P50747 (BPL1_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 126.
History...
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Biotin--protein ligase EC=6.3.4.- Alternative name(s): Biotin apo-protein ligase Including the following 4 domains:
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| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||
| Taxonomic identifier | 9606 [NCBI] | ||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 726 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Post-translational modification of specific protein by attachment of biotin. Acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase. |
| Catalytic activity | ATP + biotin + apo-[methylmalonyl-CoA:pyruvate carboxytransferase] = AMP + diphosphate + [methylmalonyl-CoA:pyruvate carboxytransferase]. ATP + biotin + apo-[propionyl-CoA:carbon-dioxide ligase (ADP-forming)] = AMP + diphosphate + [propionyl-CoA:carbon-dioxide ligase (ADP-forming)]. ATP + biotin + apo-[3-methylcrotonoyl-CoA:carbon-dioxide ligase (ADP-forming)] = AMP + diphosphate + [3-methylcrotonoyl-CoA:carbon-dioxide ligase (ADP-forming)]. ATP + biotin + apo-[acetyl-CoA:carbon-dioxide ligase (ADP-forming)] = AMP + diphosphate + [acetyl-CoA:carbon-dioxide ligase (ADP-forming)]. |
| Subunit structure | Monomer. |
| Subcellular location | |
| Tissue specificity | Mostly expressed in muscle, placenta, in lesser extent in the brain, kidney, pancreas, liver and lung. |
| Involvement in disease | Holocarboxylase synthetase deficiency (HLCS deficiency) [MIM:253270]: A neonatal form of multiple carboxylase deficiency, an autosomal recessive disorder of biotin metabolism, characterized by ketoacidosis, hyperammonemia, excretion of abnormal organic acid metabolites, and dermatitis. In holocarboxylase synthetase deficiency, clinical and biochemical symptoms improve dramatically with administration of biotin. |
| Sequence similarities | Belongs to the biotin--protein ligase family. |
| Biophysicochemical properties | Kinetic parameters: KM=224 nM for biotin Ref.15 Vmax=143.9 pmol/min/mg enzyme |
Ontologies
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 726 | 726 | Biotin--protein ligase | PRO_0000064979 | |||||
Amino acid modifications | |||||||||
| Modified residue | 147 | 1 | Phosphoserine Ref.9 | ||||||
Natural variations | |||||||||
| Natural variant | 42 | 1 | E → D in HLCS deficiency and a breast cancer sample; somatic mutation; conserves enzymatic wild-type activity; unknown pathological significance. Ref.4 Ref.19 | VAR_035800 | |||||
| Natural variant | 183 | 1 | R → P in HLCS deficiency; has normal or low KM values for biotin (non-KM mutant). Ref.15 | VAR_046507 | |||||
| Natural variant | 216 | 1 | L → R in HLCS deficiency; has normal or low KM values for biotin (non-KM mutant); growth of patients' fibroblasts is compromised compared with normal fibroblasts; patients cells are not sensitive to biotin-depletion from the media; growth rates cannot be restored by re-administration of biotin; enzyme activity is severely compromised and cannot be increased by additional biotin; turn-over rate for the mutant protein is double that of wild-type enzyme. Ref.12 Ref.15 Ref.16 Ref.20 Corresponds to variant rs28934602 [ dbSNP | Ensembl ]. | VAR_021218 | |||||
| Natural variant | 237 | 1 | L → P in HLCS deficiency; has normal or low KM values for biotin (non-KM mutant). Ref.1 Ref.4 Ref.11 Ref.13 Ref.15 | VAR_005084 | |||||
| Natural variant | 333 | 1 | V → E in HLCS deficiency; <10% activity; has normal or low KM values for biotin (non-KM mutant). Ref.4 Ref.14 Ref.15 | VAR_009196 | |||||
| Natural variant | 360 | 1 | R → S in HLCS deficiency; 22% activity; shows elevated KM values for biotin (KM mutant) compared with that of the wild-type form. Ref.4 | VAR_046508 | |||||
