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Protein

40S ribosomal protein S13

Gene

rps-13

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-6791226. Major pathway of rRNA processing in the nucleolus and cytosol.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-CEL-72702. Ribosomal scanning and start codon recognition.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S13
Gene namesi
Name:rps-13
ORF Names:C16A3.9
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome III

Organism-specific databases

WormBaseiC16A3.9; CE04009; WBGene00004482; rps-13.

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedBy similarity
ChainiPRO_00001156722 – 15140S ribosomal protein S13Add BLAST150

Proteomic databases

EPDiP51404.
PaxDbiP51404.
PeptideAtlasiP51404.
PRIDEiP51404.

Expressioni

Gene expression databases

BgeeiWBGene00004482.

Interactioni

Protein-protein interaction databases

BioGridi41119. 2 interactors.
DIPiDIP-25602N.
IntActiP51404. 1 interactor.
MINTiMINT-1063512.
STRINGi6239.C16A3.9.1.

Structurei

3D structure databases

ProteinModelPortaliP51404.
SMRiP51404.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG0400. Eukaryota.
COG0184. LUCA.
GeneTreeiENSGT00390000017491.
HOGENOMiHOG000180723.
InParanoidiP51404.
KOiK02953.
OMAiWHLVKKA.
OrthoDBiEOG091G0X8F.
PhylomeDBiP51404.

Family and domain databases

CDDicd00353. Ribosomal_S15p_S13e. 1 hit.
HAMAPiMF_01343_A. Ribosomal_S15_A. 1 hit.
InterProiView protein in InterPro
IPR012606. Ribosomal_S13/S15_N.
IPR000589. Ribosomal_S15.
IPR023029. Ribosomal_S15P.
IPR009068. S15_NS1_RNA-bd.
PANTHERiPTHR11885. PTHR11885. 1 hit.
PfamiView protein in Pfam
PF08069. Ribosomal_S13_N. 1 hit.
PF00312. Ribosomal_S15. 1 hit.
SMARTiView protein in SMART
SM01386. Ribosomal_S13_N. 1 hit.
SM01387. Ribosomal_S15. 1 hit.
SUPFAMiSSF47060. SSF47060. 1 hit.
PROSITEiView protein in PROSITE
PS00362. RIBOSOMAL_S15. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P51404-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGRMHNPGKG MAKSAIPYRR SVPSWQKMTA EEVQDQIVKM AKKGLRPSQI
60 70 80 90 100
GVILRDSHGV GQVRRLAGNK IFRILKSKGM APELPEDLYH LVKKAVAIRK
110 120 130 140 150
HLERSRKDID SKYRLILVES RIHRLARYYK TKRQLPPTWK YESGTAASLV

S
Length:151
Mass (Da):17,316
Last modified:January 23, 2007 - v2
Checksum:i22859158F5F91D07
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO080367 Genomic DNA. Translation: CCD63229.1.
PIRiH88480.
RefSeqiNP_498393.1. NM_065992.5.
UniGeneiCel.7376.

Genome annotation databases

EnsemblMetazoaiC16A3.9; C16A3.9; WBGene00004482.
GeneIDi175901.
KEGGicel:CELE_C16A3.9.
UCSCiC16A3.9.1. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO080367 Genomic DNA. Translation: CCD63229.1.
PIRiH88480.
RefSeqiNP_498393.1. NM_065992.5.
UniGeneiCel.7376.

3D structure databases

ProteinModelPortaliP51404.
SMRiP51404.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi41119. 2 interactors.
DIPiDIP-25602N.
IntActiP51404. 1 interactor.
MINTiMINT-1063512.
STRINGi6239.C16A3.9.1.

Proteomic databases

EPDiP51404.
PaxDbiP51404.
PeptideAtlasiP51404.
PRIDEiP51404.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiC16A3.9; C16A3.9; WBGene00004482.
GeneIDi175901.
KEGGicel:CELE_C16A3.9.
UCSCiC16A3.9.1. c. elegans.

Organism-specific databases

CTDi175901.
WormBaseiC16A3.9; CE04009; WBGene00004482; rps-13.

Phylogenomic databases

eggNOGiKOG0400. Eukaryota.
COG0184. LUCA.
GeneTreeiENSGT00390000017491.
HOGENOMiHOG000180723.
InParanoidiP51404.
KOiK02953.
OMAiWHLVKKA.
OrthoDBiEOG091G0X8F.
PhylomeDBiP51404.

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-6791226. Major pathway of rRNA processing in the nucleolus and cytosol.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-CEL-72702. Ribosomal scanning and start codon recognition.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

PROiPR:P51404.

Gene expression databases

BgeeiWBGene00004482.

Family and domain databases

CDDicd00353. Ribosomal_S15p_S13e. 1 hit.
HAMAPiMF_01343_A. Ribosomal_S15_A. 1 hit.
InterProiView protein in InterPro
IPR012606. Ribosomal_S13/S15_N.
IPR000589. Ribosomal_S15.
IPR023029. Ribosomal_S15P.
IPR009068. S15_NS1_RNA-bd.
PANTHERiPTHR11885. PTHR11885. 1 hit.
PfamiView protein in Pfam
PF08069. Ribosomal_S13_N. 1 hit.
PF00312. Ribosomal_S15. 1 hit.
SMARTiView protein in SMART
SM01386. Ribosomal_S13_N. 1 hit.
SM01387. Ribosomal_S15. 1 hit.
SUPFAMiSSF47060. SSF47060. 1 hit.
PROSITEiView protein in PROSITE
PS00362. RIBOSOMAL_S15. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRS13_CAEEL
AccessioniPrimary (citable) accession number: P51404
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: January 23, 2007
Last modified: May 10, 2017
This is version 115 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.