P52056 (Y556_SYNY3) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
UPF0001 protein slr0556

Gene names

Ordered Locus Names:

slr0556

Organism

Synechocystis sp. (strain PCC 6803 / Kazusa)

Taxonomic identifier

1111708 [NCBI]

Taxonomic lineage

Bacteria › Cyanobacteria › Chroococcales › Synechocystis

Protein attributes

Sequence length	218 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Cofactor	Pyridoxal phosphate By similarity.
Sequence similarities	Belongs to the UPF0001 family.

Ontologies

Keywords
Ligand	Pyridoxal phosphate
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 218	218	UPF0001 protein slr0556		PRO_0000163207
Amino acid modifications
	Modified residue	25	1	N6-(pyridoxal phosphate)lysine By similarity

Sequences

	Sequence		Length	Mass (Da)
	P52056 [UniParc]. Last modified October 1, 1996. Version 1. Checksum: 00D3E7F0ACB3BB53	FASTA	218	24,038
	10 20 30 40 50 60 MFSPSVYSEI IATLPPSVRL VAVTKTKAIA DIEAAYGAGI RDFAESRIQE ALPKIEALAN 70 80 90 100 110 120 YQDINWHFIG RLQSNKARKV VENFTYIHSV DNLAIAVKLD RIAEELNKFP QGLLQIKLLP 130 140 150 160 170 180 DENKSGWTRE ELKLDLPQLE LLKNLKICGL MTILPLGLSP GDRQLTFGEL KNLATAINQQ 190 200 210 SSLSLTELSM GMSGDYPEAI AAGATMIRLG TILFGDRL

References

[1]	"Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. I. Sequence features in the 1 Mb region from map positions 64% to 92% of the genome." Kaneko T., Tanaka A., Sato S., Kotani H., Sazuka T., Miyajima N., Sugiura M., Tabata S. DNA Res. 2:153-166(1995) [PubMed: 8590279] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 27184 / PCC 6803 / N-1.
[2]	"Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions." Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S. , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S. DNA Res. 3:109-136(1996) [PubMed: 8905231] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 27184 / PCC 6803 / N-1.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BA000022 Genomic DNA. Translation: BAA10877.1.
PIR	S76030.
RefSeq	NP_442806.1. NC_000911.1.
3D structure databases
ProteinModelPortal	P52056.
ModBase	Search...
Protein-protein interaction databases
IntAct	P52056. 1 interaction.
STRING	P52056.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	952049.
GenomeReviews	Gene locus slr0556 in contig BA000022_GR.
KEGG	syn:slr0556.
NMPDR	fig|1148.1.peg.2907.
PATRIC	23843382. VBISynSp132158_3227.
Phylogenomic databases
eggNOG	COG0325.
HOGENOM	HBG289671.
OMA	HGSTMVR.
PhylomeDB	P52056.
Enzyme and pathway databases
BioCyc	SSP1148:SLR0556-MONOMER.
Family and domain databases
InterPro	IPR001608. Ala_racemase_N. IPR011078. UPF0001. [Graphical view]
KO	K06997.
PANTHER	PTHR10146. PP_YBL036C. 1 hit.
Pfam	PF01168. Ala_racemase_N. 1 hit. [Graphical view]
PIRSF	PIRSF004848. YBL036c_PLPDEIII. 1 hit.
TIGRFAMs	TIGR00044. TIGR00044. 1 hit.
PROSITE	PS01211. UPF0001. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Y556_SYNY3

Accession

Primary (citable) accession number: P52056

Entry history

Integrated into UniProtKB/Swiss-Prot:	October 1, 1996
Last sequence update:	October 1, 1996
Last modified:	January 25, 2012
This is version 68 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program