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Protein

Protein YecM

Gene

yecM

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G7025-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Protein YecM
Gene namesi
Name:yecM
Synonyms:yecL
Ordered Locus Names:b1875, JW5309
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13405 yecM

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: EcoCyc

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001690791 – 188Protein YecMAdd BLAST188

Proteomic databases

EPDiP52007
PaxDbiP52007
PRIDEiP52007

Interactioni

Protein-protein interaction databases

BioGridi4262119, 9 interactors
STRINGi316385.ECDH10B_2016

Structurei

Secondary structure

1188
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi4 – 6Combined sources3
Helixi8 – 10Combined sources3
Helixi11 – 31Combined sources21
Beta strandi39 – 46Combined sources8
Helixi50 – 60Combined sources11
Turni61 – 63Combined sources3
Beta strandi64 – 72Combined sources9
Beta strandi75 – 88Combined sources14
Beta strandi91 – 99Combined sources9
Beta strandi110 – 117Combined sources8
Helixi122 – 124Combined sources3
Helixi125 – 131Combined sources7
Helixi135 – 139Combined sources5
Beta strandi144 – 147Combined sources4
Beta strandi162 – 168Combined sources7
Beta strandi170 – 176Combined sources7
Helixi178 – 184Combined sources7

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1K4NX-ray1.60A1-188[»]
ProteinModelPortaliP52007
SMRiP52007
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP52007

Family & Domainsi

Sequence similaritiesi

To H.influenzae HI_1582/HI_1581.Curated

Phylogenomic databases

eggNOGiENOG4106ZCM Bacteria
COG3102 LUCA
HOGENOMiHOG000293172
InParanoidiP52007
KOiK09907
OMAiVEGWEHI

Family and domain databases

CDDicd07268 VOC_EcYecM_like, 1 hit
Gene3Di3.10.180.10, 1 hit
InterProiView protein in InterPro
IPR010393 DUF991
IPR029068 Glyas_Bleomycin-R_OHBP_Dase
PANTHERiPTHR37519 PTHR37519, 1 hit
PfamiView protein in Pfam
PF06185 YecM, 1 hit
SUPFAMiSSF54593 SSF54593, 1 hit

Sequencei

Sequence statusi: Complete.

P52007-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MANWQSIDEL QDIASDLPRF IHALDELSRR LGLNITPLTA DHISLRCHQN
60 70 80 90 100
ATAERWRRGF EQCGELLSEN MINGRPICLF KLHEPVQVAH WQFSIVELPW
110 120 130 140 150
PGEKRYPHEG WEHIEIVLPG DPETLNARAL ALLSDEGLSL PGISVKTSSP
160 170 180
KGEHERLPNP TLAVTDGKTT IKFHPWSIEE IVASEQSA
Length:188
Mass (Da):21,205
Last modified:July 15, 1998 - v3
Checksum:i700B8E042FAAA8A5
GO

Sequence cautioni

The sequence AAA89200 differs from that shown. Reason: Frameshift at position 126.Curated
The sequence AAA89201 differs from that shown. Reason: Frameshift at position 128. Produces two separate ORFs.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti102G → R in AAA89200 (Ref. 4) Curated1
Sequence conflicti120G → V in AAA89200 (Ref. 4) Curated1
Sequence conflicti167G → A in AAA89201 (Ref. 4) Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA Translation: AAC74945.2
AP009048 Genomic DNA Translation: BAA15685.2
L38618 Genomic DNA Translation: AAA89200.1 Frameshift.
L38618 Genomic DNA Translation: AAA89201.1 Frameshift.
PIRiC64950
RefSeqiNP_416389.4, NC_000913.3
WP_001326725.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC74945; AAC74945; b1875
BAA15685; BAA15685; BAA15685
GeneIDi946415
KEGGiecj:JW5309
eco:b1875
PATRICifig|1411691.4.peg.373

Similar proteinsi

Entry informationi

Entry nameiYECM_ECOLI
AccessioniPrimary (citable) accession number: P52007
Secondary accession number(s): P52008, P76295
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: July 15, 1998
Last modified: March 28, 2018
This is version 119 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

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