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P51342

- YCF28_PORPU

UniProt

P51342 - YCF28_PORPU

Protein

Putative HTH-type transcriptional regulator ycf28

Gene

ycf28

Organism
Porphyra purpurea (Red seaweed)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 72 (01 Oct 2014)
      Sequence version 1 (01 Oct 1996)
      Previous versions | rss
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    Functioni

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    DNA bindingi188 – 20720H-T-H motifPROSITE-ProRule annotationAdd
    BLAST

    GO - Molecular functioni

    1. DNA binding Source: UniProtKB-KW
    2. sequence-specific DNA binding transcription factor activity Source: InterPro

    GO - Biological processi

    1. transcription, DNA-templated Source: UniProtKB-KW

    Keywords - Biological processi

    Transcription, Transcription regulation

    Keywords - Ligandi

    DNA-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Putative HTH-type transcriptional regulator ycf28
    Gene namesi
    Name:ycf28
    Encoded oniPlastid; Chloroplast
    OrganismiPorphyra purpurea (Red seaweed)
    Taxonomic identifieri2787 [NCBI]
    Taxonomic lineageiEukaryotaRhodophytaBangiophyceaeBangialesBangiaceaePorphyra

    Subcellular locationi

    GO - Cellular componenti

    1. chloroplast Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Chloroplast, Plastid

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 237237Putative HTH-type transcriptional regulator ycf28PRO_0000100190Add
    BLAST

    Structurei

    3D structure databases

    ProteinModelPortaliP51342.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini155 – 22874HTH crp-typePROSITE-ProRule annotationAdd
    BLAST

    Sequence similaritiesi

    Contains 1 HTH crp-type DNA-binding domain.PROSITE-ProRule annotation

    Family and domain databases

    Gene3Di1.10.10.10. 1 hit.
    2.60.120.10. 1 hit.
    InterProiIPR018490. cNMP-bd-like.
    IPR000595. cNMP-bd_dom.
    IPR012318. HTH_CRP_2.
    IPR014710. RmlC-like_jellyroll.
    IPR001808. Tscrpt_reg_HTH_Crp.
    IPR018335. Tscrpt_reg_HTH_Crp-type_CS.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view]
    PfamiPF00027. cNMP_binding. 1 hit.
    [Graphical view]
    SMARTiSM00100. cNMP. 1 hit.
    SM00419. HTH_CRP. 1 hit.
    [Graphical view]
    SUPFAMiSSF51206. SSF51206. 1 hit.
    PROSITEiPS00042. HTH_CRP_1. 1 hit.
    PS51063. HTH_CRP_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P51342-1 [UniParc]FASTAAdd to Basket

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    MNNHYLNQGC SFEKVSKNIL KKNSHCNPWL SFFNQQDSEH QIFSLKQNDI    50
    IIFDVNSKLY IILAGCLIVK KVFRNRKKII LNVLTSEDSF GHTQFASNRF 100
    YYEVEALDVA QVLSIEYSII MNICQNYPNF SVFLVNHLLL CSIKANHFME 150
    IISHKSITNR LISLLLLLSE HNGISQNNGI LIDLTITHKV LAQIIGSNRV 200
    SITRIISKLI HTKFISMQKK KVIIHDPILL SQRFSNR 237
    Length:237
    Mass (Da):27,373
    Last modified:October 1, 1996 - v1
    Checksum:iCD8AAF7C1DD4F333
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U38804 Genomic DNA. Translation: AAC08228.1.
    PIRiS73263.
    RefSeqiNP_053952.1. NC_000925.1.

    Genome annotation databases

    GeneIDi809978.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U38804 Genomic DNA. Translation: AAC08228.1 .
    PIRi S73263.
    RefSeqi NP_053952.1. NC_000925.1.

    3D structure databases

    ProteinModelPortali P51342.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 809978.

    Family and domain databases

    Gene3Di 1.10.10.10. 1 hit.
    2.60.120.10. 1 hit.
    InterProi IPR018490. cNMP-bd-like.
    IPR000595. cNMP-bd_dom.
    IPR012318. HTH_CRP_2.
    IPR014710. RmlC-like_jellyroll.
    IPR001808. Tscrpt_reg_HTH_Crp.
    IPR018335. Tscrpt_reg_HTH_Crp-type_CS.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view ]
    Pfami PF00027. cNMP_binding. 1 hit.
    [Graphical view ]
    SMARTi SM00100. cNMP. 1 hit.
    SM00419. HTH_CRP. 1 hit.
    [Graphical view ]
    SUPFAMi SSF51206. SSF51206. 1 hit.
    PROSITEi PS00042. HTH_CRP_1. 1 hit.
    PS51063. HTH_CRP_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete nucleotide sequence of the Porphyra purpurea chloroplast genome."
      Reith M.E., Munholland J.
      Plant Mol. Biol. Rep. 13:333-335(1995)
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Avonport.

    Entry informationi

    Entry nameiYCF28_PORPU
    AccessioniPrimary (citable) accession number: P51342
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: October 1, 1996
    Last sequence update: October 1, 1996
    Last modified: October 1, 2014
    This is version 72 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)

    Miscellaneousi

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3