P51801 (CLCKB_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 29, 2013.
Version 124.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Chloride channel protein ClC-Kb Short name=Chloride channel Kb Alternative name(s): ClC-K2 | ||
| Gene names |
| ||
| Organism | Homo sapiens (Human) [Reference proteome] | ||
| Taxonomic identifier | 9606 [NCBI] | ||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 687 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Voltage-gated chloride channel. Chloride channels have several functions including the regulation of cell volume; membrane potential stabilization, signal transduction and transepithelial transport. May be important in urinary concentrating mechanisms. Ref.6 |
| Subunit structure | Interacts with BSND. Forms heteromers with BSND in the thick ascending limb of Henle and more distal segments By similarity. |
| Subcellular location | |
| Tissue specificity | Expressed predominantly in the kidney. Ref.6 |
| Involvement in disease | Bartter syndrome 3 (BS3) [MIM:607364]: An autosomal recessive disorder characterized by impaired salt reabsorption in the thick ascending loop of Henle with pronounced salt wasting, hypokalemic metabolic alkalosis, and varying degrees of hypercalciuria. Bartter syndrome 4B (BS4B) [MIM:613090]: A digenic, recessive disorder characterized by impaired salt reabsorption in the thick ascending loop of Henle with pronounced salt wasting, hypokalemic metabolic alkalosis, and varying degrees of hypercalciuria. Bartter syndrome type 4B is associated with sensorineural deafness. |
| Miscellaneous | Compared with CLCNKA/BSND, CLCNKB/BSND is more sensitive to pH and less responsive to Ca2+. |
| Sequence similarities | Belongs to the chloride channel (TC 2.A.49) family. CLCNKB subfamily. [View classification] Contains 2 CBS domains. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Ion transport Transport |
| Cellular component | Cell membrane Membrane |
| Coding sequence diversity | Alternative splicing Polymorphism |
| Disease | Bartter syndrome Deafness Disease mutation |
| Domain | CBS domain Repeat Transmembrane Transmembrane helix |
| Ligand | Chloride |
| Molecular function | Chloride channel Ion channel Voltage-gated channel |
| PTM | Glycoprotein |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological_process | excretion Traceable author statement Ref.9. Source: ProtInc |
| Cellular_component | chloride channel complex Inferred from electronic annotation. Source: UniProtKB-KW integral to plasma membraneTraceable author statement Ref.1. Source: ProtInc |
| Molecular_function | voltage-gated chloride channel activity Traceable author statement Ref.1. Source: ProtInc |
| Complete GO annotation... | |
Alternative products
| This entry describes 2 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: P51801-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: P51801-2) The sequence of this isoform differs from the canonical sequence as follows: 1-49: MEEFVGLREG...KQKLFRLGED → MPCPPLLSVP...RAHLRSVSPP 50-218: Missing. 616-616: Missing. | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 687 | 687 | Chloride channel protein ClC-Kb | PRO_0000094459 | |||||
Regions | |||||||||
| Topological domain | 1 – 50 | 50 | Cytoplasmic Potential | ||||||
| Transmembrane | 51 – 71 | 21 | Helical; Potential | ||||||
| Transmembrane | 94 – 114 | 21 | Helical; Potential | ||||||
| Transmembrane | 161 – 181 | 21 | Helical; Potential | ||||||
| Transmembrane | 202 – 222 | 21 | Helical; Potential | ||||||
| Transmembrane | 236 – 256 | 21 | Helical; Potential | ||||||
| Transmembrane | 282 – 302 | 21 | Helical; Potential | ||||||
| Transmembrane | 325 – 345 | 21 | Helical; Potential | ||||||
| Transmembrane | 396 – 416 | 21 | Helical; Potential | ||||||
| Transmembrane | 417 – 437 | 21 | Helical; Potential | ||||||
| Transmembrane | 452 – 472 | 21 | Helical; Potential | ||||||
| Transmembrane | 486 – 506 | 21 | Helical; Potential | ||||||
| Domain | 551 – 609 | 59 | CBS 1 | ||||||
| Domain | 626 – 684 | 59 | CBS 2 | ||||||
Amino acid modifications | |||||||||
