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P51410

- RL9_MOUSE

UniProt

P51410 - RL9_MOUSE

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Protein
60S ribosomal protein L9
Gene
Rpl9
Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. rRNA binding Source: InterPro
  2. structural constituent of ribosome Source: MGI
Complete GO annotation...

GO - Biological processi

  1. translation Source: MGI
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein, Tumor antigen

Enzyme and pathway databases

ReactomeiREACT_196445. SRP-dependent cotranslational protein targeting to membrane.
REACT_198524. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_198528. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L9
Gene namesi
Name:Rpl9
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 5

Organism-specific databases

MGIiMGI:1298373. Rpl9.

Subcellular locationi

GO - Cellular componenti

  1. cytosolic large ribosomal subunit Source: MGI
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 19219260S ribosomal protein L9
PRO_0000131099Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei121 – 1211N6-acetyllysine1 Publication

Keywords - PTMi

Acetylation

Proteomic databases

MaxQBiP51410.
PaxDbiP51410.
PRIDEiP51410.

PTM databases

PhosphoSiteiP51410.

Expressioni

Gene expression databases

ArrayExpressiP51410.
BgeeiP51410.
CleanExiMM_RPL9.
GenevestigatoriP51410.

Interactioni

Protein-protein interaction databases

BioGridi202989. 3 interactions.
IntActiP51410. 3 interactions.
MINTiMINT-1857494.

Structurei

3D structure databases

ProteinModelPortaliP51410.
SMRiP51410. Positions 1-191.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0097.
HOGENOMiHOG000039905.
HOVERGENiHBG000942.
InParanoidiP51410.
KOiK02940.
OMAiISIEIHH.
OrthoDBiEOG7353Z4.
PhylomeDBiP51410.
TreeFamiTF300033.

Family and domain databases

Gene3Di3.90.930.12. 2 hits.
InterProiIPR000702. Ribosomal_L6.
IPR020040. Ribosomal_L6_a/b-dom.
IPR002359. Ribosomal_L6_CS2.
[Graphical view]
PANTHERiPTHR11655. PTHR11655. 1 hit.
PfamiPF00347. Ribosomal_L6. 2 hits.
[Graphical view]
PIRSFiPIRSF002162. Ribosomal_L6. 1 hit.
SUPFAMiSSF56053. SSF56053. 2 hits.
PROSITEiPS00700. RIBOSOMAL_L6_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P51410-1 [UniParc]FASTAAdd to Basket

« Hide

MKTILSNQTV DIPENVEITL KGRTVIVKGP RGTLRRDFNH INVELSLLGK    50
KKKRLRVDKW WGNRKELATV RTICSHVQNM IKGVTLGFRY KMRSVYAHFP 100
INVVIQENGS LVEIRNFLGE KYIRRVRMRT GVACSVSQAQ KDELILEGND 150
IELVSNSAAL IQQATTVKNK DIRKFLDGIY VSEKGTVQQA DE 192
Length:192
Mass (Da):21,881
Last modified:July 11, 2002 - v2
Checksum:i94948BA07E86BBEB
GO

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti47 – 471L → H in UV-induced tumor 6132A antigen.

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF260271 mRNA. Translation: AAF70508.1.
AK012331 mRNA. Translation: BAB28167.1.
AK012445 mRNA. Translation: BAB28244.1.
AK017388 mRNA. Translation: BAB30725.1.
AK017427 mRNA. Translation: BAB30739.1.
AK084278 mRNA. Translation: BAC39154.1.
BC013165 mRNA. Translation: AAH13165.1.
BC081435 mRNA. Translation: AAH81435.1.
BC083166 mRNA. Translation: AAH83166.1.
BC083329 mRNA. Translation: AAH83329.1.
U17332 mRNA. Translation: AAA85686.1.
U17331 mRNA. Translation: AAA85685.1.
CCDSiCCDS39097.1.
RefSeqiNP_035422.1. NM_011292.2.
UniGeneiMm.300271.
Mm.383918.
Mm.422908.

Genome annotation databases

EnsembliENSMUST00000057885; ENSMUSP00000109399; ENSMUSG00000047215.
ENSMUST00000120094; ENSMUSP00000113704; ENSMUSG00000047215.
GeneIDi20005.
KEGGimmu:20005.
UCSCiuc008xnp.2. mouse.

