA | AVSKTFE. |
| PhylomeDB | P52057. |
Gene expression databases | |
| ArrayExpress | P52057. |
Family and domain databases | |
| InterPro | IPR001608. Ala_racemase_N. IPR011078. UPF0001. [Graphical view] |
| KO | K06997. |
| PANTHER | PTHR10146. PP_YBL036C. 1 hit. |
| Pfam | PF01168. Ala_racemase_N. 1 hit. [Graphical view] |
| PIRSF | PIRSF004848. YBL036c_PLPDEIII. 1 hit. |
| TIGRFAMs | TIGR00044. TIGR00044. 1 hit. |
| PROSITE | PS01211. UPF0001. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| NextBio | 881615. |
Entry information
| Entry name | PROSC_CAEEL | ||||||||
| Accession | Primary (citable) accession number: P52057 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Caenorhabditis annotation project | ||||||||
Relevant documents
| Uncharacterized protein families (UPF) List of uncharacterized protein family (UPF) entries |
| Caenorhabditis elegans Caenorhabditis elegans: entries, gene names and cross-references to WormPep |
| SIMILARITY comments Index of protein domains and families |

Clusters with