Reviewed,
UniProtKB/Swiss-Prot P51608 (MECP2_HUMAN)
Last modified
February 9, 2010.
Version 133.
History...
Clusters with 100%,
90%,
50% identity |
Documents (6) |
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Names and origin
| Protein names | Recommended name: Methyl-CpG-binding protein 2 Short name=MeCp-2 protein Short name=MeCp2 | ||
| Gene names |
| ||
| Organism | Homo sapiens (Human) [Complete proteome] | ||
| Taxonomic identifier | 9606 [NCBI] | ||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 486 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level. |
General annotation (Comments)
| Function | Chromosomal protein that binds to methylated DNA. It can bind specifically to a single methyl-CpG pair. It is not influenced by sequences flanking the methyl-CpGs. Mediates transcriptional repression through interaction with histone deacetylase and the corepressor SIN3A. |
| Subunit structure | Interacts with FNBP3 By similarity. Interacts with CDKL5. Ref.15 |
| Subcellular location | Nucleus. Note: Colocalized with methyl-CpG in the genome. |
| Tissue specificity | Present in all adult somatic tissues tested. |
| Post-translational modification | Phosphorylated on Ser-423 in brain upon synaptic activity, which attenuates its repressor activity and seems to regulate dendritic growth and spine maturation By similarity. Ref.13 Ref.16 Ref.17 Ref.18 Ref.19 |
| Involvement in disease | Defects in MECP2 may be a cause of Angelman syndrome (AS) [MIM:105830]; also known as happy puppet syndrome. AS is a neurodevelopmental disorder characterized by severe mental retardation, absent speech, ataxia, sociable affect and dysmorphic facial features. AS and Rett syndrome have overlapping clinical features. Ref.34 Ref.38 Defects in MECP2 are the cause of mental retardation syndromic X-linked type 13 (MRXS13) [MIM:300055]. Mental retardation is a mental disorder characterized by significantly sub-average general intellectual functioning associated with impairments in adaptative behavior and manifested during the developmental period. MRXS13 patients manifest mental retardation associated with other variable features such as spasticity, episodes of manic depressive psychosis, increased tone and macroorchidism. Ref.24 Ref.26 Ref.36 Ref.42 Ref.46 Ref.47 Ref.48 Ref.52 Ref.56 Defects in MECP2 are the cause of Rett syndrome (RTT) [MIM:312750]. RTT is an X-linked dominant disease, it is a progressive neurologic developmental disorder and one of the most common causes of mental retardation in females. Patients appear to develop normally until 6 to 18 months of age, then gradually lose speech and purposeful hand movements and develop microcephaly, seizures, autism, ataxia, intermittent hyperventilation, and stereotypic hand movements. After initial regression, the condition stabilizes and patients usually survive into adulthood. Ref.34 Ref.38 Ref.47 Ref.5 Ref.22 Ref.23 Ref.25 Ref.27 Ref.28 Ref.29 Ref.30 Ref.31 Ref.32 Ref.33 Ref.35 Ref.37 Ref.40 Ref.41 Ref.49 Ref.50 Ref.51 Ref.54 Defects in MECP2 may be the cause of susceptibility to X-linked autism 3 (AUTSX3) [MIM:300496]. AUTSX3 is a pervasive developmental disorder (PDD), prototypically characterized by impairments in reciprocal social interaction and communication, restricted and stereotyped patterns of interests and activities, and the presence of developmental abnormalities by 3 years of age. Ref.53 Defects in MECP2 are the cause of neonatal severe encephalopathy due to MECP2 mutations [MIM:300673]. The MECP2 gene is mutated in Rett syndrome, a severe neurodevelopmental disorder that almost always occurs in females. Although it was first thought that MECP2 mutations causing Rett syndrome were lethal in males, later reports identified a severe neonatal encephalopathy in surviving male sibs of patients with Rett syndrome. Additional reports have confirmed a severe phenotype in males with Rett syndrome-associated MECP2 mutations. A chromosomal duplication involving MECP2 is the cause of mental retardation syndromic X-linked Lubs type (MRXSL) [MIM:300260]. Increased dosage of MECP2 appears to be responsible for the mental retardation phenotype. The main features present in affected males are severe to profound mental retardation with onset at birth, axial and facial hypotonia, progressive spasticity predominantly at the lower limbs, seizures and recurrent infections. Ref.55 |
| Sequence similarities | Contains 2 A.T hook DNA-binding domains. Contains 1 MBD (methyl-CpG-binding) domain. |
Ontologies
Alternative products