| Natural variant | 363 | 1 | V → D in HLCS deficiency; has normal or low KM values for biotin (non-KM mutant). Ref.12 Ref.15 | VAR_046509 | |||||
| Natural variant | 456 | 1 | Y → C in HLCS deficiency; 0.2% activity. Ref.4 | VAR_046510 | |||||
| Natural variant | 462 | 1 | T → I in HLCS deficiency; <10% activity. Ref.14 | VAR_009197 | |||||
| Natural variant | 470 | 1 | L → S in HLCS deficiency; 4.3% activity. Ref.4 | VAR_046511 | |||||
| Natural variant | 508 | 1 | R → W in HLCS deficiency. Ref.4 Ref.12 Ref.17 | VAR_013009 | |||||
| Natural variant | 511 | 1 | N → K in HLCS deficiency. Ref.16 | VAR_021219 | |||||
| Natural variant | 518 | 1 | G → E in HLCS deficiency. Ref.12 | VAR_046512 | |||||
| Natural variant | 547 | 1 | V → G in HLCS deficiency; 3.4% activity. Ref.4 | VAR_046513 | |||||
| Natural variant | 550 | 1 | V → M in HLCS deficiency. Ref.4 Ref.12 Ref.13 Ref.17 | VAR_009198 | |||||
| Natural variant | 571 | 1 | D → N in HLCS deficiency; almost no activity. Ref.12 Ref.14 | VAR_009199 | |||||
| Natural variant | 581 | 1 | G → S in HLCS deficiency; <10% activity. Ref.4 Ref.14 Ref.15 Ref.16 | VAR_009200 | |||||
| Natural variant | 582 | 1 | G → R in HLCS deficiency. Ref.16 | VAR_021220 | |||||
| Natural variant | 610 | 1 | Missing in HLCS deficiency; 14% of activity; shows elevated KM values for biotin (KM mutant) compared with that of the wild-type form. Ref.4 Ref.14 Ref.15 | VAR_009201 | |||||
| Natural variant | 615 | 1 | D → Y in HLCS deficiency. Ref.18 | VAR_046514 | |||||
| Natural variant | 634 | 1 | D → N in HLCS deficiency. Ref.17 | VAR_046515 | |||||
| Natural variant | 634 | 1 | D → Y in HLCS deficiency; 12% activity. Ref.4 | VAR_046516 | |||||
| Natural variant | 715 | 1 | D → G in HLCS deficiency. Ref.18 | VAR_046517 | |||||
Experimental info | |||||||||
| Sequence conflict | 558 | 1 | E → K in BAA13332. Ref.2 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Isolation and characterization of mutations in the human holocarboxylase synthetase cDNA." Suzuki Y., Aoki Y., Ishida Y., Chiba Y., Iwamatsu A., Kishino T., Niikawa N., Matsubara Y., Narisawa K. Nat. Genet. 8:122-128(1994) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA], VARIANT HLCS DEFICIENCY PRO-237. Tissue: Liver. |
| [2] | "Gene identification in the 1.6 Mb of the Down syndrome region on chromosome 21." Ohira M., Seki N., Nagase T., Suzuki E., Nomura N., Ohara O., Hattori M., Sakaki Y., Eki T., Murakami Y., Saito T., Ichikawa H., Ohki M. Submitted (FEB-1997) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA]. Tissue: Bone marrow. |
| [3] | "Genomic sequencing of 1.2-Mb region on human chromosome 21q22.2." Shibuya K., Kudoh J., Minoshima S., Kawasaki K., Nakatoh E., Shintani A., Asakawa S., Shimizu N. Submitted (NOV-1999) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. |
| [4] | "Structure of human holocarboxylase synthetase gene and mutation spectrum of holocarboxylase synthetase deficiency." Yang X., Aoki Y., Li X., Sakamoto O., Hiratsuka M., Kure S., Taheri S., Christensen E., Inui K., Kubota M., Ohira M., Ohki M., Kudoh J., Kawasaki K., Shibuya K., Shintani A., Asakawa S., Minoshima S. Suzuki Y.Hum. Genet. 109:526-534(2001) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], VARIANTS HLCS DEFICIENCY ASP-42; PRO-237; GLU-333; SER-360; CYS-456; SER-470; TRP-508; GLY-547; MET-550; SER-581; THR-610 DEL AND TYR-634, CHARACTERIZATION OF VARIANTS HLCS DEFICIENCY ASP-42; SER-360; CYS-456; SER-470; GLY-547 AND TYR-634. |
| [5] | "The DNA sequence of human chromosome 21." Hattori M., Fujiyama A., Taylor T.D., Watanabe H., Yada T., Park H.-S., Toyoda A., Ishii K., Totoki Y., Choi D.-K., Groner Y., Soeda E., Ohki M., Takagi T., Sakaki Y., Taudien S., Blechschmidt K., Polley A. Yaspo M.-L.Nature 405:311-319(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [6] | Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. Venter J.C.Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [7] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Placenta. |
