Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

60S ribosomal protein L3

Gene

rpl-3

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

The L3 protein is a component of the large subunit of cytoplasmic ribosomes.By similarity

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L3
Gene namesi
Name:rpl-3
ORF Names:F13B10.2
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome III

Organism-specific databases

WormBaseiF13B10.2a; CE05598; WBGene00004414; rpl-3.

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000772351 – 40160S ribosomal protein L3Add BLAST401

Proteomic databases

EPDiP50880.
PaxDbiP50880.
PeptideAtlasiP50880.
PRIDEiP50880.

Expressioni

Gene expression databases

BgeeiWBGene00004414.
ExpressionAtlasiP50880. baseline.

Interactioni

Protein-protein interaction databases

BioGridi40739. 13 interactors.
DIPiDIP-24912N.
IntActiP50880. 1 interactor.
MINTiMINT-1054211.
STRINGi6239.F13B10.2a.1.

Structurei

3D structure databases

ProteinModelPortaliP50880.
SMRiP50880.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG0746. Eukaryota.
COG0087. LUCA.
GeneTreeiENSGT00390000017606.
HOGENOMiHOG000107319.
InParanoidiP50880.
KOiK02925.
OMAiHQRTEYN.
OrthoDBiEOG091G086T.
PhylomeDBiP50880.

Family and domain databases

InterProiView protein in InterPro
IPR000597. Ribosomal_L3.
IPR019926. Ribosomal_L3_CS.
IPR009000. Transl_B-barrel.
PfamiView protein in Pfam
PF00297. Ribosomal_L3. 1 hit.
SUPFAMiSSF50447. SSF50447. 1 hit.
PROSITEiView protein in PROSITE
PS00474. RIBOSOMAL_L3. 1 hit.

Sequencei

Sequence statusi: Complete.

P50880-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSHRKFSAPR HGHMGFTPKK RSRTYRGRIK AFPKDDKSKP IHLTAFLGYK
60 70 80 90 100
AGMTHIVRDV DKPGSKVNKK EVVEAVTIVE TPPMVIAGVT GYVDTPQGPR
110 120 130 140 150
ALTTIWAEHL SEEARRRFYS NWAKSKKKAF TKYAKKWQDE DGKKLIEADF
160 170 180 190 200
AKLKKYCSSI RVIAHTQMKI LRRRQKKAHL VEIQVNGGTI EQKVDWAREH
210 220 230 240 250
LEKQVQVDTV FAQDEMIDTI GVTRGHGFKG VTSRWHTKKL PRKTHKGLRK
260 270 280 290 300
VACIGAWHPS RVAFTVARAG QKGFHHRTII NNKIYRIGKS ALTEEGKNNG
310 320 330 340 350
STEFDLTQKT ITPMGGFPRY GIVNQDYIML RGAVLGPKKR LITLRKSLIT
360 370 380 390 400
QTKRVAHEKI NLKWIDTSSK TGHGRFQTTA EKRAFMGKLK RDFLAEAEAK

A
Length:401
Mass (Da):45,659
Last modified:October 1, 1996 - v1
Checksum:i25F3DAE3714B0DFD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z69337 Genomic DNA. Translation: CAA93269.1.
Z69336 mRNA. Translation: CAA93268.1.
Z49936, Z66495 Genomic DNA. Translation: CAA90183.1.
PIRiT19771.
RefSeqiNP_001021254.1. NM_001026083.4.
UniGeneiCel.17929.

Genome annotation databases

EnsemblMetazoaiF13B10.2a.1; F13B10.2a.1; WBGene00004414.
F13B10.2a.2; F13B10.2a.2; WBGene00004414.
GeneIDi175501.
KEGGicel:CELE_F13B10.2.
UCSCiF13B10.2d.2. c. elegans.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRL3_CAEEL
AccessioniPrimary (citable) accession number: P50880
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: October 1, 1996
Last modified: July 5, 2017
This is version 125 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families