| This entry describes 2 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform A (identifier: P51608-1) Also known as: Beta; This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform B (identifier: P51608-2) Also known as: Alpha; The sequence of this isoform differs from the canonical sequence as follows: 1-9: MVAGMLGLR → MAAAAAAAPSGGGGGGEEERL | ||||||
| Note: Ten times higher expression levels than isoform A in brain. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||||||||||
Molecule processing | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 486 | 486 | Methyl-CpG-binding protein 2 | PRO_0000096345 | |||||||||||||||
Regions | |||||||||||||||||||
| Domain | 90 – 162 | 73 | MBD | ||||||||||||||||
| DNA binding | 185 – 197 | 13 | A.T hook 1 | ||||||||||||||||
| DNA binding | 265 – 277 | 13 | A.T hook 2 | ||||||||||||||||
| Compositional bias | 366 – 372 | 7 | His-rich | ||||||||||||||||
| Compositional bias | 376 – 405 | 30 | Pro-rich | ||||||||||||||||
Amino acid modifications | |||||||||||||||||||
| Modified residue | 80 | 1 | Phosphoserine Ref.13 Ref.16 Ref.17 Ref.18 Ref.19 | ||||||||||||||||
| Modified residue | 116 | 1 | Phosphoserine Ref.17 | ||||||||||||||||
| Modified residue | 229 | 1 | Phosphoserine By similarity | ||||||||||||||||
| Modified residue | 423 | 1 | Phosphoserine By similarity | ||||||||||||||||
| Modified residue | 426 | 1 | Phosphoserine Ref.17 | ||||||||||||||||
| Modified residue | 449 | 1 | N6-acetyllysine Ref.20 | ||||||||||||||||
Natural variations | |||||||||||||||||||
| Alternative sequence | 1 – 9 | 9 | MVAGMLGLR → MAAAAAAAPSGGGGGGEEER L in isoform B. | VSP_022948 | |||||||||||||||
| Natural variant | 10 | 1 | E → Q in RTT. Ref.51 | VAR_018180 | |||||||||||||||
| Natural variant | 86 | 1 | S → C | VAR_018181 | |||||||||||||||
| Natural variant | 97 | 1 | D → E in RTT. Ref.30 | VAR_023552 | |||||||||||||||
| Natural variant | 97 | 1 | D → Y in RTT. Ref.41 | VAR_018182 | |||||||||||||||
| Natural variant | 100 | 1 | L → R in RTT. Ref.54 | VAR_023553 | |||||||||||||||
| Natural variant | 100 | 1 | L → V in RTT; dbSBP:rs28935168. dbSNP rs28935168. Ref.25 Ref.50 Ref.54 | VAR_017462 | |||||||||||||||
| Natural variant | 101 | 1 | P → H in RTT. Ref.27 | VAR_018183 | |||||||||||||||
| Natural variant | 101 | 1 | P → L in RTT. Ref.27 | VAR_018184 | |||||||||||||||
| Natural variant | 101 | 1 | P → R in RTT; also in a patient with Angelman syndrome and some typical RTT features. Ref.38 Ref.32 | VAR_010276 | |||||||||||||||
| Natural variant | 101 | 1 | P → S in RTT. Ref.40 | VAR_023554 | |||||||||||||||
| Natural variant | 101 | 1 | P → T in RTT. Ref.27 | VAR_018185 | |||||||||||||||
| Natural variant | 106 | 1 | R → Q in RTT. Ref.25 Ref.28 | VAR_018186 | |||||||||||||||
| Natural variant | 106 | 1 | R → W in RTT. dbSNP rs28934907. Ref.22 Ref.23 Ref.25 Ref.27 Ref.30 Ref.31 Ref.32 Ref.35 Ref.37 Ref.40 Ref.41 Ref.54 | VAR_010272 | |||||||||||||||
| Natural variant | 111 | 1 | R → G in RTT. Ref.37 | VAR_018187 | |||||||||||||||
| Natural variant | 120 | 1 | Y → D in RTT. Ref.34 | VAR_023555 | |||||||||||||||
| Natural variant | 124 | 1 | L → F in RTT. Ref.31 | VAR_010277 | |||||||||||||||
| Natural variant | 128 | 1 | Q → P in RTT. Ref.51 | VAR_018188 | |||||||||||||||
| Natural variant | 133 | 1 | R → C in RTT. dbSNP rs28934904. Ref.34 Ref.22 Ref.23 Ref.25 Ref.27 Ref.30 Ref.31 Ref.37 Ref.40 Ref.41 Ref.49 Ref.51 Ref.54 | VAR_010273 | |||||||||||||||
| Natural variant | 133 | 1 | R → H in RTT. Ref.33 Ref.41 | VAR_018189 | |||||||||||||||
| Natural variant | 134 | 1 | S → C in RTT. Ref.27 Ref.31 Ref.35 Ref.40 | VAR_010278 | |||||||||||||||
| Natural variant | 135 | 1 | K → E in RTT. Ref.37 | VAR_018190 | |||||||||||||||
| Natural variant | 137 | 1 | E → G in MRXS13. Ref.36 | VAR_017581 | |||||||||||||||
| Natural variant | 140 | 1 | A → V in MRXS13. dbSNP rs28934908. Ref.26 Ref.36 Ref.42 Ref.46 Ref.47 Ref.48 | VAR_010279 | |||||||||||||||
| Natural variant | 152 | 1 | P → R in RTT. Ref.25 Ref.27 Ref.31 Ref.35 Ref.37 Ref.40 Ref.41 Ref.51 Ref.54 | VAR_010280 | |||||||||||||||
| Natural variant | 155 | 1 | F → I in RTT. Ref.30 | VAR_023556 | |||||||||||||||
| Natural variant | 155 | 1 | F → S in RTT. dbSNP rs28934905. Ref.22 Ref.23 Ref.25 | VAR_010274 | |||||||||||||||
| Natural variant | 156 | 1 | D → G in RTT. Ref.37 | VAR_018191 | |||||||||||||||
| Natural variant | 158 | 1 | T → A in RTT. Ref.40 Ref.54 | VAR_023557 | |||||||||||||||
| Natural variant | 158 | 1 | T → M in RTT. dbSNP rs28934906. Ref.34 Ref.22 Ref.23 Ref.25 Ref.27 Ref.28 Ref.29 Ref.30 Ref.31 Ref.32 Ref.35 Ref.37 Ref.40 Ref.41 Ref.49 Ref.51 Ref.54 | VAR_010275 | |||||||||||||||
