P50880 (RL3_CAEEL) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
60S ribosomal protein L3

Gene names

Name:	rpl-3
ORF Names:	F13B10.2

Organism

Caenorhabditis elegans [Reference proteome]

Taxonomic identifier

6239 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Protostomia › Ecdysozoa › Nematoda › Chromadorea › Rhabditida › Rhabditoidea › Rhabditidae › Peloderinae › Caenorhabditis

Protein attributes

Sequence length	401 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Function	The L3 protein is a component of the large subunit of cytoplasmic ribosomes By similarity.
Subcellular location	Cytoplasm.
Sequence similarities	Belongs to the ribosomal protein L3P family.

Ontologies

Keywords
Cellular component	Cytoplasm
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: InterPro
Cellular_component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 401	401	60S ribosomal protein L3		PRO_0000077235

Sequences

	Sequence		Length	Mass (Da)
	P50880 [UniParc]. Last modified October 1, 1996. Version 1. Checksum: 25F3DAE3714B0DFD	FASTA	401	45,659
	10 20 30 40 50 60 MSHRKFSAPR HGHMGFTPKK RSRTYRGRIK AFPKDDKSKP IHLTAFLGYK AGMTHIVRDV 70 80 90 100 110 120 DKPGSKVNKK EVVEAVTIVE TPPMVIAGVT GYVDTPQGPR ALTTIWAEHL SEEARRRFYS 130 140 150 160 170 180 NWAKSKKKAF TKYAKKWQDE DGKKLIEADF AKLKKYCSSI RVIAHTQMKI LRRRQKKAHL 190 200 210 220 230 240 VEIQVNGGTI EQKVDWAREH LEKQVQVDTV FAQDEMIDTI GVTRGHGFKG VTSRWHTKKL 250 260 270 280 290 300 PRKTHKGLRK VACIGAWHPS RVAFTVARAG QKGFHHRTII NNKIYRIGKS ALTEEGKNNG 310 320 330 340 350 360 STEFDLTQKT ITPMGGFPRY GIVNQDYIML RGAVLGPKKR LITLRKSLIT QTKRVAHEKI 370 380 390 400 NLKWIDTSSK TGHGRFQTTA EKRAFMGKLK RDFLAEAEAK A

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Nucleotide sequence of ribosomal protein L3 cDNA and the exon-intron structure of L3 gene in the nematode, Caenorhabditis elegans." Zhu X., Joh K., Hori K. DNA Seq. 6:299-302(1996) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA]. Strain: Bristol N2.
[2]	"Genome sequence of the nematode C. elegans: a platform for investigating biology." The C. elegans sequencing consortium Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Bristol N2.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	Z69337 Genomic DNA. Translation: CAA93269.1. Z69336 mRNA. Translation: CAA93268.1. Z49936, Z66495 Genomic DNA. Translation: CAA90183.1.
PIR	T19771.
RefSeq	NP_001021254.1. NM_001026083.4.
UniGene	Cel.17929.
3D structure databases
ProteinModelPortal	P50880.
SMR	P50880. Positions 2-393.
ModBase	Search...
Protein-protein interaction databases
DIP	DIP-24912N.
IntAct	P50880. 1 interaction.
MINT	MINT-1054211.
STRING	6239.F13B10.2a.2.
Proteomic databases
PaxDb	P50880.
PRIDE	P50880.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblMetazoa	F13B10.2a.1; F13B10.2a.1; F13B10.2. F13B10.2a.2; F13B10.2a.2; F13B10.2. F13B10.2a.3; F13B10.2a.3; F13B10.2.
GeneID	175501.
KEGG	cel:CELE_F13B10.2.
UCSC	F13B10.2d.2. c. elegans.
Organism-specific databases
CTD	175501.
WormBase	F13B10.2a; CE05598; WBGene00004414; rpl-3.
Phylogenomic databases
eggNOG	COG0087.
GeneTree	ENSGT00390000017606.
HOGENOM	HOG000107319.
InParanoid	P50880.
KO	K02925.
OMA	GFHQRTE.
Gene expression databases
ArrayExpress	P50880.
Family and domain databases
InterPro	IPR000597. Ribosomal_L3. IPR019926. Ribosomal_L3_CS. IPR009000. Transl_elong_init/rib_B-barrel. [Graphical view]
Pfam	PF00297. Ribosomal_L3. 1 hit. [Graphical view]
SUPFAM	SSF50447. Translat_factor. 1 hit.
PROSITE	PS00474. RIBOSOMAL_L3. 1 hit. [Graphical view]
ProtoNet	Search...
Other
NextBio	888420.

Entry information

Entry name

RL3_CAEEL

Accession

Primary (citable) accession number: P50880

Entry history

Integrated into UniProtKB/Swiss-Prot:	October 1, 1996
Last sequence update:	October 1, 1996
Last modified:	May 1, 2013
This is version 91 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Caenorhabditis annotation project