P51800 (CLCKA_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 122.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Chloride channel protein ClC-Ka Short name=Chloride channel Ka Alternative name(s): ClC-K1 | ||
| Gene names |
| ||
| Organism | Homo sapiens (Human) [Reference proteome] | ||
| Taxonomic identifier | 9606 [NCBI] | ||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 687 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Voltage-gated chloride channel. Chloride channels have several functions including the regulation of cell volume; membrane potential stabilization, signal transduction and transepithelial transport. May be important in urinary concentrating mechanisms. |
| Subunit structure | Homodimer. Interacts with BSND. Forms heteromers with BSND in the thin ascending limb of Henle By similarity. Ref.9 |
| Subcellular location | |
| Tissue specificity | Expressed predominantly in the kidney. All nephron segments expressing BSND also express CLCNK proteins. Ref.7 |
| Involvement in disease | Bartter syndrome 4B (BS4B) [MIM:613090]: A digenic, recessive disorder characterized by impaired salt reabsorption in the thick ascending loop of Henle with pronounced salt wasting, hypokalemic metabolic alkalosis, and varying degrees of hypercalciuria. Bartter syndrome type 4B is associated with sensorineural deafness. |
| Sequence similarities | Belongs to the chloride channel (TC 2.A.49) family. CLCNKA subfamily. [View classification] Contains 2 CBS domains. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Ion transport Transport |
| Cellular component | Membrane |
| Coding sequence diversity | Alternative splicing Polymorphism |
| Disease | Bartter syndrome Deafness Disease mutation |
| Domain | CBS domain Repeat Transmembrane Transmembrane helix |
| Ligand | Chloride |
| Molecular function | Chloride channel Ion channel Voltage-gated channel |
| Technical term | 3D-structure Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological_process | excretion Traceable author statement Ref.1. Source: ProtInc |
| Cellular_component | chloride channel complex Inferred from electronic annotation. Source: UniProtKB-KW integral to plasma membraneTraceable author statement Ref.1. Source: ProtInc |
| Molecular_function | voltage-gated chloride channel activity Traceable author statement Ref.1. Source: ProtInc |
| Complete GO annotation... | |
Alternative products
| This entry describes 3 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: P51800-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: P51800-2) The sequence of this isoform differs from the canonical sequence as follows: 77-119: Missing. | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform 3 (identifier: P51800-3) The sequence of this isoform differs from the canonical sequence as follows: 615-615: Missing. | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||||||||||||||||||||
Molecule processing | |||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 687 | 687 | Chloride channel protein ClC-Ka | PRO_0000094455 | |||||||||||||||||||||||||
Regions | |||||||||||||||||||||||||||||
| Transmembrane | 52 – 72 | 21 | Helical; Potential | ||||||||||||||||||||||||||
| Transmembrane | 161 – 181 | 21 | Helical; Potential | ||||||||||||||||||||||||||