Keywords - Coding sequence diversityi

Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AF260271 mRNA. Translation: AAF70508.1 .
AK012331 mRNA. Translation: BAB28167.1 .
AK012445 mRNA. Translation: BAB28244.1 .
AK017388 mRNA. Translation: BAB30725.1 .
AK017427 mRNA. Translation: BAB30739.1 .
AK084278 mRNA. Translation: BAC39154.1 .
BC013165 mRNA. Translation: AAH13165.1 .
BC081435 mRNA. Translation: AAH81435.1 .
BC083166 mRNA. Translation: AAH83166.1 .
BC083329 mRNA. Translation: AAH83329.1 .
U17332 mRNA. Translation: AAA85686.1 .
U17331 mRNA. Translation: AAA85685.1 .
CCDSi CCDS39097.1.
RefSeqi NP_035422.1. NM_011292.2.
UniGenei Mm.300271.
Mm.383918.
Mm.422908.

3D structure databases

ProteinModelPortali P51410.
SMRi P51410. Positions 1-191.
ModBasei Search...

Protein-protein interaction databases

BioGridi 202989. 3 interactions.
IntActi P51410. 3 interactions.
MINTi MINT-1857494.

PTM databases

PhosphoSitei P51410.

Proteomic databases

MaxQBi P51410.
PaxDbi P51410.
PRIDEi P51410.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000057885 ; ENSMUSP00000109399 ; ENSMUSG00000047215 .
ENSMUST00000120094 ; ENSMUSP00000113704 ; ENSMUSG00000047215 .
GeneIDi 20005.
KEGGi mmu:20005.
UCSCi uc008xnp.2. mouse.

Organism-specific databases

CTDi 6133.
MGIi MGI:1298373. Rpl9.

Phylogenomic databases

eggNOGi COG0097.
HOGENOMi HOG000039905.
HOVERGENi HBG000942.
InParanoidi P51410.
KOi K02940.
OMAi ISIEIHH.
OrthoDBi EOG7353Z4.
PhylomeDBi P51410.
TreeFami TF300033.

Enzyme and pathway databases

Reactomei REACT_196445. SRP-dependent cotranslational protein targeting to membrane.
REACT_198524. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_198528. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

NextBioi 297507.
PROi P51410.
SOURCEi Search...

Gene expression databases

ArrayExpressi P51410.
Bgeei P51410.
CleanExi MM_RPL9.
Genevestigatori P51410.

Family and domain databases

Gene3Di 3.90.930.12. 2 hits.
InterProi IPR000702. Ribosomal_L6.
IPR020040. Ribosomal_L6_a/b-dom.
IPR002359. Ribosomal_L6_CS2.
[Graphical view ]
PANTHERi PTHR11655. PTHR11655. 1 hit.
Pfami PF00347. Ribosomal_L6. 2 hits.
[Graphical view ]
PIRSFi PIRSF002162. Ribosomal_L6. 1 hit.
SUPFAMi SSF56053. SSF56053. 2 hits.
PROSITEi PS00700. RIBOSOMAL_L6_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Retinoblastoma(Rb) regulates 60S ribosomal protein L9."
    Cheong C., Lee H.
    Submitted (APR-2000) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
  2. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J.
    Tissue: Embryo, Eye and Head.
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6 and FVB/N.
    Tissue: Brain, Colon and Mammary tumor.
  4. "A unique tumor antigen produced by a single amino acid substitution."
    Monach P.A., Meredith S.C., Siegel C.T., Schreiber H.
    Immunity 2:45-59(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 14-185.
    Strain: C3H/HeN.
  5. "SIRT5-mediated lysine desuccinylation impacts diverse metabolic pathways."
    Park J., Chen Y., Tishkoff D.X., Peng C., Tan M., Dai L., Xie Z., Zhang Y., Zwaans B.M., Skinner M.E., Lombard D.B., Zhao Y.
    Mol. Cell 50:919-930(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-121, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Embryonic fibroblast.

Entry informationi

Entry nameiRL9_MOUSE
AccessioniPrimary (citable) accession number: P51410
Secondary accession number(s): Q9JK58
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: July 11, 2002
Last modified: September 3, 2014
This is version 120 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi