Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Uncharacterized HTH-type transcriptional regulator YgfI

Gene

ygfI

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi21 – 40H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

  • cellular response to DNA damage stimulus Source: EcoliWiki
  • regulation of transcription, DNA-templated Source: GO_Central
  • transcription, DNA-templated Source: EcoCyc

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciEcoCyc:G7518-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YgfI
Gene namesi
Name:ygfI
Ordered Locus Names:b2921, JW5476
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12974 ygfI

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001057941 – 298Uncharacterized HTH-type transcriptional regulator YgfIAdd BLAST298

Proteomic databases

PaxDbiP52044
PRIDEiP52044

Interactioni

Protein-protein interaction databases

BioGridi4263514, 19 interactors
STRINGi316385.ECDH10B_3096

Structurei

3D structure databases

ProteinModelPortaliP52044
SMRiP52044
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 61HTH lysR-typePROSITE-ProRule annotationAdd BLAST61

Phylogenomic databases

eggNOGiENOG4105DEQ Bacteria
ENOG410XPUX LUCA
HOGENOMiHOG000124391
OMAiAMLDAYM
PhylomeDBiP52044

Family and domain databases

Gene3Di1.10.10.10, 1 hit
InterProiView protein in InterPro
IPR005119 LysR_subst-bd
IPR000847 Tscrpt_reg_HTH_LysR
IPR036388 WH-like_DNA-bd_sf
IPR036390 WH_DNA-bd_sf
PfamiView protein in Pfam
PF00126 HTH_1, 1 hit
PF03466 LysR_substrate, 1 hit
SUPFAMiSSF46785 SSF46785, 1 hit
PROSITEiView protein in PROSITE
PS50931 HTH_LYSR, 1 hit

Sequencei

Sequence statusi: Complete.

P52044-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDIFISKKMR NFILLAQTNN IARAAEKIHM TASPFGKSIA ALEEQIGYTL
60 70 80 90 100
FTRKDNNISL NKAGQELYQK LFPVYQRLSA IDNEIHNSGR RSREIVIGID
110 120 130 140 150
NTYPTIIFDQ LISLGDKYEG VTAQPVEFSE NGVIDNLFDR QLDFIISPQH
160 170 180 190 200
VSARVQELEN LTISELPPLR LGFLVSRRYE ERQEQELLQE LPWLQMRFQN
210 220 230 240 250
RANFEAMIDA NMRPCGINPT IIYRPYSFMA KISAVERGHF LTVIPHFAWR
260 270 280 290
LVNPATLKYF DAPHRPMYMQ EYLYSIRNHR YTATMLQHIA EDRDGTSH
Length:298
Mass (Da):34,674
Last modified:November 16, 2001 - v2
Checksum:i14631042D131A27E
GO

Sequence cautioni

The sequence AAA69088 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U28377 Genomic DNA Translation: AAA69088.1 Different initiation.
U00096 Genomic DNA Translation: AAC75958.2
AP009048 Genomic DNA Translation: BAE76985.1
PIRiH65076
RefSeqiNP_417396.4, NC_000913.3
WP_000350807.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC75958; AAC75958; b2921
BAE76985; BAE76985; BAE76985
GeneIDi947401
KEGGiecj:JW5476
eco:b2921
PATRICifig|1411691.4.peg.3811

Similar proteinsi

Entry informationi

Entry nameiYGFI_ECOLI
AccessioniPrimary (citable) accession number: P52044
Secondary accession number(s): Q2M9S1
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: November 16, 2001
Last modified: March 28, 2018
This is version 121 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health