| Natural variant | 161 | 1 | G → V in RTT. Ref.54 | VAR_023558 | |||||||||||||||
| Natural variant | 167 | 1 | R → W in MRXS13. Ref.36 | VAR_018192 | |||||||||||||||
| Natural variant | 181 | 1 | A → V | VAR_018193 | |||||||||||||||
| Natural variant | 196 | 1 | T → S | VAR_018194 | |||||||||||||||
| Natural variant | 197 | 1 | T → M | VAR_018195 | |||||||||||||||
| Natural variant | 201 | 1 | A → V | VAR_010281 | |||||||||||||||
| Natural variant | 203 | 1 | T → M | VAR_018196 | |||||||||||||||
| Natural variant | 210 | 1 | K → I in RTT. Ref.37 | VAR_018197 | |||||||||||||||
| Natural variant | 225 | 1 | P → L in MRXS13. Ref.52 | VAR_037664 | |||||||||||||||
| Natural variant | 225 | 1 | P → R in RTT. Ref.27 | VAR_018198 | |||||||||||||||
| Natural variant | 228 | 1 | T → S | VAR_018199 | |||||||||||||||
| Natural variant | 229 | 1 | S → L | VAR_018200 | |||||||||||||||
| Natural variant | 232 | 1 | G → A | VAR_018201 | |||||||||||||||
| Natural variant | 251 | 1 | P → L | VAR_018202 | |||||||||||||||
| Natural variant | 284 | 1 | K → E in MRXS13. Ref.36 | VAR_018203 | |||||||||||||||
| Natural variant | 287 | 1 | A → P | VAR_018204 | |||||||||||||||
| Natural variant | 291 | 1 | S → A | VAR_018205 | |||||||||||||||
| Natural variant | 302 | 1 | P → A in RTT. Ref.35 | VAR_018206 | |||||||||||||||
| Natural variant | 302 | 1 | P → H in RTT. Ref.29 | VAR_018207 | |||||||||||||||
| Natural variant | 302 | 1 | P → L in RTT. Ref.27 | VAR_018208 | |||||||||||||||
| Natural variant | 302 | 1 | P → R in RTT. Ref.28 Ref.37 | VAR_018209 | |||||||||||||||
| Natural variant | 305 | 1 | K → R in RTT. Ref.25 Ref.41 | VAR_018210 | |||||||||||||||
| Natural variant | 306 | 1 | R → C in RTT. dbSNP rs28935468. Ref.34 Ref.22 Ref.25 Ref.27 Ref.28 Ref.29 Ref.30 Ref.31 Ref.32 Ref.35 Ref.37 Ref.41 Ref.49 Ref.51 Ref.54 | VAR_010282 | |||||||||||||||
| Natural variant | 306 | 1 | R → H in RTT. Ref.25 Ref.27 Ref.54 | VAR_018211 | |||||||||||||||
| Natural variant | 322 | 1 | P → A in RTT. Ref.28 Ref.35 | VAR_018212 | |||||||||||||||
| Natural variant | 322 | 1 | P → L in RTT. Ref.41 | VAR_018213 | |||||||||||||||
| Natural variant | 322 | 1 | P → S in MRXS13. Ref.56 | VAR_037665 | |||||||||||||||
| Natural variant | 344 | 1 | R → W in RTT. Ref.47 | VAR_018214 | |||||||||||||||
| Natural variant | 359 | 1 | S → P | VAR_018215 | |||||||||||||||
| Natural variant | 376 | 1 | P → S in a RTT patient; could be a polymorphism. Ref.47 Ref.29 Ref.49 Ref.45 | VAR_018216 | |||||||||||||||
| Natural variant | 388 | 1 | P → L | VAR_023559 | |||||||||||||||
| Natural variant | 388 | 1 | P → S in a RTT patient. Ref.49 | VAR_018218 | |||||||||||||||
| Natural variant | 388 | 1 | Missing | VAR_018217 | |||||||||||||||
| Natural variant | 394 | 1 | E → K | VAR_018219 | |||||||||||||||
| Natural variant | 397 | 1 | E → K: dbSNP rs56268439. Ref.22 Ref.25 Ref.32 Ref.35 Ref.43 | VAR_010283 | |||||||||||||||
| Natural variant | 399 | 1 | P → L in MRXS13; could be a rare polymorphism. Ref.36 Ref.47 | VAR_018220 | |||||||||||||||
| Natural variant | 402 | 1 | P → L | VAR_018221 | |||||||||||||||
| Natural variant | 412 | 1 | V → I | VAR_018222 | |||||||||||||||
| Natural variant | 428 | 1 | G → S in neonatal severe encephalopathy due to MECP2 mutations; could be a rare polymorphism. Ref.47 Ref.39 | VAR_017463 | |||||||||||||||
| Natural variant | 439 | 1 | A → T | VAR_018223 | |||||||||||||||
| Natural variant | 444 | 1 | A → T | VAR_018224 | |||||||||||||||
| Natural variant | 453 | 1 | R → Q in MRXS13. Ref.36 | VAR_018225 | |||||||||||||||
| Natural variant | 480 | 1 | P → S | VAR_018226 | |||||||||||||||
Experimental info | |||||||||||||||||||
| Sequence conflict | 72 – 75 | 4 | PAVP → RLC Ref.10 | ||||||||||||||||
| Sequence conflict | 290 | 1 | E → G in CAA68001. Ref.2 | ||||||||||||||||
| Sequence conflict | 466 | 1 | M → V in CAD97991. Ref.7 | ||||||||||||||||
Secondary structure | |||||||||||||||||||
Helix Strand Turn | |||||||||||||||||||
| Beta strand | 105 – 110 | 6 | |||||||||||||||||
| Turn | 115 – 118 | 4 | |||||||||||||||||
| Beta strand | 120 – 125 | 6 | |||||||||||||||||
| Helix | 135 – 145 | 11 | |||||||||||||||||
| Turn | 152 – 154 | 3 | |||||||||||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Methyl-CpG-binding protein MeCP2 represses Sp1-activated transcription of the human leukosialin gene when the promoter is methylated." Kudo S. Mol. Cell. Biol. 18:5492-5499(1998) [PubMed: 9710633] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM A). |
