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Protein

60S ribosomal protein L39-1

Gene

RPL39A

more
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

  • RNA binding Source: GO_Central
  • structural constituent of ribosome Source: CAFA

GO - Biological processi

  • mature ribosome assembly Source: CAFA
  • translation Source: GO_Central

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-ATH-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-ATH-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-ATH-72689. Formation of a pool of free 40S subunits.
R-ATH-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-ATH-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-ATH-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L39-1
Gene namesi
Name:RPL39A
Ordered Locus Names:At2g25210
ORF Names:T22F11.20
AND
Name:RPL39C
Ordered Locus Names:At4g31985
ORF Names:F10N7.2, F11C18.17
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componentsi: Chromosome 2, Chromosome 4

Organism-specific databases

AraportiAT2G25210.
AT4G31985.
TAIRilocus:2059541. AT2G25210.
locus:505006541. AT4G31985.

Subcellular locationi

GO - Cellular componenti

  • cytosolic large ribosomal subunit Source: TAIR

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001270341 – 5160S ribosomal protein L39-1Add BLAST51

Proteomic databases

PaxDbiP51424.

Expressioni

Gene expression databases

ExpressionAtlasiP51424. baseline and differential.
GenevisibleiP51424. AT.

Interactioni

Protein-protein interaction databases

BioGridi14615. 3 interactors.
2411. 2 interactors.
IntActiP51424. 2 interactors.
STRINGi3702.AT4G31985.1.

Structurei

3D structure databases

ProteinModelPortaliP51424.
SMRiP51424.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG0002. Eukaryota.
COG2167. LUCA.
HOGENOMiHOG000230627.
InParanoidiP51424.
KOiK02924.
OMAiARQNRPI.
OrthoDBiEOG09361043.
PhylomeDBiP51424.

Family and domain databases

Gene3Di1.10.1620.10. 1 hit.
HAMAPiMF_00629. Ribosomal_L39e. 1 hit.
InterProiView protein in InterPro
IPR000077. Ribosomal_L39.
IPR020083. Ribosomal_L39_CS.
IPR023626. Ribosomal_L39e_dom.
PANTHERiPTHR19970. PTHR19970. 1 hit.
PfamiView protein in Pfam
PF00832. Ribosomal_L39. 1 hit.
SUPFAMiSSF48662. SSF48662. 1 hit.
PROSITEiView protein in PROSITE
PS00051. RIBOSOMAL_L39E. 1 hit.

Sequencei

Sequence statusi: Complete.

P51424-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPSHKSFMIK KKLGKKMRQN RPIPHWIRLR TDNTIRYNAK RRHWRRTKLG

F
Length:51
Mass (Da):6,416
Last modified:June 6, 2002 - v2
Checksum:iB427737EDAEE1C89
GO

Sequence cautioni

The sequence AAD23670 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence AEC07671 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC007070 Genomic DNA. Translation: AAD23670.1. Sequence problems.
AL021636 Genomic DNA. No translation available.
AL049607 Genomic DNA. No translation available.
CP002685 Genomic DNA. Translation: AEC07671.1. Different initiation.
CP002687 Genomic DNA. Translation: AEE85986.1.
AK118235 mRNA. Translation: BAC42854.1.
AF372908 mRNA. Translation: AAK49624.1.
AY057730 mRNA. Translation: AAL15360.1.
BT010475 mRNA. Translation: AAQ65098.1.
PIRiF84645.
RefSeqiNP_180093.1. NM_128078.2.
NP_567886.1. NM_119350.3.
UniGeneiAt.19137.
At.22311.
At.44753.
At.64384.

Genome annotation databases

EnsemblPlantsiAT4G31985.1; AT4G31985.1; AT4G31985.
GeneIDi817059.
829329.
GrameneiAT4G31985.1; AT4G31985.1; AT4G31985.
KEGGiath:AT2G25210.
ath:AT4G31985.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRL391_ARATH
AccessioniPrimary (citable) accession number: P51424
Secondary accession number(s): A0NAA9
, A2P2R6, Q541X1, Q93VI7, Q9SIS1
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: June 6, 2002
Last modified: June 7, 2017
This is version 122 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families