P51530 (DNA2_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 103.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: DNA replication ATP-dependent helicase/nuclease DNA2 Short name=hDNA2 Alternative name(s): DNA replication ATP-dependent helicase-like homolog | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 1060 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Key enzyme involved in DNA replication and DNA repair in nucleus and mitochondrion. Involved in Okazaki fragments processing by cleaving long flaps that escape FEN1: flaps that are longer than 27 nucleotides are coated by replication protein A complex (RPA), leading to recruit DNA2 which cleaves the flap until it is too short to bind RPA and becomes a substrate for FEN1. Also involved in 5'-end resection of DNA during double-strand break (DSB) repair: recruited by BLM and mediates the cleavage of 5'-ssDNA, while the 3'-ssDNA cleavage is prevented by the presence of RPA. Also involved in DNA replication checkpoint independently of Okazaki fragments processing. Possesses different enzymatic activities, such as single-stranded DNA (ssDNA)-dependent ATPase, 5'-3' helicase and endonuclease activities. While the ATPase and endonuclease activities are well-defined and play a key role in Okazaki fragments processing and DSB repair, the 5'-3' DNA helicase activity is subject to debate. According to various reports, the helicase activity is weak and its function remains largely unclear. Helicase activity may promote the motion of DNA2 on the flap, helping the nuclease function. Ref.4 Ref.5 Ref.6 Ref.7 Ref.10 Ref.11 Ref.12 Ref.13 |
| Catalytic activity | ATP + H2O = ADP + phosphate. Ref.5 |
| Cofactor | Binds 1 4Fe-4S cluster By similarity. |
| Subunit structure | |
| Subcellular location | Nucleus. Mitochondrion. Note: Was initially reported to be exclusively mitochondrial (Ref.6). However, it was later shown to localize both in mitochondrion and nucleus (Ref.7). Ref.6 Ref.7 |
| Post-translational modification | Acetylated by EP300, leading to stimulate the 5'-3' endonuclease, the 5'-3' helicase and DNA-dependent ATPase activities, possibly by increasing DNA substrate affinity. |
| Sequence similarities | Belongs to the DNA2/NAM7 helicase family. |
| Sequence caution | The sequence AAH28188.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened. The sequence AAH63664.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened. The sequence BAA07647.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened. The sequence CAI17237.1 differs from that shown. Reason: Erroneous gene model prediction. The sequence CAI17238.1 differs from that shown. Reason: Erroneous gene model prediction. |
Ontologies
Alternative products
| This entry describes 4 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: P51530-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: P51530-2) The sequence of this isoform differs from the canonical sequence as follows: 664-687: ILYACGFSVLLTSYTHSAVDNILL → FRRFIQLSSNLQSKKFADQSPLNP 688-1060: Missing. | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform 3 (identifier: P51530-3) The sequence of this isoform differs from the canonical sequence as follows: 663-900: Missing. | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform 4 (identifier: P51530-4) The sequence of this isoform differs from the canonical sequence as follows: 1040-1060: IDLPSREHESLCHILGDFQRE → SFFFCIWSHLIAL | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1060 | 1060 | DNA replication ATP-dependent helicase/nuclease DNA2 | PRO_0000080712 | |||||
Regions | |||||||||
| Nucleotide binding | 648 – 655 | 8 | ATP Potential | ||||||
| Region | 81 – 519 | 439 | Nuclease activity By similarity | ||||||
| Region | 520 – 1060 | 541 | Helicase activity By similarity | ||||||
Sites | |||||||||
| Metal binding | 136 | 1 | Iron-sulfur (4Fe-4S) By similarity | ||||||
| Metal binding | 393 | 1 | Iron-sulfur (4Fe-4S) By similarity | ||||||
| Metal binding | 396 | 1 | Iron-sulfur (4Fe-4S) By similarity | ||||||
| Metal binding | 402 | 1 | Iron-sulfur (4Fe-4S) By similarity | ||||||
Natural variations | |||||||||
| Alternative sequence | 663 – 900 | 238 | Missing in isoform 3. | VSP_021869 | |||||
| Alternative sequence | 664 – 687 | 24 | ILYAC…DNILL → FRRFIQLSSNLQSKKFADQS PLNP in isoform 2. | VSP_021870 | |||||
| Alternative sequence | 688 – 1060 | 373 | Missing in isoform 2. | VSP_021871 | |||||
| Alternative sequence | 1040 – 1060 | 21 | IDLPS…DFQRE → SFFFCIWSHLIAL in isoform 4. | VSP_044185 | |||||
Experimental info | |||||||||
| Mutagenesis | 277 | 1 | D → A: Abolishes ability to resect DNA in present of BLM. Ref.5 Ref.10 Ref.12 | ||||||
| Mutagenesis | 654 | 1 | K → E: Abolishes ability to unwind DNA, while it does not affect ability to resect DNA. Ref.5 Ref.10 Ref.11 Ref.12 | ||||||
| Sequence conflict | 986 | 1 | K → N in AAH28188. Ref.3 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Prediction of the coding sequences of unidentified human genes. III. The coding sequences of 40 new genes (KIAA0081-KIAA0120) deduced by analysis of cDNA clones from human cell line KG-1." Nagase T., Miyajima N., Tanaka A., Sazuka T., Seki N., Sato S., Tabata S., Ishikawa K., Kawarabayasi Y., Kotani H., Nomura N. DNA Res. 2:37-43(1995) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). Tissue: Bone marrow. |
| [2] | "The DNA sequence and comparative analysis of human chromosome 10." Deloukas P., Earthrowl M.E., Grafham D.V., Rubenfield M., French L., Steward C.A., Sims S.K., Jones M.C., Searle S., Scott C., Howe K., Hunt S.E., Andrews T.D., Gilbert J.G.R., Swarbreck D., Ashurst J.L., Taylor A., Battles J. Rogers J.Nature 429:375-381(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [3] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 2 AND 3), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 680-1060 (ISOFORM 4), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 567-1060 (ISOFORM 1). Tissue: Colon, Duodenum and Lymph. |
| [4] | "Isolation of human Dna2 endonuclease and characterization of its enzymatic properties." Kim J.H., Kim H.D., Ryu G.H., Kim D.H., Hurwitz J., Seo Y.S. Nucleic Acids Res. 34:1854-1864(2006) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION. |
| [5] | "Biochemical analysis of human Dna2." Masuda-Sasa T., Imamura O., Campbell J.L. Nucleic Acids Res. 34:1865-1875(2006) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, CATALYTIC ACTIVITY, MUTAGENESIS OF ASP-277 AND LYS-654. |
| [6] | "Human DNA2 is a mitochondrial nuclease/helicase for efficient processing of DNA replication and repair intermediates." Zheng L., Zhou M., Guo Z., Lu H., Qian L., Dai H., Qiu J., Yakubovskaya E., Bogenhagen D.F., Demple B., Shen B. Mol. Cell 32:325-336(2008) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, SUBCELLULAR LOCATION. |
| [7] | "Human Dna2 is a nuclear and mitochondrial DNA maintenance protein." Duxin J.P., Dao B., Martinsson P., Rajala N., Guittat L., Campbell J.L., Spelbrink J.N., Stewart S.A. Mol. Cell. Biol. 29:4274-4282(2009) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, SUBCELLULAR LOCATION. |
| [8] | "Acetylation of Dna2 endonuclease/helicase and flap endonuclease 1 by p300 promotes DNA stability by creating long flap intermediates." Balakrishnan L., Stewart J., Polaczek P., Campbell J.L., Bambara R.A. J. Biol. Chem. 285:4398-4404(2010) [PubMed] [Europe PMC] [Abstract] Cited for: ACETYLATION. |