| [8] | "Transcriptional map of the 2.5-Mb CBR-ERG region of chromosome 21 involved in Down syndrome." Dahmane N., Ait-Ghezala G., Gosset P., Chamoun Z., Dufresne-Zacharia M.-C., Lopes C., Rabatel N., Gassanova-Maugenre S., Chettouh Z., Abramowski V., Fayet E., Yaspo M.-L., Korn B., Blouin J.-L., Lehrach H., Poustka A., Antonarakis S.E., Sinet P.-M., Creau N., Delabar J.-M. Genomics 48:12-23(1998) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 1-92. Tissue: Brain. |
| [9] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-147, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [10] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [11] | "Molecular analysis of holocarboxylase synthetase deficiency: a missense mutation and a single base deletion are predominant in Japanese patients." Aoki Y., Suzuki Y., Sakamoto O., Li X., Takahashi K., Ohtake A., Sakuta R., Ohura T., Miyabayashi S., Narisawa K. Biochim. Biophys. Acta 1272:168-174(1995) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANT HLCS DEFICIENCY PRO-237. |
| [12] | "Clustering of mutations in the biotin-binding region of holocarboxylase synthetase in biotin-responsive multiple carboxylase deficiency." Dupuis L., Leon-Del-Rio A., Leclerc D., Campeau E., Sweetman L., Saudubray J.-M., Herman G., Gibson K.M., Gravel R.A. Hum. Mol. Genet. 5:1011-1016(1996) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS HLCS DEFICIENCY ARG-216; ASP-363; TRP-508; GLU-518; MET-550 AND ASN-571. |
| [13] | "Characterization of mutant holocarboxylase synthetase (HCS): a Km for biotin was not elevated in a patient with HCS deficiency." Aoki Y., Suzuki Y., Li X., Sakamoto O., Chikaoka H., Takita S., Narisawa K. Pediatr. Res. 42:849-854(1997) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS HLCS DEFICIENCY PRO-237 AND MET-550. |
| [14] | "Identification and characterization of mutations in patients with holocarboxylase synthetase deficiency." Aoki Y., Li X., Sakamoto O., Hiratsuka M., Akaishi H., Xu L., Briones P., Suormala T., Baumgartner E.R., Suzuki Y., Narisawa K. Hum. Genet. 104:143-148(1999) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS HLCS DEFICIENCY GLU-333; ILE-462; ASN-571; SER-581 AND THR-610 DEL. |
| [15] | "Relationship between kinetic properties of mutant enzyme and biochemical and clinical responsiveness to biotin in holocarboxylase synthetase deficiency." Sakamoto O., Suzuki Y., Li X., Aoki Y., Hiratsuka M., Suormala T., Baumgartner E.R., Gibson K.M., Narisawa K. Pediatr. Res. 46:671-676(1999) [PubMed] [Europe PMC] [Abstract] Cited for: BIOPHYSICOCHEMICAL PROPERTIES, VARIANTS HLCS DEFICIENCY PRO-183; ARG-216; PRO-237; GLU-333; ASP-363; SER-581 AND THR-610 DEL, CHARACTERIZATION OF VARIANTS HLCS DEFICIENCY PRO-183; ARG-216; PRO-237; GLU-333; ASP-363; SER-581 AND THR-610 DEL. |
| [16] | "Clinical findings and biochemical and molecular analysis of four patients with holocarboxylase synthetase deficiency." Morrone A., Malvagia S., Donati M.A., Funghini S., Ciani F., Pela I., Boneh A., Peters H., Pasquini E., Zammarchi E. Am. J. Med. Genet. 111:10-18(2002) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS HLCS DEFICIENCY ARG-216; LYS-511; SER-581 AND ARG-582. |
| [17] | "A genomic approach to mutation analysis of holocarboxylase synthetase gene in three Chinese patients with late-onset holocarboxylase synthetase deficiency." Tang N.L.S., Hui J., Yong C.K.K., Wong L.T.K., Applegarth D.A., Vallance H.D., Law L.K., Fung S.L.M., Mak T.W.L., Sung Y.M., Cheung K.L., Fok T.F. Clin. Biochem. 36:145-149(2003) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS HLCS DEFICIENCY TRP-508; MET-550 AND ASN-634. |