| Transmembrane | 202 – 222 | 21 | Helical; Potential | ||||||||||||||||||||||||||
| Transmembrane | 236 – 256 | 21 | Helical; Potential | ||||||||||||||||||||||||||
| Transmembrane | 282 – 302 | 21 | Helical; Potential | ||||||||||||||||||||||||||
| Transmembrane | 329 – 349 | 21 | Helical; Potential | ||||||||||||||||||||||||||
| Transmembrane | 396 – 416 | 21 | Helical; Potential | ||||||||||||||||||||||||||
| Transmembrane | 417 – 437 | 21 | Helical; Potential | ||||||||||||||||||||||||||
| Transmembrane | 452 – 472 | 21 | Helical; Potential | ||||||||||||||||||||||||||
| Transmembrane | 486 – 506 | 21 | Helical; Potential | ||||||||||||||||||||||||||
| Topological domain | 507 – 687 | 181 | Cytoplasmic Potential | ||||||||||||||||||||||||||
| Domain | 551 – 609 | 59 | CBS 1 | ||||||||||||||||||||||||||
| Domain | 626 – 684 | 59 | CBS 2 | ||||||||||||||||||||||||||
Natural variations | |||||||||||||||||||||||||||||
| Alternative sequence | 77 – 119 | 43 | Missing in isoform 2. | VSP_044700 | |||||||||||||||||||||||||
| Alternative sequence | 615 | 1 | Missing in isoform 3. | VSP_045795 | |||||||||||||||||||||||||
| Natural variant | 8 | 1 | R → H. Corresponds to variant rs9442189 [ dbSNP | Ensembl ]. | VAR_048695 | |||||||||||||||||||||||||
| Natural variant | 45 | 1 | R → H. Corresponds to variant rs35932996 [ dbSNP | Ensembl ]. | VAR_033768 | |||||||||||||||||||||||||
| Natural variant | 67 | 1 | M → I. Ref.5 Corresponds to variant rs17855678 [ dbSNP | Ensembl ]. | VAR_030784 | |||||||||||||||||||||||||
| Natural variant | 80 | 1 | W → C in BS4B; a patient also carrying a mutation in CLCNKB. Ref.10 | VAR_063074 | |||||||||||||||||||||||||
| Natural variant | 83 | 1 | R → G. Ref.3 Corresponds to variant rs10927887 [ dbSNP | Ensembl ]. | VAR_019787 | |||||||||||||||||||||||||
| Natural variant | 287 | 1 | A → V. Corresponds to variant rs34188929 [ dbSNP | Ensembl ]. | VAR_033769 | |||||||||||||||||||||||||
| Natural variant | 315 | 1 | Y → F. Ref.5 Corresponds to variant rs12126269 [ dbSNP | Ensembl ]. | VAR_019788 | |||||||||||||||||||||||||
| Natural variant | 357 | 1 | H → Q. Ref.3 Corresponds to variant rs79751787 [ dbSNP | Ensembl ]. | VAR_068971 | |||||||||||||||||||||||||
| Natural variant | 447 | 1 | A → T. Ref.2 Ref.3 Corresponds to variant rs1805152 [ dbSNP | Ensembl ]. | VAR_014465 | |||||||||||||||||||||||||
| Natural variant | 534 | 1 | R → W. Corresponds to variant rs12140223 [ dbSNP | Ensembl ]. | VAR_059209 | |||||||||||||||||||||||||
| Natural variant | 683 | 1 | P → L. Corresponds to variant rs12746751 [ dbSNP | Ensembl ]. | VAR_061095 | |||||||||||||||||||||||||
Experimental info | |||||||||||||||||||||||||||||
| Sequence conflict | 28 | 1 | I → V in BAG60545. Ref.2 | ||||||||||||||||||||||||||
| Sequence conflict | 451 | 1 | G → D in BAG60545. Ref.2 | ||||||||||||||||||||||||||
Secondary structure | |||||||||||||||||||||||||||||
Helix Strand Turn | |||||||||||||||||||||||||||||
| Helix | 547 – 550 | 4 | |||||||||||||||||||||||||||
| Helix | 564 – 572 | 9 | |||||||||||||||||||||||||||
| Beta strand | 577 – 583 | 7 | |||||||||||||||||||||||||||
| Turn | 585 – 587 | 3 | |||||||||||||||||||||||||||
| Beta strand | 589 – 595 | 7 | |||||||||||||||||||||||||||
| Helix | 596 – 604 | 9 | |||||||||||||||||||||||||||
| Helix | 618 – 623 | 6 | |||||||||||||||||||||||||||
| Helix | 641 – 650 | 10 | |||||||||||||||||||||||||||
| Beta strand | 654 – 660 | 7 | |||||||||||||||||||||||||||
| Beta strand | 663 – 669 | 7 | |||||||||||||||||||||||||||
| Helix | 670 – 681 | 12 | |||||||||||||||||||||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Two highly homologous members of the ClC chloride channel family in both rat and human kidney." Kieferle S., Fong P., Bens M., Vandewalle A., Jentsch T. Proc. Natl. Acad. Sci. U.S.A. 91:6943-6947(1994) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). Tissue: Kidney. |
| [2] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2), VARIANT THR-447. Tissue: Kidney. |
| [3] | Suzuki Y., Sugano S., Totoki Y., Toyoda A., Takeda T., Sakaki Y., Tanaka A., Yokoyama S. Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 3), VARIANTS GLY-83; GLN-357 AND THR-447. Tissue: Kidney. |
| [4] | "The DNA sequence and biological annotation of human chromosome 1." Gregory S.G., Barlow K.F., McLay K.E., Kaul R., Swarbreck D., Dunham A., Scott C.E., Howe K.L., Woodfine K., Spencer C.C.A., Jones M.C., Gillson C., Searle S., Zhou Y., Kokocinski F., McDonald L., Evans R., Phillips K. Bentley D.R.Nature 441:315-321(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [5] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 3), VARIANTS ILE-67 AND PHE-315. Tissue: Colon. |
| [6] | "Refined chromosomal localization of six human CLCN chloride ion channel genes." Schutte B.C., Malik M.I., Fingert J., Barna T.J., Stone E., Lamb F.S. Submitted (MAR-1997) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 153-203. |
| [7] | "Barttin is a Cl- channel beta-subunit crucial for renal Cl-reabsorption and inner ear K+ secretion." Estevez R., Boettger T., Stein V., Birkenhaeger R., Otto E., Hildebrandt F., Jentsch T.J. Nature 414:558-561(2001) [PubMed] [Europe PMC] [Abstract] Cited for: TISSUE SPECIFICITY. |
| [8] | "Molecular analysis of digenic inheritance in Bartter syndrome with sensorineural deafness." Nozu K., Inagaki T., Fu X.J., Nozu Y., Kaito H., Kanda K., Sekine T., Igarashi T., Nakanishi K., Yoshikawa N., Iijima K., Matsuo M. J. Med. Genet. 45:182-186(2008) [PubMed] [Europe PMC] [Abstract] Cited for: INVOLVEMENT IN BS4B. |
| [9] | "The structure of the cytoplasmic domain of the chloride channel ClC-Ka reveals a conserved interaction interface." Markovic S., Dutzler R. Structure 15:715-725(2007) [PubMed] [Europe PMC] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (1.6 ANGSTROMS) OF 533-687, SUBUNIT. |
| [10] | "Salt wasting and deafness resulting from mutations in two chloride channels." Schlingmann K.P., Konrad M., Jeck N., Waldegger P., Reinalter S.C., Holder M., Seyberth H.W., Waldegger S. N. Engl. J. Med. 350:1314-1319(2004) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANT BS4B CYS-80. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | Z30643 mRNA. Translation: CAA83120.1. AK298285 mRNA. Translation: BAG60545.1. AK225550 mRNA. No translation available. AL355994 Genomic DNA. Translation: CAI16137.1. AL355994 Genomic DNA. Translation: CAI16138.1. BC048282 mRNA. Translation: AAH48282.1. BC053869 mRNA. Translation: AAH53869.1. U93878 Genomic DNA. Translation: AAB65148.1. | ||||||||||||
| IPI | IPI00020879. IPI00641999. IPI00908815. | ||||||||||||
| PIR | C57713. | ||||||||||||
| RefSeq | NP_001036169.1. NM_001042704.1. NP_001244068.1. NM_001257139.1. NP_004061.3. NM_004070.3. | ||||||||||||
| UniGene | Hs.591533. | ||||||||||||
3D structure databases | |||||||||||||
| PDBe RCSB PDB PDBj |
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| ProteinModelPortal | P51800. | ||||||||||||
| ModBase | Search... | ||||||||||||
Protein-protein interaction databases | |||||||||||||
| DIP | DIP-29432N. | ||||||||||||
| STRING | 9606.ENSP00000332771. | ||||||||||||
PTM databases | |||||||||||||
| PhosphoSite | P51800. | ||||||||||||
Polymorphism databases | |||||||||||||
| DMDM | 1705857. | ||||||||||||
Proteomic databases | |||||||||||||
| PaxDb | P51800. | ||||||||||||
| PRIDE | P51800. | ||||||||||||
Protocols and materials databases | |||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||
Genome annotation databases | |||||||||||||
| Ensembl | ENST00000331433; ENSP00000332771; ENSG00000186510. ENST00000375692; ENSP00000364844; ENSG00000186510. ENST00000420078; ENSP00000410353; ENSG00000186510. ENST00000439316; ENSP00000414445; ENSG00000186510. | ||||||||||||
| GeneID | 1187. | ||||||||||||
| KEGG | hsa:1187. | ||||||||||||
| UCSC | uc001axu.3. human. | ||||||||||||
Organism-specific databases | |||||||||||||
| CTD | 1187. | ||||||||||||
| GeneCards | GC01P016345. | ||||||||||||
| HGNC | HGNC:2026. CLCNKA. | ||||||||||||
| MIM | 602024. gene. 613090. phenotype. | ||||||||||||
| neXtProt | NX_P51800. | ||||||||||||
| Orphanet | 89938. Infantile Bartter syndrome with deafness. | ||||||||||||
| PharmGKB | PA26553. | ||||||||||||
| GenAtlas | Search... | ||||||||||||
Phylogenomic databases | |||||||||||||
| eggNOG | COG0038. | ||||||||||||
| HOGENOM | HOG000231297. | ||||||||||||
| HOVERGEN | HBG005332. | ||||||||||||
| InParanoid | P51800. | ||||||||||||
| KO | K05017. | ||||||||||||
| OMA | VGHFLAS. | ||||||||||||
| PhylomeDB | P51800. | ||||||||||||
Gene expression databases | |||||||||||||
| ArrayExpress | P51800. | ||||||||||||
| Bgee | P51800. | ||||||||||||
| CleanEx | HS_CLCNKA. | ||||||||||||
| Genevestigator | P51800. | ||||||||||||
| GermOnline | ENSG00000186510. Homo sapiens. | ||||||||||||
Family and domain databases | |||||||||||||
| Gene3D | 1.10.3080.10. 2 hits. | ||||||||||||
| InterPro | IPR014743. Cl-channel_core. IPR001807. Cl-channel_volt-gated. IPR002250. Cl_channel-K. IPR000644. Cysta_beta_synth_core. [Graphical view] | ||||||||||||
| Pfam | PF00571. CBS. 2 hits. PF00654. Voltage_CLC. 1 hit. [Graphical view] | ||||||||||||
| PRINTS | PR00762. CLCHANNEL. PR01119. CLCHANNELKDY. | ||||||||||||
| SMART | SM00116. CBS. 1 hit. [Graphical view] | ||||||||||||
| SUPFAM | SSF81340. Cl-channel_core. 1 hit. | ||||||||||||
| PROSITE | PS51371. CBS. 2 hits. [Graphical view] | ||||||||||||
| ProtoNet | Search... | ||||||||||||
Other | |||||||||||||
| DrugBank | DB04552. Niflumic Acid. | ||||||||||||
| EvolutionaryTrace | P51800. | ||||||||||||
| GenomeRNAi | 1187. | ||||||||||||
| NextBio | 4912. | ||||||||||||
| SOURCE | Search... | ||||||||||||
Entry information
| Entry name | CLCKA_HUMAN | ||||||||
| Accession | Primary (citable) accession number: P51800 Secondary accession number(s): B4DPD3 Q86VT1 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 1 Human chromosome 1: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with
