Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

P51342

- YCF28_PORPU

UniProt

P51342 - YCF28_PORPU

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein

Putative HTH-type transcriptional regulator ycf28

Gene

ycf28

Organism
Porphyra purpurea (Red seaweed)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi188 – 20720H-T-H motifPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW
  2. sequence-specific DNA binding transcription factor activity Source: InterPro

GO - Biological processi

  1. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Putative HTH-type transcriptional regulator ycf28
Gene namesi
Name:ycf28
Encoded oniPlastid; Chloroplast
OrganismiPorphyra purpurea (Red seaweed)
Taxonomic identifieri2787 [NCBI]
Taxonomic lineageiEukaryotaRhodophytaBangiophyceaeBangialesBangiaceaePorphyra

Subcellular locationi

GO - Cellular componenti

  1. chloroplast Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Chloroplast, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 237237Putative HTH-type transcriptional regulator ycf28PRO_0000100190Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliP51342.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini155 – 22874HTH crp-typePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH crp-type DNA-binding domain.PROSITE-ProRule annotation

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
2.60.120.10. 1 hit.
InterProiIPR018490. cNMP-bd-like.
IPR000595. cNMP-bd_dom.
IPR012318. HTH_CRP_2.
IPR014710. RmlC-like_jellyroll.
IPR001808. Tscrpt_reg_HTH_Crp.
IPR018335. Tscrpt_reg_HTH_Crp-type_CS.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00027. cNMP_binding. 1 hit.
[Graphical view]
SMARTiSM00100. cNMP. 1 hit.
SM00419. HTH_CRP. 1 hit.
[Graphical view]
SUPFAMiSSF51206. SSF51206. 1 hit.
PROSITEiPS00042. HTH_CRP_1. 1 hit.
PS51063. HTH_CRP_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P51342 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MNNHYLNQGC SFEKVSKNIL KKNSHCNPWL SFFNQQDSEH QIFSLKQNDI
60 70 80 90 100
IIFDVNSKLY IILAGCLIVK KVFRNRKKII LNVLTSEDSF GHTQFASNRF
110 120 130 140 150
YYEVEALDVA QVLSIEYSII MNICQNYPNF SVFLVNHLLL CSIKANHFME
160 170 180 190 200
IISHKSITNR LISLLLLLSE HNGISQNNGI LIDLTITHKV LAQIIGSNRV
210 220 230
SITRIISKLI HTKFISMQKK KVIIHDPILL SQRFSNR
Length:237
Mass (Da):27,373
Last modified:October 1, 1996 - v1
Checksum:iCD8AAF7C1DD4F333
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U38804 Genomic DNA. Translation: AAC08228.1.
PIRiS73263.
RefSeqiNP_053952.1. NC_000925.1.

Genome annotation databases

GeneIDi809978.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U38804 Genomic DNA. Translation: AAC08228.1 .
PIRi S73263.
RefSeqi NP_053952.1. NC_000925.1.

3D structure databases

ProteinModelPortali P51342.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 809978.

Family and domain databases

Gene3Di 1.10.10.10. 1 hit.
2.60.120.10. 1 hit.
InterProi IPR018490. cNMP-bd-like.
IPR000595. cNMP-bd_dom.
IPR012318. HTH_CRP_2.
IPR014710. RmlC-like_jellyroll.
IPR001808. Tscrpt_reg_HTH_Crp.
IPR018335. Tscrpt_reg_HTH_Crp-type_CS.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view ]
Pfami PF00027. cNMP_binding. 1 hit.
[Graphical view ]
SMARTi SM00100. cNMP. 1 hit.
SM00419. HTH_CRP. 1 hit.
[Graphical view ]
SUPFAMi SSF51206. SSF51206. 1 hit.
PROSITEi PS00042. HTH_CRP_1. 1 hit.
PS51063. HTH_CRP_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete nucleotide sequence of the Porphyra purpurea chloroplast genome."
    Reith M.E., Munholland J.
    Plant Mol. Biol. Rep. 13:333-335(1995)
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Avonport.

Entry informationi

Entry nameiYCF28_PORPU
AccessioniPrimary (citable) accession number: P51342
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: October 1, 1996
Last modified: October 29, 2014
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)

Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3