| [2] | "Assignment of the gene for methyl-CpG-binding protein 2 (MECP2) to human chromosome band Xq28 by in situ hybridization." Vilain A., Apiou F., Vogt N., Dutrillaux B., Malfoy B. Cytogenet. Cell Genet. 74:293-294(1996) [PubMed: 8976388] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM A). |
| [3] | "A complex pattern of evolutionary conservation and alternative polyadenylation within the long 3'-untranslated region of the methyl-CpG-binding protein 2 gene (MeCP2) suggests a regulatory role in gene expression." Coy J.F., Sedlacek Z., Baechner D., Delius H., Poustka A. Hum. Mol. Genet. 8:1253-1262(1999) [PubMed: 10369871] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM A). |
| [4] | "Comparative sequence analysis of the MECP2-locus in human and mouse reveals new transcribed regions." Reichwald K., Thiesen J., Wiehe T., Weitzel J., Poustka W.A., Rosenthal A., Platzer M., Stratling W.H., Kioschis P. Mamm. Genome 11:182-190(2000) [PubMed: 10723722] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM A). |
| [5] | "A previously unidentified MECP2 open reading frame defines a new protein isoform relevant to Rett syndrome." Mnatzakanian G.N., Lohi H., Munteanu I., Alfred S.E., Yamada T., MacLeod P.J.M., Jones J.R., Scherer S.W., Schanen N.C., Friez M.J., Vincent J.B., Minassian B.A. Nat. Genet. 36:339-341(2004) [PubMed: 15034579] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM B), INVOLVEMENT IN RTT. |
| [6] | Straetling W.H. Submitted (APR-1997) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM A). Tissue: Placenta. |
| [7] | "The full-ORF clone resource of the German cDNA consortium." Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H., Heubner D., Hoerlein A., Michel G., Wedler H., Koehrer K., Ottenwaelder B., Poustka A., Wiemann S., Schupp I. BMC Genomics 8:399-399(2007) [PubMed: 17974005] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM B). Tissue: Colon endothelium. |
| [8] | "The DNA sequence of the human X chromosome." Ross M.T., Grafham D.V., Coffey A.J., Scherer S., McLay K., Muzny D., Platzer M., Howell G.R., Burrows C., Bird C.P., Frankish A., Lovell F.L., Howe K.L., Ashurst J.L., Fulton R.S., Sudbrak R., Wen G., Jones M.C. Bentley D.R.Nature 434:325-337(2005) [PubMed: 15772651] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [9] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM A). Tissue: Placenta. |
| [10] | "Isolation, physical mapping, and Northern analysis of the X-linked human gene encoding methyl CpG-binding protein, MECP2." D'Esposito M., Quaderi N.A., Ciccodicola A., Bruni P., Esposito T., D'Urso M., Brown S.D.M. Mamm. Genome 7:533-535(1996) [PubMed: 8672133] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 10-486 (ISOFORM A). Tissue: Skeletal muscle. |
| [11] | "Genetic organization of human methyl-CpG-binding protein 2." Reichwald K., Bauer D., Brenner V., Drescher B., Coy J.F., Kioschis P., Korn B., Nyakatura G., Platzer M., Poustka A., Sandoval N., Rosenthal A. Submitted (DEC-1996) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 10-486 (ISOFORM A). |
| [12] | "The major form of MeCP2 has a novel N-terminus generated by alternative splicing." Kriaucionis S., Bird A. Nucleic Acids Res. 32:1818-1823(2004) [PubMed: 15034150] [Abstract] Cited for: IDENTIFICATION (ISOFORM B). |
| [13] | "Large-scale characterization of HeLa cell nuclear phosphoproteins." Beausoleil S.A., Jedrychowski M., Schwartz D., Elias J.E., Villen J., Li J., Cohn M.A., Cantley L.C., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 101:12130-12135(2004) [PubMed: 15302935] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-80, MASS SPECTROMETRY. Tissue: Epithelium. |
| [14] | "Mutations and polymorphisms in the human methyl CpG-binding protein MECP2." Miltenberger-Miltenyi G., Laccone F. Hum. Mutat. 22:107-115(2003) [PubMed: 12872250] [Abstract] Cited for: REVIEW ON VARIANTS. |
| [15] | "CDKL5 belongs to the same molecular pathway of MeCP2 and it is responsible for the early-onset seizure variant of Rett syndrome." Mari F., Azimonti S., Bertani I., Bolognese F., Colombo E., Caselli R., Scala E., Longo I., Grosso S., Pescucci C., Ariani F., Hayek G., Balestri P., Bergo A., Badaracco G., Zappella M., Broccoli V., Renieri A., Kilstrup-Nielsen C., Landsberger N. Hum. Mol. Genet. 14:1935-1946(2005) [PubMed: 15917271] [Abstract] Cited for: INTERACTION WITH CDKL5. |
| [16] | "Phosphorylation analysis of primary human T lymphocytes using sequential IMAC and titanium oxide enrichment." Carrascal M., Ovelleiro D., Casas V., Gay M., Abian J. J. Proteome Res. 7:5167-5176(2008) [PubMed: 19367720] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-80, MASS SPECTROMETRY. Tissue: T-cell. |
| [17] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed: 18669648] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-80; SER-116 AND SER-426, MASS SPECTROMETRY. |
| [18] | "Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach." Gauci S., Helbig A.O., Slijper M., Krijgsveld J., Heck A.J., Mohammed S. Anal. Chem. 81:4493-4501(2009) [PubMed: 19413330] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-80, MASS SPECTROMETRY. |
| [19] | "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions." Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K. Sci. Signal. 2:RA46-RA46(2009) [PubMed: 19690332] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-80, MASS SPECTROMETRY. Tissue: T-cell. |
| [20] | "Lysine acetylation targets protein complexes and co-regulates major cellular functions." Choudhary C., Kumar C., Gnad F., Nielsen M.L., Rehman M., Walther T., Olsen J.V., Mann M. Science 325:834-840(2009) [PubMed: 19608861] [Abstract] Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-449, MASS SPECTROMETRY. |
| [21] | "The solution structure of the domain from MeCP2 that binds to methylated DNA." Wakefield R.I., Smith B.O., Nan X., Free A., Soteriou A., Uhrin D., Bird A.P., Barlow P.N. J. Mol. Biol. 291:1055-1065(1999) [PubMed: 10518942] [Abstract] Cited for: STRUCTURE BY NMR OF 77-166. |
| [22] | "Rett syndrome and beyond: recurrent spontaneous and familial MECP2 mutations at CpG hotspots." Wan M., Lee S.S.J., Zhang X., Houwink-Manville I., Song H.-R., Amir R.E., Budden S., Naidu S., Pereira J.L.P., Lo I.F.M., Zoghbi H.Y., Schanen N.C., Francke U. Am. J. Hum. Genet. 65:1520-1529(1999) [PubMed: 10577905] [Abstract] Cited for: VARIANTS RTT TRP-106; CYS-133; SER-155; MET-158 AND CYS-306, VARIANT LYS-397. |
| [23] | "Rett syndrome is caused by mutations in X-linked MECP2, encoding methyl-CpG-binding protein 2." Amir R.E., Van den Veyver I.B., Wan M., Tran C.Q., Francke U., Zoghbi H.Y. Nat. Genet. 23:185-188(1999) [PubMed: 10508514] [Abstract] Cited for: VARIANTS RTT TRP-106; CYS-133; SER-155 AND MET-158. |
| [24] | "A mutation in the Rett syndrome gene, MECP2, causes X-linked mental retardation and progressive spasticity in males." Meloni I., Bruttini M., Longo I., Mari F., Rizzolio F., D'Adamo P., Denvriendt K., Fryns J.-P., Toniolo D., Renieri A. Am. J. Hum. Genet. 67:982-985(2000) [PubMed: 10986043] [Abstract] Cited for: INVOLVEMENT IN MRXS13. |
| [25] | "Diagnostic testing for Rett syndrome by DHPLC and direct sequencing analysis of the MECP2 gene: identification of several novel mutations and polymorphisms." Buyse I.M., Fang P., Hoon K.T., Amir R.E., Zoghbi H.Y., Roa B.B. Am. J. Hum. Genet. 67:1428-1436(2000) [PubMed: 11055898] [Abstract] Cited for: VARIANTS RTT VAL-100; GLN-106; TRP-106; CYS-133; ARG-152; SER-155; MET-158; ARG-305; CYS-306 AND HIS-306, VARIANTS CYS-86; MET-203; PRO-287; ALA-291; LYS-397; ILE-412 AND THR-444. |
| [26] | "MECP2 mutation in male patients with non-specific X-linked mental retardation." Orrico A., Lam C., Galli L., Dotti M.T., Hayek G., Tong S.F., Poon P.M., Zappella M., Federico A., Sorrentino V. FEBS Lett. 481:285-288(2000) [PubMed: 11007980] [Abstract] Cited for: VARIANT MRXS13 VAL-140, VARIANT MET-203. |
| [27] | "Long-read sequence analysis of the MECP2 gene in Rett syndrome patients: correlation of disease severity with mutation type and location." Cheadle J.P., Gill H., Fleming N., Maynard J., Kerr A., Leonard H., Krawczak M., Cooper D.N., Lynch S., Thomas N., Hughes H., Hulten M., Ravine D., Sampson J.R., Clarke A. Hum. Mol. Genet. 9:1119-1129(2000) [PubMed: 10767337] [Abstract] Cited for: VARIANTS RTT LEU-101; HIS-101; THR-101; TRP-106; CYS-133; CYS-134; ARG-152; MET-158; ARG-225; LEU-302; CYS-306 AND HIS-306, VARIANTS LEU-229 AND THR-439. |
| [28] | "MECP2 mutations account for most cases of typical forms of Rett syndrome." Bienvenu T., Carrie A., de Roux N., Vinet M.-C., Jonveaux P., Couvert P., Villard L., Arzimanoglou A., Beldjord C., Fontes M., Tardieu M., Chelly J. Hum. Mol. Genet. 9:1377-1384(2000) [PubMed: 10814719] [Abstract] Cited for: VARIANTS RTT GLN-106; MET-158; ARG-302; CYS-306 AND ALA-322. |
| [29] | "Mutational analysis of the MECP2 gene in Japanese patients with Rett syndrome." Amano K., Nomura Y., Segawa M., Yamakawa K. J. Hum. Genet. 45:231-236(2000) [PubMed: 10944854] [Abstract] Cited for: VARIANTS RTT MET-158; HIS-302 AND CYS-306, VARIANTS VAL-201; ALA-232; LEU-251 AND SER-376. |