| Glycosylation | 679 | 1 | N-linked (GlcNAc...) Potential | ||||||
Natural variations | |||||||||
| Alternative sequence | 1 – 49 | 49 | MEEFV…RLGED → MPCPPLLSVPVRAAGEQDRW VREEVTWGGGPTVTGGWGWR AHLRSVSPP in isoform 2. | VSP_045965 | |||||
| Alternative sequence | 50 – 218 | 169 | Missing in isoform 2. | VSP_045966 | |||||
| Alternative sequence | 616 | 1 | Missing in isoform 2. | VSP_045967 | |||||
| Natural variant | 4 | 1 | F → L. Corresponds to variant rs34851419 [ dbSNP | Ensembl ]. | VAR_033770 | |||||
| Natural variant | 27 | 1 | R → L. Ref.1 Ref.2 Corresponds to variant rs2015352 [ dbSNP | Ensembl ]. | VAR_046797 | |||||
| Natural variant | 88 | 1 | S → R. Corresponds to variant rs5256 [ dbSNP | Ensembl ]. | VAR_014466 | |||||
| Natural variant | 104 | 1 | V → I. Corresponds to variant rs35530360 [ dbSNP | Ensembl ]. | VAR_033771 | |||||
| Natural variant | 124 | 1 | P → L in BS3. Ref.9 | VAR_001624 | |||||
| Natural variant | 126 | 1 | V → L. Corresponds to variant rs5258 [ dbSNP | Ensembl ]. | VAR_046798 | |||||
| Natural variant | 143 | 1 | N → H. Corresponds to variant rs5259 [ dbSNP | Ensembl ]. | VAR_014467 | |||||
| Natural variant | 204 | 1 | A → T in BS3. Ref.9 | VAR_001625 | |||||
| Natural variant | 214 | 1 | A → G. Ref.1 Ref.2 Corresponds to variant rs1889789 [ dbSNP | Ensembl ]. | VAR_033772 | |||||
| Natural variant | 287 | 1 | A → V. Ref.1 Ref.2 Ref.3 Corresponds to variant rs34188929 [ dbSNP | Ensembl ]. | VAR_069104 | |||||
| Natural variant | 334 | 1 | V → L. Corresponds to variant rs5251 [ dbSNP | Ensembl ]. | VAR_014468 | |||||
| Natural variant | 349 | 1 | A → D in BS3. Ref.9 | VAR_001626 | |||||
| Natural variant | 395 | 1 | R → W. Corresponds to variant rs34255952 [ dbSNP | Ensembl ]. | VAR_046799 | |||||
| Natural variant | 419 | 1 | I → V. Corresponds to variant rs6650119 [ dbSNP | Ensembl ]. | VAR_033773 | |||||
| Natural variant | 432 | 1 | Y → H in BS3. Ref.9 | VAR_001627 | |||||
| Natural variant | 438 | 1 | R → C in BS3. Ref.9 | VAR_001628 | |||||
| Natural variant | 481 | 1 | T → S. Corresponds to variant rs12140311 [ dbSNP | Ensembl ]. | VAR_046800 | |||||
| Natural variant | 562 | 1 | M → T. Ref.1 Ref.2 Corresponds to variant rs5253 [ dbSNP | Ensembl ]. | VAR_014469 | |||||
| Natural variant | 578 | 1 | K → E. Ref.1 Ref.2 Corresponds to variant rs2275166 [ dbSNP | Ensembl ]. | VAR_024409 | |||||
| Natural variant | 660 | 1 | S → L. Corresponds to variant rs5255 [ dbSNP | Ensembl ]. | VAR_046801 | |||||
Experimental info | |||||||||
| Sequence conflict | 609 | 1 | S → P in BAG53595. Ref.3 | ||||||
Sequences
| ||||||||||||||||||||||||
References
| « Hide 'large scale' references | |
| [1] | "Two highly homologous members of the ClC chloride channel family in both rat and human kidney." Kieferle S., Fong P., Bens M., Vandewalle A., Jentsch T. Proc. Natl. Acad. Sci. U.S.A. 91:6943-6947(1994) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), VARIANTS LEU-27; GLY-214; VAL-287; THR-562 AND GLU-578. Tissue: Kidney. |
| [2] | "Cloning, tissue distribution, and intrarenal localization of ClC chloride channels in human kidney." Takeuchi Y., Uchida S., Marumo F., Sasaki S. Kidney Int. 48:1497-1503(1995) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), VARIANTS LEU-27; GLY-214; VAL-287; THR-562 AND GLU-578. Tissue: Kidney. |
| [3] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2), VARIANT VAL-287. Tissue: Uterus. |
| [4] | "The DNA sequence and biological annotation of human chromosome 1." Gregory S.G., Barlow K.F., McLay K.E., Kaul R., Swarbreck D., Dunham A., Scott C.E., Howe K.L., Woodfine K., Spencer C.C.A., Jones M.C., Gillson C., Searle S., Zhou Y., Kokocinski F., McDonald L., Evans R., Phillips K. Bentley D.R.Nature 441:315-321(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [5] | "Refined chromosomal localization of six human CLCN chloride ion channel genes." Schutte B.C., Malik M.I., Fingert J., Barna T.J., Stone E., Lamb F.S. Submitted (MAR-1997) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 153-203. |
| [6] | "Barttin is a Cl- channel beta-subunit crucial for renal Cl-reabsorption and inner ear K+ secretion." Estevez R., Boettger T., Stein V., Birkenhaeger R., Otto E., Hildebrandt F., Jentsch T.J. Nature 414:558-561(2001) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTIONAL CHARACTERIZATION, TISSUE SPECIFICITY. |
| [7] | "Salt wasting and deafness resulting from mutations in two chloride channels." Schlingmann K.P., Konrad M., Jeck N., Waldegger P., Reinalter S.C., Holder M., Seyberth H.W., Waldegger S. N. Engl. J. Med. 350:1314-1319(2004) [PubMed] [Europe PMC] [Abstract] Cited for: INVOLVEMENT IN BS4B. |
| [8] | "Molecular analysis of digenic inheritance in Bartter syndrome with sensorineural deafness." Nozu K., Inagaki T., Fu X.J., Nozu Y., Kaito H., Kanda K., Sekine T., Igarashi T., Nakanishi K., Yoshikawa N., Iijima K., Matsuo M. J. Med. Genet. 45:182-186(2008) [PubMed] [Europe PMC] [Abstract] Cited for: INVOLVEMENT IN BS4B. |
| [9] | "Mutations in the chloride channel gene, CLCNKB, cause Bartter's syndrome type III." Simon D.B., Bindra R.S., Mansfield T.A., Nelson-Williams C., Mendonca E., Stone R., Schurman S., Nayir A., Alpay H., Bakkaloglu A., Rodriguez-Soriano J., Morales J.M., Sanjad S.A., Taylor C.M., Pilz D., Brem A., Trachtman H., Griswold W. Lifton R.P.Nat. Genet. 17:171-178(1997) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS BS3 LEU-124; THR-204; ASP-349; HIS-432 AND CYS-438. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | Z30644 mRNA. Translation: CAA83121.1. S80315 mRNA. Translation: AAB35898.1. AK098217 mRNA. Translation: BAG53595.1. AL355994 Genomic DNA. Translation: CAI16140.1. AL355994 Genomic DNA. Translation: CAI16141.1. U93879 Genomic DNA. Translation: AAB65149.1. |
| IPI | IPI00020881. IPI00641080. |
| PIR | D57713. |
| RefSeq | NP_000076.2. NM_000085.4. NP_001159417.2. NM_001165945.2. |
| UniGene | Hs.352243. |
3D structure databases | |
| ProteinModelPortal | P51801. |
| SMR | P51801. Positions 542-687. |
| ModBase | Search... |
Protein-protein interaction databases | |
| MINT | MINT-7969230. |
| STRING | 9606.ENSP00000364831. |
PTM databases | |
| PhosphoSite | P51801. |
Polymorphism databases | |
| DMDM | 288558843. |
Proteomic databases | |
| PaxDb | P51801. |
| PRIDE | P51801. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000375667; ENSP00000364819; ENSG00000184908. ENST00000375679; ENSP00000364831; ENSG00000184908. |
| GeneID | 1188. |
| KEGG | hsa:1188. |
| UCSC | uc001axx.4. human. uc001axy.4. human. |
Organism-specific databases | |
| CTD | 1188. |
| GeneCards | GC01P016370. |
| H-InvDB | HIX0020336. |
| HGNC | HGNC:2027. CLCNKB. |
| MIM | 602023. gene. 607364. phenotype. 613090. phenotype. |
| neXtProt | NX_P51801. |
| Orphanet | 93605. Classic Bartter syndrome. 358. Gitelman syndrome. 89938. Infantile Bartter syndrome with deafness. |
| PharmGKB | PA26554. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | COG0038. |
| HOGENOM | HOG000231297. |
| HOVERGEN | HBG005332. |
| InParanoid | P51801. |
| KO | K05018. |
| OMA | PRIRSRH. |
| OrthoDB | EOG4KD6KM. |
| PhylomeDB | P51801. |
Gene expression databases | |
| ArrayExpress | P51801. |
| Bgee | P51801. |
| CleanEx | HS_CLCNKB. |
| Genevestigator | P51801. |
| GermOnline | ENSG00000184908. Homo sapiens. |
Family and domain databases | |
| Gene3D | 1.10.3080.10. 2 hits. |
| InterPro | IPR014743. Cl-channel_core. IPR001807. Cl-channel_volt-gated. IPR002250. Cl_channel-K. IPR000644. Cysta_beta_synth_core. [Graphical view] |
| Pfam | PF00571. CBS. 2 hits. PF00654. Voltage_CLC. 1 hit. [Graphical view] |
| PRINTS | PR00762. CLCHANNEL. PR01119. CLCHANNELKDY. |
| SMART | SM00116. CBS. 2 hits. [Graphical view] |
| SUPFAM | SSF81340. Cl-channel_core. 1 hit. |
| PROSITE | PS51371. CBS. 2 hits. [Graphical view] |
| ProtoNet | Search... |
Other | |
| GenomeRNAi | 1188. |
| NextBio | 4918. |
| SOURCE | Search... |
Entry information
| Entry name | CLCKB_HUMAN | ||||||||
| Accession | Primary (citable) accession number: P51801 Secondary accession number(s): B3KUY3, Q5T5Q7, Q5T5Q8 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 1 Human chromosome 1: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
