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Protein

60S ribosomal protein L39-1

Gene

RPL39A

more
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

  • RNA binding Source: GO_Central
  • structural constituent of ribosome Source: CAFA

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-ATH-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-ATH-1799339 SRP-dependent cotranslational protein targeting to membrane
R-ATH-72689 Formation of a pool of free 40S subunits
R-ATH-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-ATH-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-ATH-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L39-1
Gene namesi
Name:RPL39A
Ordered Locus Names:At2g25210
ORF Names:T22F11.20
AND
Name:RPL39C
Ordered Locus Names:At4g31985
ORF Names:F10N7.2, F11C18.17
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componentsi: Chromosome 2, Chromosome 4

Organism-specific databases

AraportiAT2G25210
AT4G31985
TAIRilocus:2059541 AT2G25210
locus:505006541 AT4G31985

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001270341 – 5160S ribosomal protein L39-1Add BLAST51

Proteomic databases

PaxDbiP51424

Expressioni

Gene expression databases

ExpressionAtlasiP51424 baseline and differential
GenevisibleiP51424 AT

Interactioni

Protein-protein interaction databases

BioGridi14615, 3 interactors
2411, 2 interactors
IntActiP51424, 2 interactors
STRINGi3702.AT4G31985.1

Structurei

3D structure databases

ProteinModelPortaliP51424
SMRiP51424
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG0002 Eukaryota
COG2167 LUCA
HOGENOMiHOG000230627
InParanoidiP51424
KOiK02924
OMAiARQNRPI
OrthoDBiEOG09361043
PhylomeDBiP51424

Family and domain databases

Gene3Di1.10.1620.10, 1 hit
HAMAPiMF_00629 Ribosomal_L39e, 1 hit
InterProiView protein in InterPro
IPR000077 Ribosomal_L39
IPR020083 Ribosomal_L39_CS
IPR023626 Ribosomal_L39e_dom_sf
PANTHERiPTHR19970 PTHR19970, 1 hit
PfamiView protein in Pfam
PF00832 Ribosomal_L39, 1 hit
SUPFAMiSSF48662 SSF48662, 1 hit
PROSITEiView protein in PROSITE
PS00051 RIBOSOMAL_L39E, 1 hit

Sequencei

Sequence statusi: Complete.

P51424-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPSHKSFMIK KKLGKKMRQN RPIPHWIRLR TDNTIRYNAK RRHWRRTKLG

F
Length:51
Mass (Da):6,416
Last modified:June 6, 2002 - v2
Checksum:iB427737EDAEE1C89
GO

Sequence cautioni

The sequence AAD23670 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence AEC07671 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC007070 Genomic DNA Translation: AAD23670.1 Sequence problems.
AL021636 Genomic DNA No translation available.
AL049607 Genomic DNA No translation available.
CP002685 Genomic DNA Translation: AEC07671.1 Different initiation.
CP002687 Genomic DNA Translation: AEE85986.1
AK118235 mRNA Translation: BAC42854.1
AF372908 mRNA Translation: AAK49624.1
AY057730 mRNA Translation: AAL15360.1
BT010475 mRNA Translation: AAQ65098.1
PIRiF84645
RefSeqiNP_180093.1, NM_128078.2
NP_567886.1, NM_119350.3
UniGeneiAt.19137
At.22311
At.44753
At.64384

Genome annotation databases

EnsemblPlantsiAT4G31985.1; AT4G31985.1; AT4G31985
GeneIDi817059
829329
GrameneiAT4G31985.1; AT4G31985.1; AT4G31985
KEGGiath:AT2G25210
ath:AT4G31985

Similar proteinsi

Entry informationi

Entry nameiRL391_ARATH
AccessioniPrimary (citable) accession number: P51424
Secondary accession number(s): A0NAA9
, A2P2R6, Q541X1, Q93VI7, Q9SIS1
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: June 6, 2002
Last modified: April 25, 2018
This is version 124 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health