| [30] | "Mutation screening in Rett syndrome patients." Xiang F., Buervenich S., Nicolao P., Bailey M.E., Zhang Z., Anvret M. J. Med. Genet. 37:250-255(2000) [PubMed: 10745042] [Abstract] Cited for: VARIANTS RTT GLU-97; TRP-106; CYS-133; ILE-155; MET-158 AND CYS-306. |
| [31] | "Mutation analysis of the methyl-CpG binding protein 2 gene (MECP2) in patients with Rett syndrome." Obata K., Matsuishi T., Yamashita Y., Fukuda T., Kuwajima K., Horiuchi I., Nagamitsu S., Iwanaga R., Kimura A., Omori I., Endo S., Mori K., Kondo I. J. Med. Genet. 37:608-610(2000) [PubMed: 10991688] [Abstract] Cited for: VARIANTS RTT TRP-106; PHE-124; CYS-133; CYS-134; ARG-152; MET-158 AND CYS-306. |
| [32] | "Mutations in the MECP2 gene in a cohort of girls with Rett syndrome." Hampson K., Woods C.G., Latif F., Webb T. J. Med. Genet. 37:610-612(2000) [PubMed: 10991689] [Abstract] Cited for: VARIANTS RTT ARG-101; TRP-106; MET-158 AND CYS-306, VARIANT LYS-397. |
| [33] | "Classic Rett syndrome in a boy as a result of somatic mosaicism for a MECP2 mutation." Armstrong J., Poo P., Pineda M., Aibar E., Gean E., Catala V., Monros E. Ann. Neurol. 50:692-692(2001) [PubMed: 11706982] [Abstract] Cited for: VARIANT RTT HIS-133. |
| [34] | "Mutational analysis of MECP2 in Japanese patients with atypical Rett syndrome." Inui K., Akagi M., Ono J., Tsukamoto H., Shimono K., Mano T., Imai K., Yamada M., Muramatsu T., Sakai N., Okada S. Brain Dev. 23:212-215(2001) [PubMed: 11376998] [Abstract] Cited for: VARIANTS RTT ASP-120; CYS-133; MET-158 AND CYS-306. |
| [35] | "Spectrum and distribution of MECP2 mutations in 64 Italian Rett syndrome girls: tentative genotype/phenotype correlation." Giunti L., Pelagatti S., Lazzerini V., Guarducci S., Lapi E., Coviello S., Cecconi A., Ombroni L., Andreucci E., Sani I., Brusaferri A., Lasagni A., Ricotti G., Giometto B., Nicolao P., Gasparini P., Granatiero M., Giovannucci Uzielli M.L. Brain Dev. 23:S242-S245(2001) [PubMed: 11738883] [Abstract] Cited for: VARIANTS RTT TRP-106; CYS-134; ARG-152; MET-158; ALA-302; CYS-306 AND ALA-322, VARIANTS VAL-201 AND LYS-397. |
| [36] | "MECP2 is highly mutated in X-linked mental retardation." Couvert P., Bienvenu T., Aquaviva C., Poirier K., Moraine C., Gendrot C., Verloes A., Andres C., Le Fevre A.C., Souville I., Steffann J., des Portes V., Ropers H.-H., Yntema H.G., Fryns J.-P., Briault S., Chelly J., Cherif B. Hum. Mol. Genet. 10:941-946(2001) [PubMed: 11309367] [Abstract] Cited for: VARIANTS MRXS13 GLY-137; VAL-140; TRP-167; GLU-284; LEU-399 AND GLN-453. |
| [37] | "Mutation spectrum in patients with Rett syndrome in the German population: evidence of hot spot regions." Laccone F., Huppke P., Hanefeld F., Meins M. Hum. Mutat. 17:183-190(2001) [PubMed: 11241840] [Abstract] Cited for: VARIANTS RTT TRP-106; GLY-111; CYS-133; GLU-135; ARG-152; GLY-156; MET-158; ILE-210; ARG-302 AND CYS-306. |
| [38] | "Angelman syndrome phenotype associated with mutations in MECP2, a gene encoding a methyl CpG binding protein." Watson P., Black G., Ramsden S., Barrow M., Super M., Kerr B., Clayton-Smith J. J. Med. Genet. 38:224-228(2001) [PubMed: 11283202] [Abstract] Cited for: VARIANT RTT ARG-101, INVOLVEMENT IN AS. |
| [39] | "MECP2 mutation in non-fatal, non-progressive encephalopathy in a male." Imessaoudene B., Bonnefont J.-P., Royer G., Cormier-Daire V., Lyonnet S., Lyon G., Munnich A., Amiel J. J. Med. Genet. 38:171-174(2001) [PubMed: 11238684] [Abstract] Cited for: VARIANT NONPROGRESSIVE ENCEPHALOPATHY SER-428. |
| [40] | "Mutation analysis of the MECP2 gene in British and Italian Rett syndrome females." Vacca M., Filippini F., Budillon A., Rossi V., Mercadante G., Manzati E., Gualandi F., Bigoni S., Trabanelli C., Pini G., Calzolari E., Ferlini A., Meloni I., Hayek G., Zappella M., Renieri A., D'Urso M., D'Esposito M. Hulten M.J. Mol. Med. 78:648-655(2001) [PubMed: 11269512] [Abstract] Cited for: VARIANTS RTT SER-101; TRP-106; CYS-133; CYS-134; ARG-152; ALA-158 AND MET-158. |
| [41] | "MeCP2 mutations in children with and without the phenotype of Rett syndrome." Hoffbuhr K., Devaney J.M., LaFleur B., Sirianni N., Scacheri C., Giron J., Schuette J., Innis J., Marino M., Philippart M., Narayanan V., Umansky R., Kronn D., Hoffman E.P., Naidu S. Neurology 56:1486-1495(2001) [PubMed: 11402105] [Abstract] Cited for: VARIANTS RTT TYR-97; TRP-106; HIS-133; CYS-133; ARG-152; MET-158; ARG-305; CYS-306 AND LEU-322, VARIANT MET-197. |
