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Protein

Protein NrdI

Gene

nrdI

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Probably involved in ribonucleotide reductase function.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciBSUB:BSU17370-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein NrdI
Gene namesi
Name:nrdI
Synonyms:ymaA
Ordered Locus Names:BSU17370
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 130130Protein NrdIPRO_0000164305Add
BLAST

Proteomic databases

PaxDbiP50618.

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100009556.

Structurei

Secondary structure

1
130
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi3 – 64Combined sources
Beta strandi9 – 113Combined sources
Helixi12 – 176Combined sources
Beta strandi23 – 275Combined sources
Beta strandi38 – 425Combined sources
Helixi46 – 483Combined sources
Helixi52 – 6110Combined sources
Helixi62 – 643Combined sources
Beta strandi65 – 728Combined sources
Helixi74 – 796Combined sources
Helixi82 – 9110Combined sources
Beta strandi95 – 1006Combined sources
Helixi105 – 12218Combined sources
Turni123 – 1253Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1RLJX-ray2.00A1-130[»]
ProteinModelPortaliP50618.
SMRiP50618. Positions 1-126.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP50618.

Family & Domainsi

Sequence similaritiesi

Belongs to the NrdI family.Curated

Phylogenomic databases

eggNOGiENOG4105G3E. Bacteria.
COG1780. LUCA.
HOGENOMiHOG000246177.
InParanoidiP50618.
KOiK03647.
OMAiNVKRFIN.
OrthoDBiEOG6W19RD.
PhylomeDBiP50618.

Family and domain databases

Gene3Di3.40.50.360. 1 hit.
HAMAPiMF_00128. NrdI.
InterProiIPR029039. Flavoprotein-like_dom.
IPR020852. RNR_Ib_NrdI_bac.
IPR004465. RNR_NrdI.
[Graphical view]
PfamiPF07972. Flavodoxin_NdrI. 1 hit.
[Graphical view]
PIRSFiPIRSF005087. NrdI. 1 hit.
SUPFAMiSSF52218. SSF52218. 1 hit.
TIGRFAMsiTIGR00333. nrdI. 1 hit.

Sequencei

Sequence statusi: Complete.

P50618-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVQIIFDSKT GNVQRFVNKT GFQQIRKVDE MDHVDTPFVL VTYTTNFGQV
60 70 80 90 100
PASTQSFLEK YAHLLLGVAA SGNKVWGDNF AKSADTISRQ YQVPILHKFE
110 120 130
LSGTSKDVEL FTQEVERVVT KSSAKMDPVK
Length:130
Mass (Da):14,603
Last modified:October 1, 1996 - v1
Checksum:iEF76AAB3842CDFF3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z68500 Genomic DNA. Translation: CAA92809.1.
AL009126 Genomic DNA. Translation: CAB13621.1.
PIRiC69883.
RefSeqiNP_389619.1. NC_000964.3.
WP_003231758.1. NZ_JNCM01000035.1.

Genome annotation databases

EnsemblBacteriaiCAB13621; CAB13621; BSU17370.
GeneIDi940075.
KEGGibsu:BSU17370.
PATRICi18975285. VBIBacSub10457_1834.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z68500 Genomic DNA. Translation: CAA92809.1.
AL009126 Genomic DNA. Translation: CAB13621.1.
PIRiC69883.
RefSeqiNP_389619.1. NC_000964.3.
WP_003231758.1. NZ_JNCM01000035.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1RLJX-ray2.00A1-130[»]
ProteinModelPortaliP50618.
SMRiP50618. Positions 1-126.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100009556.

Proteomic databases

PaxDbiP50618.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB13621; CAB13621; BSU17370.
GeneIDi940075.
KEGGibsu:BSU17370.
PATRICi18975285. VBIBacSub10457_1834.

Phylogenomic databases

eggNOGiENOG4105G3E. Bacteria.
COG1780. LUCA.
HOGENOMiHOG000246177.
InParanoidiP50618.
KOiK03647.
OMAiNVKRFIN.
OrthoDBiEOG6W19RD.
PhylomeDBiP50618.

Enzyme and pathway databases

BioCyciBSUB:BSU17370-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP50618.

Family and domain databases

Gene3Di3.40.50.360. 1 hit.
HAMAPiMF_00128. NrdI.
InterProiIPR029039. Flavoprotein-like_dom.
IPR020852. RNR_Ib_NrdI_bac.
IPR004465. RNR_NrdI.
[Graphical view]
PfamiPF07972. Flavodoxin_NdrI. 1 hit.
[Graphical view]
PIRSFiPIRSF005087. NrdI. 1 hit.
SUPFAMiSSF52218. SSF52218. 1 hit.
TIGRFAMsiTIGR00333. nrdI. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The Bacillus subtilis genes for ribonucleotide reductase are similar to the genes for the second class I NrdE/NrdF enzymes of Enterobacteriaceae."
    Scotti C., Valbuzzi A., Perego M., Galizzi A., Albertini A.M.
    Microbiology 142:2995-3004(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: 168.
  2. "The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
    Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V.
    , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
    Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 168.

Entry informationi

Entry nameiNRDI_BACSU
AccessioniPrimary (citable) accession number: P50618
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: October 1, 1996
Last modified: June 8, 2016
This is version 108 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.