Reviewed, UniProtKB/Swiss-Prot P52056 (Y556_SYNY3)

Names and origin

Protein names

Recommended name:
    UPF0001 protein slr0556

Gene names

Ordered Locus Names:

slr0556

Organism

Synechocystis sp. (strain PCC 6803) [Complete proteome] [HAMAP]

Taxonomic identifier

1148 [NCBI]

Taxonomic lineage

Bacteria › Cyanobacteria › Chroococcales › Synechocystis

Protein attributes

Sequence length	218 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Cofactor	Pyridoxal phosphate By similarity.
Sequence similarities	Belongs to the UPF0001 family.

Ontologies

Keywords
Ligand	Pyridoxal phosphate
Technical term	Complete proteome
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 218	218	UPF0001 protein slr0556		PRO_0000163207
Amino acid modifications
	Modified residue	25	1	N6-(pyridoxal phosphate)lysine By similarity

Sequences

	Sequence		Length	Mass (Da)
	P52056-1 [UniParc]. Last modified October 1, 1996. Version 1. Checksum: 00D3E7F0ACB3BB53	FASTA	218	24,038
	10 20 30 40 50 60 MFSPSVYSEI IATLPPSVRL VAVTKTKAIA DIEAAYGAGI RDFAESRIQE ALPKIEALAN 70 80 90 100 110 120 YQDINWHFIG RLQSNKARKV VENFTYIHSV DNLAIAVKLD RIAEELNKFP QGLLQIKLLP 130 140 150 160 170 180 DENKSGWTRE ELKLDLPQLE LLKNLKICGL MTILPLGLSP GDRQLTFGEL KNLATAINQQ 190 200 210 SSLSLTELSM GMSGDYPEAI AAGATMIRLG TILFGDRL

References

[1]

"Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. I. Sequence features in the 1 Mb region from map positions 64% to 92% of the genome." Kaneko T., Tanaka A., Sato S., Kotani H., Sazuka T., Miyajima N., Sugiura M., Tabata S. DNA Res. 2:153-166(1995) [PubMed: 8590279] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

[2]

"Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions." Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S. , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S. DNA Res. 3:109-136(1996) [PubMed: 8905231] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBLGenBankDDBJ	BA000022 Genomic DNA. Translation: BAA10877.1.
PIR	S76030.
RefSeq	NP_442806.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
IntAct	P52056. 1 interaction.
STRING	P52056.
Genome annotation databases
GeneID	952049.
GenomeReviews	Gene locus slr0556 in contig BA000022_GR.
KEGG	syn:slr0556.
NMPDR	fig|1148.1.peg.2907.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	P52056.
OMA	HGSTMVR
Enzyme and pathway databases
BioCyc	SSP1148:SLR0556-MON.
Family and domain databases
InterPro	IPR001608. Ala_racemase_N. IPR011078. Prd-pyrdxlP-dep_enz_YBL036C. [Graphical view]
PANTHER	PTHR10146. PP_YBL036C. 1 hit.
Pfam	PF01168. Ala_racemase_N. 1 hit. [Graphical view]
PIRSF	PIRSF004848. YBL036c_PLPDEIII. 1 hit.
TIGRFAMs	TIGR00044. PP_YBL036C. 1 hit.
PROSITE	PS01211. UPF0001. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Y556_SYNY3

Accession

Primary (citable) accession number: P52056

Entry history

Integrated into UniProtKB/Swiss-Prot:	October 1, 1996
Last sequence update:	October 1, 1996
Last modified:	November 24, 2009
This is version 55 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)