| [42] | "A mutation hot spot for nonspecific X-linked mental retardation in the MECP2 gene causes the PPM-X syndrome." Klauck S.M., Lindsay S., Beyer K.S., Splitt M., Burn J., Poustka A. Am. J. Hum. Genet. 70:1034-1037(2002) [PubMed: 11885030] [Abstract] Cited for: VARIANT MRXS13 VAL-140. |
| [43] | "Polymorphisms in the C-terminal domain of MECP2 in mentally handicapped boys: implications for genetic counselling." Moncla A., Kpebe A., Missirian C., Mancini J., Villard L. Eur. J. Hum. Genet. 10:86-89(2002) [PubMed: 11896461] [Abstract] Cited for: VARIANTS PRO-359 AND LYS-397. |
| [44] | "Low frequency of MECP2 mutations in mentally retarded males." Yntema H.G., Kleefstra T., Oudakker A.R., Romein T., de Vries B.B.A., Nillesen W., Sistermans E.A., Brunner H.G., Hamel B.C.J., van Bokhoven H. Eur. J. Hum. Genet. 10:487-490(2002) [PubMed: 12111644] [Abstract] Cited for: VARIANTS SER-196; SER-228; LYS-394 AND SER-480. |
| [45] | "Mutation analysis of the coding sequence of the MECP2 gene in infantile autism." Beyer K.S., Blasi F., Bacchelli E., Klauck S.M., Maestrini E., Poustka A. Hum. Genet. 111:305-309(2002) [PubMed: 12384770] [Abstract] Cited for: VARIANTS VAL-181; SER-376; PRO-388 DEL AND LEU-402. |
| [46] | "Identification of a family with nonspecific mental retardation (MRX79) with the A140V mutation in the MECP2 gene: is there a need for routine screening?" Winnepenninckx B., Errijgers V., Hayez-Delatte F., Reyniers E., Kooy R.F. Hum. Mutat. 20:249-252(2002) [PubMed: 12325019] [Abstract] Cited for: VARIANT MRXS13 VAL-140. |
| [47] | "MECP2 gene nucleotide changes and their pathogenicity in males: proceed with caution." Laccone F., Zoll B., Huppke P., Hanefeld F., Pepinski W., Trappe R. J. Med. Genet. 39:586-588(2002) [PubMed: 12161600] [Abstract] Cited for: VARIANT MRXS13 VAL-140, VARIANT RTT TRP-344, VARIANTS MET-197; SER-376; LEU-399 AND SER-428, DISCUSSION OF PATHOGENIC ROLE. |
| [48] | "A Rett syndrome MECP2 mutation that causes mental retardation in men." Dotti M.T., Orrico A., De Stefano N., Battisti C., Sicurelli F., Severi S., Lam C.-W., Galli L., Sorrentino V., Federico A. Neurology 58:226-230(2002) [PubMed: 11805248] [Abstract] Cited for: VARIANT MRXS13 VAL-140. |
| [49] | "Mutation analysis of the MECP2 gene in patients with Rett syndrome." Conforti F.L., Mazzei R., Magariello A., Patitucci A.L., Gabriele A.L., Muglia M., Quattrone A., Fiumara A., Pavone L., Barone R., Nistico R., Mangone L. Am. J. Med. Genet. A 117:184-187(2003) [PubMed: 12567420] [Abstract] Cited for: VARIANTS RTT CYS-133; MET-158 AND CYS-306, VARIANTS SER-376 AND SER-388. |
| [50] | "Rett syndrome in a 47,XXX patient with a de novo MECP2 mutation." Hammer S., Dorrani N., Hartiala J., Stein S., Schanen N.C. Am. J. Med. Genet. A 122:223-226(2003) [PubMed: 12966522] [Abstract] Cited for: VARIANT RTT VAL-100. |
| [51] | "Rett syndrome in adolescent and adult females: clinical and molecular genetic findings." Smeets E., Schollen E., Moog U., Matthijs G., Herbergs J., Smeets H., Curfs L., Schrander-Stumpel C., Fryns J.-P. Am. J. Med. Genet. A 122:227-233(2003) [PubMed: 12966523] [Abstract] Cited for: VARIANTS RTT GLN-10; PRO-128; CYS-133; ARG-152; MET-158 AND CYS-306. |
| [52] | "Neurodevelopmental disorders in males related to the gene causing Rett syndrome in females (MECP2)." Moog U., Smeets E.E.J., van Roozendaal K.E.P., Schoenmakers S., Herbergs J., Schoonbrood-Lenssen A.M.J., Schrander-Stumpel C.T.R.M. Eur. J. Paediatr. Neurol. 7:5-12(2003) [PubMed: 12615169] [Abstract] Cited for: VARIANT MRXS13 LEU-225. |
| [53] | "Identification of MeCP2 mutations in a series of females with autistic disorder." Carney R.M., Wolpert C.M., Ravan S.A., Shahbazian M., Ashley-Koch A., Cuccaro M.L., Vance J.M., Pericak-Vance M.A. Pediatr. Neurol. 28:205-211(2003) [PubMed: 12770674] [Abstract] Cited for: INVOLVEMENT IN AUTSX3. |
| [54] | "Phenotypic manifestations of MECP2 mutations in classical and atypical Rett syndrome." Schanen C., Houwink E.J.F., Dorrani N., Lane J., Everett R., Feng A., Cantor R.M., Percy A. Am. J. Med. Genet. A 126:129-140(2004) [PubMed: 15057977] [Abstract] Cited for: VARIANTS RTT ARG-100; VAL-100; TRP-106; CYS-133; ARG-152; ALA-158; MET-158; VAL-161; CYS-306 AND HIS-306. |
| [55] | "Duplication of the MECP2 region is a frequent cause of severe mental retardation and progressive neurological symptoms in males." Van Esch H., Bauters M., Ignatius J., Jansen M., Raynaud M., Hollanders K., Lugtenberg D., Bienvenu T., Jensen L.R., Gecz J., Moraine C., Marynen P., Fryns J.-P., Froyen G. Am. J. Hum. Genet. 77:442-453(2005) [PubMed: 16080119] [Abstract] Cited for: INVOLVEMENT IN MRXSL. |
