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P51410 (RL9_MOUSE) Reviewed, UniProtKB/Swiss-Prot

Last modified May 29, 2013. Version 108. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
60S ribosomal protein L9
Gene names
Name:Rpl9
OrganismMus musculus (Mouse) [Reference proteome]
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus

Protein attributes

Sequence length192 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Belongs to the ribosomal protein L6P family.

Ontologies

Keywords
   Coding sequence diversityPolymorphism
   Molecular functionRibonucleoprotein
Ribosomal protein
Tumor antigen
   PTMAcetylation
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred by curator Ref.4. Source: MGI

   Cellular_componentcytosolic large ribosomal subunit

Inferred from direct assay Ref.4. Source: MGI

   Molecular_functionrRNA binding

Inferred from electronic annotation. Source: InterPro

structural constituent of ribosome

Inferred by curator Ref.4. Source: MGI

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 19219260S ribosomal protein L9
PRO_0000131099

Amino acid modifications

Modified residue1211N6-acetyllysine By similarity

Natural variations

Natural variant471L → H in UV-induced tumor 6132A antigen.

Sequences

Sequence LengthMass (Da)Tools
P51410 [UniParc].

Last modified July 11, 2002. Version 2.
Checksum: 94948BA07E86BBEB

FASTA19221,881
        10         20         30         40         50         60 
MKTILSNQTV DIPENVEITL KGRTVIVKGP RGTLRRDFNH INVELSLLGK KKKRLRVDKW 

        70         80         90        100        110        120 
WGNRKELATV RTICSHVQNM IKGVTLGFRY KMRSVYAHFP INVVIQENGS LVEIRNFLGE 

       130        140        150        160        170        180 
KYIRRVRMRT GVACSVSQAQ KDELILEGND IELVSNSAAL IQQATTVKNK DIRKFLDGIY 

       190 
VSEKGTVQQA DE

« Hide

References

« Hide 'large scale' references
[1]"Retinoblastoma(Rb) regulates 60S ribosomal protein L9."
Cheong C., Lee H.
Submitted (APR-2000) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [MRNA].
[2]"The transcriptional landscape of the mammalian genome."
Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J. expand/collapse author list , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: C57BL/6J.
Tissue: Embryo, Eye and Head.
[3]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: C57BL/6 and FVB/N.
Tissue: Brain, Colon and Mammary tumor.
[4]"A unique tumor antigen produced by a single amino acid substitution."
Monach P.A., Meredith S.C., Siegel C.T., Schreiber H.
Immunity 2:45-59(1995) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 14-185.
Strain: C3H/HeN.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AF260271 mRNA. Translation: AAF70508.1.
AK012331 mRNA. Translation: BAB28167.1.
AK012445 mRNA. Translation: BAB28244.1.
AK017388 mRNA. Translation: BAB30725.1.
AK017427 mRNA. Translation: BAB30739.1.
AK084278 mRNA. Translation: BAC39154.1.
BC013165 mRNA. Translation: AAH13165.1.
BC081435 mRNA. Translation: AAH81435.1.
BC083166 mRNA. Translation: AAH83166.1.
BC083329 mRNA. Translation: AAH83329.1.
U17332 mRNA. Translation: AAA85686.1.
U17331 mRNA. Translation: AAA85685.1.
IPIIPI00122413.
RefSeqNP_035422.1. NM_011292.2.
UniGeneMm.300271.
Mm.383918.
Mm.422908.

3D structure databases

ProteinModelPortalP51410.
SMRP51410. Positions 10-184.
ModBaseSearch...

Protein-protein interaction databases

MINTMINT-1857494.

PTM databases

PhosphoSiteP51410.

Proteomic databases

PaxDbP51410.
PRIDEP51410.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSMUST00000057885; ENSMUSP00000109399; ENSMUSG00000047215.
ENSMUST00000120094; ENSMUSP00000113704; ENSMUSG00000047215.
GeneID20005.
KEGGmmu:20005.
UCSCuc008xnp.2. mouse.

Organism-specific databases

CTD6133.
MGIMGI:1298373. Rpl9.

Phylogenomic databases

eggNOGCOG0097.
HOGENOMHOG000039905.
HOVERGENHBG000942.
InParanoidP51410.
KOK02940.
OMAAVRTVCS.
OrthoDBEOG4T4CWJ.

Gene expression databases

ArrayExpressP51410.
BgeeP51410.
CleanExMM_RPL9.
GenevestigatorP51410.
GermOnlineENSMUSG00000071269. Mus musculus.

Family and domain databases

Gene3D3.90.930.12. 2 hits.
InterProIPR000702. Ribosomal_L6.
IPR020040. Ribosomal_L6_a/b-dom.
IPR002359. Ribosomal_L6_CS2.
[Graphical view]
PANTHERPTHR11655. PTHR11655. 1 hit.
PfamPF00347. Ribosomal_L6. 2 hits.
[Graphical view]
PIRSFPIRSF002162. Ribosomal_L6. 1 hit.
SUPFAMSSF56053. Ribosomal_L6. 2 hits.
PROSITEPS00700. RIBOSOMAL_L6_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio297507.
SOURCESearch...

Entry information

Entry nameRL9_MOUSE
AccessionPrimary (citable) accession number: P51410
Secondary accession number(s): Q9JK58
Entry history
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: July 11, 2002
Last modified: May 29, 2013
This is version 108 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Relevant documents

Ribosomal proteins

Ribosomal proteins families and list of entries

MGD cross-references

Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot

SIMILARITY comments

Index of protein domains and families

to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents