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P51342 (YCF28_PORPU) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 70. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Putative HTH-type transcriptional regulator ycf28
Gene names
Name:ycf28
Encoded onPlastid; Chloroplast
OrganismPorphyra purpurea (Red seaweed)
Taxonomic identifier2787 [NCBI]
Taxonomic lineageEukaryotaRhodophytaBangiophyceaeBangialesBangiaceaePorphyra

Protein attributes

Sequence length237 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Subcellular location

Plastidchloroplast.

Sequence similarities

Contains 1 cyclic nucleotide-binding domain.

Contains 1 HTH crp-type DNA-binding domain.

Ontologies

Keywords
   Biological processTranscription
Transcription regulation
   Cellular componentChloroplast
Plastid
   LigandDNA-binding
Gene Ontology (GO)
   Biological_processtranscription, DNA-templated

Inferred from electronic annotation. Source: UniProtKB-KW

   Cellular_componentchloroplast

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionDNA binding

Inferred from electronic annotation. Source: UniProtKB-KW

sequence-specific DNA binding transcription factor activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 237237Putative HTH-type transcriptional regulator ycf28
PRO_0000100190

Regions

Domain155 – 22874HTH crp-type
DNA binding188 – 20720H-T-H motif By similarity

Sequences

Sequence LengthMass (Da)Tools
P51342 [UniParc].

Last modified October 1, 1996. Version 1.
Checksum: CD8AAF7C1DD4F333

FASTA23727,373
        10         20         30         40         50         60 
MNNHYLNQGC SFEKVSKNIL KKNSHCNPWL SFFNQQDSEH QIFSLKQNDI IIFDVNSKLY 

        70         80         90        100        110        120 
IILAGCLIVK KVFRNRKKII LNVLTSEDSF GHTQFASNRF YYEVEALDVA QVLSIEYSII 

       130        140        150        160        170        180 
MNICQNYPNF SVFLVNHLLL CSIKANHFME IISHKSITNR LISLLLLLSE HNGISQNNGI 

       190        200        210        220        230 
LIDLTITHKV LAQIIGSNRV SITRIISKLI HTKFISMQKK KVIIHDPILL SQRFSNR 

« Hide

References

[1]"Complete nucleotide sequence of the Porphyra purpurea chloroplast genome."
Reith M.E., Munholland J.
Plant Mol. Biol. Rep. 13:333-335(1995)
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Avonport.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
U38804 Genomic DNA. Translation: AAC08228.1.
PIRS73263.
RefSeqNP_053952.1. NC_000925.1.

3D structure databases

ProteinModelPortalP51342.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID809978.

Phylogenomic databases

ProtClustDBCLSC2491350.

Family and domain databases

Gene3D1.10.10.10. 1 hit.
2.60.120.10. 1 hit.
InterProIPR018490. cNMP-bd-like.
IPR000595. cNMP-bd_dom.
IPR012318. HTH_CRP_2.
IPR014710. RmlC-like_jellyroll.
IPR001808. Tscrpt_reg_HTH_Crp.
IPR018335. Tscrpt_reg_HTH_Crp-type_CS.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamPF00027. cNMP_binding. 1 hit.
[Graphical view]
SMARTSM00100. cNMP. 1 hit.
SM00419. HTH_CRP. 1 hit.
[Graphical view]
SUPFAMSSF51206. SSF51206. 1 hit.
PROSITEPS00042. HTH_CRP_1. 1 hit.
PS51063. HTH_CRP_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameYCF28_PORPU
AccessionPrimary (citable) accession number: P51342
Entry history
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: October 1, 1996
Last modified: February 19, 2014
This is version 70 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)

Relevant documents

SIMILARITY comments

Index of protein domains and families