Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Protein YecM

Gene

yecM

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G7025-MONOMER.
ECOL316407:JW5309-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein YecM
Gene namesi
Name:yecM
Synonyms:yecL
Ordered Locus Names:b1875, JW5309
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13405. yecM.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: EcoCyc
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 188188Protein YecMPRO_0000169079Add
BLAST

Proteomic databases

EPDiP52007.
PaxDbiP52007.
PRIDEiP52007.

Interactioni

Protein-protein interaction databases

BioGridi4262119. 9 interactions.
STRINGi511145.b1875.

Structurei

Secondary structure

1
188
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi4 – 63Combined sources
Helixi8 – 103Combined sources
Helixi11 – 3121Combined sources
Beta strandi39 – 468Combined sources
Helixi50 – 6011Combined sources
Turni61 – 633Combined sources
Beta strandi64 – 729Combined sources
Beta strandi75 – 8814Combined sources
Beta strandi91 – 999Combined sources
Beta strandi110 – 1178Combined sources
Helixi122 – 1243Combined sources
Helixi125 – 1317Combined sources
Helixi135 – 1395Combined sources
Beta strandi144 – 1474Combined sources
Beta strandi162 – 1687Combined sources
Beta strandi170 – 1767Combined sources
Helixi178 – 1847Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1K4NX-ray1.60A1-188[»]
ProteinModelPortaliP52007.
SMRiP52007. Positions 1-186.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP52007.

Family & Domainsi

Sequence similaritiesi

To H.influenzae HI_1582/HI_1581.Curated

Phylogenomic databases

eggNOGiENOG4106ZCM. Bacteria.
COG3102. LUCA.
HOGENOMiHOG000293172.
InParanoidiP52007.
KOiK09907.
OMAiVEGWEHI.
OrthoDBiEOG696BWM.

Family and domain databases

Gene3Di3.10.180.10. 1 hit.
InterProiIPR010393. DUF991.
IPR029068. Glyas_Bleomycin-R_OHBP_Dase.
[Graphical view]
PfamiPF06185. YecM. 1 hit.
[Graphical view]
SUPFAMiSSF54593. SSF54593. 1 hit.

Sequencei

Sequence statusi: Complete.

P52007-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MANWQSIDEL QDIASDLPRF IHALDELSRR LGLNITPLTA DHISLRCHQN
60 70 80 90 100
ATAERWRRGF EQCGELLSEN MINGRPICLF KLHEPVQVAH WQFSIVELPW
110 120 130 140 150
PGEKRYPHEG WEHIEIVLPG DPETLNARAL ALLSDEGLSL PGISVKTSSP
160 170 180
KGEHERLPNP TLAVTDGKTT IKFHPWSIEE IVASEQSA
Length:188
Mass (Da):21,205
Last modified:July 15, 1998 - v3
Checksum:i700B8E042FAAA8A5
GO

Sequence cautioni

The sequence AAA89200.1 differs from that shown. Reason: Frameshift at position 126. Curated
The sequence AAA89201.1 differs from that shown. Reason: Frameshift at position 128. Produces two separate ORFs.Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti102 – 1021G → R in AAA89200 (Ref. 4) Curated
Sequence conflicti120 – 1201G → V in AAA89200 (Ref. 4) Curated
Sequence conflicti167 – 1671G → A in AAA89201 (Ref. 4) Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74945.2.
AP009048 Genomic DNA. Translation: BAA15685.2.
L38618 Genomic DNA. Translation: AAA89200.1. Frameshift.
L38618 Genomic DNA. Translation: AAA89201.1. Frameshift.
PIRiC64950.
RefSeqiNP_416389.4. NC_000913.3.
WP_001326725.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74945; AAC74945; b1875.
BAA15685; BAA15685; BAA15685.
GeneIDi946415.
KEGGiecj:JW5309.
eco:b1875.
PATRICi32119075. VBIEscCol129921_1955.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74945.2.
AP009048 Genomic DNA. Translation: BAA15685.2.
L38618 Genomic DNA. Translation: AAA89200.1. Frameshift.
L38618 Genomic DNA. Translation: AAA89201.1. Frameshift.
PIRiC64950.
RefSeqiNP_416389.4. NC_000913.3.
WP_001326725.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1K4NX-ray1.60A1-188[»]
ProteinModelPortaliP52007.
SMRiP52007. Positions 1-186.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262119. 9 interactions.
STRINGi511145.b1875.

Proteomic databases

EPDiP52007.
PaxDbiP52007.
PRIDEiP52007.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74945; AAC74945; b1875.
BAA15685; BAA15685; BAA15685.
GeneIDi946415.
KEGGiecj:JW5309.
eco:b1875.
PATRICi32119075. VBIEscCol129921_1955.

Organism-specific databases

EchoBASEiEB3181.
EcoGeneiEG13405. yecM.

Phylogenomic databases

eggNOGiENOG4106ZCM. Bacteria.
COG3102. LUCA.
HOGENOMiHOG000293172.
InParanoidiP52007.
KOiK09907.
OMAiVEGWEHI.
OrthoDBiEOG696BWM.

Enzyme and pathway databases

BioCyciEcoCyc:G7025-MONOMER.
ECOL316407:JW5309-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP52007.
PROiP52007.

Family and domain databases

Gene3Di3.10.180.10. 1 hit.
InterProiIPR010393. DUF991.
IPR029068. Glyas_Bleomycin-R_OHBP_Dase.
[Graphical view]
PfamiPF06185. YecM. 1 hit.
[Graphical view]
SUPFAMiSSF54593. SSF54593. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  4. Gupta S.D., Wu H.C.
    Submitted (FEB-1996) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 102-188.
    Strain: K12 / MC4100 / ATCC 35695 / DSM 6574.
  5. "Enrichment of low abundance proteins of Escherichia coli by hydroxyapatite chromatography."
    Fountoulakis M., Takacs M.-F., Berndt P., Langen H., Takacs B.
    Electrophoresis 20:2181-2195(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY.
    Strain: B / BL21.

Entry informationi

Entry nameiYECM_ECOLI
AccessioniPrimary (citable) accession number: P52007
Secondary accession number(s): P52008, P76295
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: July 15, 1998
Last modified: March 16, 2016
This is version 109 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.