| [56] | "A novel familial MECP2 mutation in a young boy: clinical and molecular findings." Ventura P., Galluzzi R., Bacca S.M., Giorda R., Massagli A. Neurology 67:867-868(2006) [PubMed: 16966553] [Abstract] Cited for: VARIANT MRXS13 SER-322. |
| + | Additional computationally mapped references. |
Web resources
| RettBASE IRSA MECP2 variation database |
| GeneDis Rett syndrome website |
| GeneReviews |
Cross-references
Sequence databases | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | L37298 mRNA. Translation: AAC32737.1. X99686 mRNA. Translation: CAA68001.1. AJ132917 mRNA. Translation: CAB46446.1. AF158180 mRNA. Translation: AAF33023.1. Y12643 mRNA. Translation: CAA73190.1. AY541280 mRNA. Translation: AAS55455.1. BX538060 mRNA. Translation: CAD97991.1. Different initiation. AF030876 Genomic DNA. Translation: AAC08757.1. BC011612 mRNA. Translation: AAH11612.1. X89430 mRNA. Translation: CAA61599.1. X94628 Genomic DNA. Translation: CAA64331.1. | ||||||||||||||||||
| IPI | IPI00418234. IPI00645192. | ||||||||||||||||||
| RefSeq | NP_001104262.1. NP_004983.1. | ||||||||||||||||||
| UniGene | Hs.200716 | ||||||||||||||||||
3D structure databases | |||||||||||||||||||
| PDBe RCSB PDB PDBj |
| ||||||||||||||||||
| SMR | P51608. Positions 71-195. | ||||||||||||||||||
| ModBase | Search... | ||||||||||||||||||
Protein-protein interaction databases | |||||||||||||||||||
| IntAct | P51608. 1 interaction. | ||||||||||||||||||
| STRING | P51608. | ||||||||||||||||||
PTM databases | |||||||||||||||||||
| PhosphoSite | P51608. | ||||||||||||||||||
Proteomic databases | |||||||||||||||||||
| PRIDE | P51608. | ||||||||||||||||||
Genome annotation databases | |||||||||||||||||||
| Ensembl | ENST00000303391; ENSP00000301948; ENSG00000169057; Homo sapiens. [Genome view] | ||||||||||||||||||
| GeneID | 4204. | ||||||||||||||||||
| KEGG | hsa:4204. | ||||||||||||||||||
| UCSC | uc004fjv.2. human. uc004fjw.2. human. | ||||||||||||||||||
Organism-specific databases | |||||||||||||||||||
| CTD | 4204. | ||||||||||||||||||
| GeneCards | GC0XM152940. | ||||||||||||||||||
| H-InvDB | HIX0017147. | ||||||||||||||||||
| HGNC | HGNC:6990. MECP2. | ||||||||||||||||||
| HPA | HPA000593. HPA001341. | ||||||||||||||||||
| MIM | 105830. phenotype. 300005. gene. 300055. phenotype. 300260. phenotype. 300496. phenotype. 300673. phenotype. 312750. phenotype. | ||||||||||||||||||
| Orphanet | 3095. Atypical Rett syndrome. 3077. Intellectual deficit, X-linked - psychosis - macroorchidism. 101685. Rare intellectual deficit without developmental anomaly. 778. Rett syndrome. 209370. Severe neonatal-onset encephalopathy with microcephaly. 1762. Trisomy Xq28. | ||||||||||||||||||
| PharmGKB | PA30729. | ||||||||||||||||||
| GenAtlas | Search... | ||||||||||||||||||
Phylogenomic databases | |||||||||||||||||||
| eggNOG | prNOG18317. | ||||||||||||||||||
| HOVERGEN | P51608. | ||||||||||||||||||
| OMA | GTARPKA. | ||||||||||||||||||
| OrthoDB | EOG9SN47X. | ||||||||||||||||||
| PhylomeDB | P51608. | ||||||||||||||||||
Gene expression databases | |||||||||||||||||||
| ArrayExpress | P51608. | ||||||||||||||||||
| Bgee | P51608. | ||||||||||||||||||
| CleanEx | HS_MECP2. | ||||||||||||||||||
| Genevestigator | P51608. | ||||||||||||||||||
| GermOnline | ENSG00000169057. Homo sapiens. | ||||||||||||||||||
Family and domain databases | |||||||||||||||||||
| InterPro | IPR017956. AT_hook_DNA-bd_motif. IPR016177. DNA-bd_integrase-typ. IPR017353. Methyl_CpG-bd_MeCP2. IPR001739. Methyl_CpG_DNA-bd. [Graphical view] | ||||||||||||||||||
| Gene3D | G3DSA:3.30.890.10. Methyl_CpG_DNA-bd. 1 hit. | ||||||||||||||||||
| Pfam | PF01429. MBD. 1 hit. [Graphical view] | ||||||||||||||||||
| PIRSF | PIRSF038006. Methyl_CpG_bd_MeCP2. 1 hit. | ||||||||||||||||||
| SMART | SM00384. AT_hook. 2 hits. SM00391. MBD. 1 hit. [Graphical view] | ||||||||||||||||||
| PROSITE | PS50982. MBD. 1 hit. [Graphical view] | ||||||||||||||||||
| ProtoNet | Search... | ||||||||||||||||||
Other Resources | |||||||||||||||||||
| NextBio | 16564. | ||||||||||||||||||
| SOURCE | Search... | ||||||||||||||||||
Entry information
| Entry name | MECP2_HUMAN | ||||||||
| Accession | Primary (citable) accession number: P51608 Secondary accession number(s): O15233, Q6QHH9, Q7Z384 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | HPI (Human Proteome Initiative) | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome X Human chromosome X: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with