| [9] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [10] | "BLM-DNA2-RPA-MRN and EXO1-BLM-RPA-MRN constitute two DNA end resection machineries for human DNA break repair." Nimonkar A.V., Genschel J., Kinoshita E., Polaczek P., Campbell J.L., Wyman C., Modrich P., Kowalczykowski S.C. Genes Dev. 25:350-362(2011) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, INTERACTION WITH BLM, MUTAGENESIS OF ASP-277 AND LYS-654. |
| [11] | "Characterization of the endonuclease and ATP-dependent flap endo/exonuclease of Dna2." Fortini B.K., Pokharel S., Polaczek P., Balakrishnan L., Bambara R.A., Campbell J.L. J. Biol. Chem. 286:23763-23770(2011) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, DNA-BINDING, MUTAGENESIS OF LYS-654. |
| [12] | "Okazaki fragment processing-independent role for human Dna2 enzyme during DNA replication." Duxin J.P., Moore H.R., Sidorova J., Karanja K., Honaker Y., Dao B., Piwnica-Worms H., Campbell J.L., Monnat R.J. Jr., Stewart S.A. J. Biol. Chem. 287:21980-21991(2012) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, DNA-BINDING, INTERACTION WITH WDHD1, MUTAGENESIS OF ASP-277 AND LYS-654. |
| [13] | "Biochemical analyses indicate that binding and cleavage specificities define the ordered processing of human Okazaki fragments by Dna2 and FEN1." Gloor J.W., Balakrishnan L., Campbell J.L., Bambara R.A. Nucleic Acids Res. 40:6774-6786(2012) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, DNA-BINDING. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | D42046 mRNA. Translation: BAA07647.1. Different initiation. AL136233 Genomic DNA. Translation: CAI17238.1. Sequence problems. AL136233 Genomic DNA. Translation: CAI17237.1. Sequence problems. BC041115 mRNA. Translation: AAH41115.1. BC053574 mRNA. Translation: AAH53574.1. BC063664 mRNA. Translation: AAH63664.1. Different initiation. BC111740 mRNA. Translation: AAI11741.1. BC028188 mRNA. Translation: AAH28188.1. Different initiation. |
| IPI | IPI00216142. IPI00816670. IPI00816801. |
| PIR | T50697. |
| RefSeq | NP_001073918.2. NM_001080449.2. |
| UniGene | Hs.532446. |
3D structure databases | |
| ProteinModelPortal | P51530. |
| ModBase | Search... |
Protein-protein interaction databases | |
| STRING | 9606.ENSP00000382133. |
PTM databases | |
| PhosphoSite | P51530. |
Polymorphism databases | |
| DMDM | 119370373. |
Proteomic databases | |
| PaxDb | P51530. |
| PRIDE | P51530. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000358410; ENSP00000351185; ENSG00000138346. ENST00000399179; ENSP00000382132; ENSG00000138346. ENST00000549829; ENSP00000450033; ENSG00000138346. |
| GeneID | 1763. |
| KEGG | hsa:1763. |
| UCSC | uc021prt.1. human. |
Organism-specific databases | |
| CTD | 1763. |
| GeneCards | GC10M070173. |
| HGNC | HGNC:2939. DNA2. |
| HPA | HPA037487. |
| MIM | 601810. gene. |
| neXtProt | NX_P51530. |
| HUGE | Search... |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | COG1112. |
| HOGENOM | HOG000168456. |
| HOVERGEN | HBG081456. |
| InParanoid | P51530. |
| KO | K10742. |
Enzyme and pathway databases | |
| Reactome | REACT_115566. Cell Cycle. REACT_383. DNA Replication. |
Gene expression databases | |
| ArrayExpress | P51530. |
| Bgee | P51530. |
| CleanEx | HS_DNA2. |
| Genevestigator | P51530. |
| GermOnline | ENSG00000138346. Homo sapiens. |
Family and domain databases | |
| InterPro | IPR026851. Dna2. IPR014808. DNA_replication_fac_Dna2_N. [Graphical view] |
| PANTHER | PTHR10887:SF14. PTHR10887:SF14. 1 hit. |
| Pfam | PF08696. Dna2. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| GenomeRNAi | 1763. |
| NextBio | 7187. |
| SOURCE | Search... |
Entry information
| Entry name | DNA2_HUMAN | ||||||||
| Accession | Primary (citable) accession number: P51530 Secondary accession number(s): Q2NKM1 Q8N346 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 10 Human chromosome 10: entries, gene names and cross-references to MIM |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
