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Protein

60S ribosomal protein L9

Gene

RpL9

Organism
Drosophila melanogaster (Fruit fly)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • RNA binding Source: GO_Central
  • rRNA binding Source: InterPro
  • structural constituent of ribosome Source: FlyBase

GO - Biological processi

  • centrosome duplication Source: FlyBase
  • cytoplasmic translation Source: GO_Central
  • mitotic spindle elongation Source: FlyBase
  • mitotic spindle organization Source: FlyBase
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-DME-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-DME-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-DME-72689. Formation of a pool of free 40S subunits.
R-DME-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-DME-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-DME-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L9
Gene namesi
Name:RpL9
Synonyms:M(2)32D
ORF Names:CG6141
OrganismiDrosophila melanogaster (Fruit fly)
Taxonomic identifieri7227 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaArthropodaHexapodaInsectaPterygotaNeopteraEndopterygotaDipteraBrachyceraMuscomorphaEphydroideaDrosophilidaeDrosophilaSophophora
Proteomesi
  • UP000000803 Componenti: Chromosome 2L

Organism-specific databases

FlyBaseiFBgn0015756. RpL9.

Subcellular locationi

GO - Cellular componenti

  • cytosolic large ribosomal subunit Source: GO_Central
  • ribosome Source: FlyBase
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 19019060S ribosomal protein L9PRO_0000131102Add
BLAST

Proteomic databases

PaxDbiP50882.
PRIDEiP50882.

Expressioni

Gene expression databases

BgeeiFBgn0015756.
ExpressionAtlasiP50882. differential.
GenevisibleiP50882. DM.

Interactioni

Protein-protein interaction databases

BioGridi60590. 12 interactions.
DIPiDIP-20042N.
IntActiP50882. 14 interactions.
MINTiMINT-319853.
STRINGi7227.FBpp0079752.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V6Welectron microscopy6.00CH1-190[»]
ProteinModelPortaliP50882.
SMRiP50882. Positions 1-182.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L6P family.Curated

Phylogenomic databases

eggNOGiKOG3255. Eukaryota.
COG0097. LUCA.
InParanoidiP50882.
KOiK02940.
OMAiLRVRKWF.
OrthoDBiEOG091G0R6Z.
PhylomeDBiP50882.

Family and domain databases

Gene3Di3.90.930.12. 2 hits.
InterProiIPR000702. Ribosomal_L6.
IPR020040. Ribosomal_L6_a/b-dom.
IPR002359. Ribosomal_L6_CS2.
[Graphical view]
PANTHERiPTHR11655. PTHR11655. 1 hit.
PfamiPF00347. Ribosomal_L6. 2 hits.
[Graphical view]
PIRSFiPIRSF002162. Ribosomal_L6. 1 hit.
SUPFAMiSSF56053. SSF56053. 2 hits.
PROSITEiPS00700. RIBOSOMAL_L6_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P50882-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRTINSNQCV KIPKDIKASV KARVVTITGT RGTLKRSFKH LALDMYMPDK
60 70 80 90 100
RTLKVEKWFG TKKELAAVRT VCSHIENMIK GVTFGFQYKM RAVYAHFPIN
110 120 130 140 150
CVTSENNTVI EIRNFLGEKY IRRVEMAPGV TVVNSTAQKD ELIVEGNDIE
160 170 180 190
SVSGSAALIQ QSTTVKNKDI RKFLDGLYVS EKTTVVKLES
Length:190
Mass (Da):21,392
Last modified:June 1, 2001 - v2
Checksum:i689B2520ACDA12D3
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti37 – 371S → T in CAA64319 (PubMed:8676882).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X94613 Genomic DNA. Translation: CAA64319.1.
AE014134 Genomic DNA. Translation: AAF53048.2.
AE014134 Genomic DNA. Translation: AAF53049.1.
BT022718 mRNA. Translation: AAY55134.1.
PIRiJC6062.
RefSeqiNP_001285826.1. NM_001298897.1.
NP_477161.1. NM_057813.4.
NP_723644.1. NM_164955.2.
UniGeneiDm.403.

Genome annotation databases

EnsemblMetazoaiFBtr0080163; FBpp0079752; FBgn0015756.
FBtr0080164; FBpp0079753; FBgn0015756.
FBtr0340226; FBpp0309201; FBgn0015756.
GeneIDi34526.
KEGGidme:Dmel_CG6141.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X94613 Genomic DNA. Translation: CAA64319.1.
AE014134 Genomic DNA. Translation: AAF53048.2.
AE014134 Genomic DNA. Translation: AAF53049.1.
BT022718 mRNA. Translation: AAY55134.1.
PIRiJC6062.
RefSeqiNP_001285826.1. NM_001298897.1.
NP_477161.1. NM_057813.4.
NP_723644.1. NM_164955.2.
UniGeneiDm.403.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4V6Welectron microscopy6.00CH1-190[»]
ProteinModelPortaliP50882.
SMRiP50882. Positions 1-182.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi60590. 12 interactions.
DIPiDIP-20042N.
IntActiP50882. 14 interactions.
MINTiMINT-319853.
STRINGi7227.FBpp0079752.

Proteomic databases

PaxDbiP50882.
PRIDEiP50882.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiFBtr0080163; FBpp0079752; FBgn0015756.
FBtr0080164; FBpp0079753; FBgn0015756.
FBtr0340226; FBpp0309201; FBgn0015756.
GeneIDi34526.
KEGGidme:Dmel_CG6141.

Organism-specific databases

CTDi6133.
FlyBaseiFBgn0015756. RpL9.

Phylogenomic databases

eggNOGiKOG3255. Eukaryota.
COG0097. LUCA.
InParanoidiP50882.
KOiK02940.
OMAiLRVRKWF.
OrthoDBiEOG091G0R6Z.
PhylomeDBiP50882.

Enzyme and pathway databases

ReactomeiR-DME-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-DME-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-DME-72689. Formation of a pool of free 40S subunits.
R-DME-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-DME-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-DME-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

ChiTaRSiRpL9. fly.
GenomeRNAii34526.
PROiP50882.

Gene expression databases

BgeeiFBgn0015756.
ExpressionAtlasiP50882. differential.
GenevisibleiP50882. DM.

Family and domain databases

Gene3Di3.90.930.12. 2 hits.
InterProiIPR000702. Ribosomal_L6.
IPR020040. Ribosomal_L6_a/b-dom.
IPR002359. Ribosomal_L6_CS2.
[Graphical view]
PANTHERiPTHR11655. PTHR11655. 1 hit.
PfamiPF00347. Ribosomal_L6. 2 hits.
[Graphical view]
PIRSFiPIRSF002162. Ribosomal_L6. 1 hit.
SUPFAMiSSF56053. SSF56053. 2 hits.
PROSITEiPS00700. RIBOSOMAL_L6_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL9_DROME
AccessioniPrimary (citable) accession number: P50882
Secondary accession number(s): A4V0M0
, Q4V5D8, Q9VKL6, Q9VKL7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: June 1, 2001
Last modified: September 7, 2016
This is version 129 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programDrosophila annotation project

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Drosophila
    Drosophila: entries, gene names and cross-references to FlyBase
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. Ribosomal proteins
    Ribosomal proteins families and list of entries
  4. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.