| [18] | "Mutations in the holocarboxylase synthetase gene HLCS." Suzuki Y., Yang X., Aoki Y., Kure S., Matsubara Y. Hum. Mutat. 26:285-290(2005) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANTS HLCS DEFICIENCY TYR-615 AND GLY-715. |
| [19] | "The consensus coding sequences of human breast and colorectal cancers." Sjoeblom T., Jones S., Wood L.D., Parsons D.W., Lin J., Barber T.D., Mandelker D., Leary R.J., Ptak J., Silliman N., Szabo S., Buckhaults P., Farrell C., Meeh P., Markowitz S.D., Willis J., Dawson D., Willson J.K.V. Velculescu V.E.Science 314:268-274(2006) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANT [LARGE SCALE ANALYSIS] ASP-42. |
| [20] | "Reduced half-life of holocarboxylase synthetase from patients with severe multiple carboxylase deficiency." Bailey L.M., Ivanov R.A., Jitrapakdee S., Wilson C.J., Wallace J.C., Polyak S.W. Hum. Mutat. 29:E47-E57(2008) [PubMed] [Europe PMC] [Abstract] Cited for: CHARACTERIZATION OF VARIANT HLCS DEFICIENCY ARG-216. |
| + | Additional computationally mapped references. |
Web resources
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | D23672 mRNA. Translation: BAA04902.1. D87328 mRNA. Translation: BAA13332.1. AP000697 AP000698 Genomic DNA. Translation: BAA89434.1.AB063285 Genomic DNA. Translation: BAB68550.1. AP001727 Genomic DNA. Translation: BAA95511.1. AP001726 Genomic DNA. Translation: BAA95510.1. CH471079 Genomic DNA. Translation: EAX09731.1. CH471079 Genomic DNA. Translation: EAX09732.1. BC060787 mRNA. Translation: AAH60787.1. AJ001864 mRNA. Translation: CAA05056.1. |
| IPI | IPI00301907. |
| PIR | S50833. |
| RefSeq | NP_000402.3. NM_000411.6. NP_001229713.1. NM_001242784.1. NP_001229714.1. NM_001242785.1. |
| UniGene | Hs.371350. Hs.732538. |
3D structure databases | |
| ProteinModelPortal | P50747. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | P50747. 2 interactions. |
| STRING | 9606.ENSP00000338387. |
PTM databases | |
| PhosphoSite | P50747. |
Polymorphism databases | |
| DMDM | 1705499. |
Proteomic databases | |
| PaxDb | P50747. |
| PRIDE | P50747. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000336648; ENSP00000338387; ENSG00000159267. ENST00000399120; ENSP00000382071; ENSG00000159267. ENST00000448340; ENSP00000392923; ENSG00000159267. |
| GeneID | 3141. |
| KEGG | hsa:3141. |
| UCSC | uc002yvs.3. human. |
Organism-specific databases | |
| CTD | 3141. |
| GeneCards | GC21M038123. |
| HGNC | HGNC:4976. HLCS. |
| HPA | HPA017379. |
| MIM | 253270. phenotype. 609018. gene. |
| neXtProt | NX_P50747. |
| Orphanet | 79242. Holocarboxylase synthetase deficiency. |
| PharmGKB | PA29310. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | COG0340. |
| HOGENOM | HOG000095254. |
| HOVERGEN | HBG004872. |
| InParanoid | P50747. |
| KO | K01942. |
| OMA | FQDKGPN. |
| OrthoDB | EOG4B2SWK. |
| PhylomeDB | P50747. |
Gene expression databases | |
| ArrayExpress | P50747. |
| Bgee | P50747. |
| CleanEx | HS_HLCS. |
| Genevestigator | P50747. |
| GermOnline | ENSG00000159267. Homo sapiens. |
Family and domain databases | |
| InterPro | IPR004408. Biotin_CoA_COase_ligase. IPR003142. BPL_C. IPR004143. BPL_LipA_LipB. [Graphical view] |
| PANTHER | PTHR12835. PTHR12835. 1 hit. |
| Pfam | PF02237. BPL_C. 1 hit. PF03099. BPL_LplA_LipB. 1 hit. [Graphical view] |
| TIGRFAMs | TIGR00121. birA_ligase. 1 hit. |
| ProtoNet | Search... |
Other | |
| DrugBank | DB00121. Biotin. |
| GenomeRNAi | 3141. |
| NextBio | 12456. |
| SOURCE | Search... |
Entry information
| Entry name | BPL1_HUMAN | ||||||||
| Accession | Primary (citable) accession number: P50747 Secondary accession number(s): D3DSG6, Q99451 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 21 Human chromosome 21: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
