Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Protein NrdI

Gene

nrdI

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Probably involved in ribonucleotide reductase function.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciBSUB:BSU17370-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein NrdI
Gene namesi
Name:nrdI
Synonyms:ymaA
Ordered Locus Names:BSU17370
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 130130Protein NrdIPRO_0000164305Add
BLAST

Proteomic databases

PaxDbiP50618.

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100009556.

Structurei

Secondary structure

1
130
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi3 – 64Combined sources
Beta strandi9 – 113Combined sources
Helixi12 – 176Combined sources
Beta strandi23 – 275Combined sources
Beta strandi38 – 425Combined sources
Helixi46 – 483Combined sources
Helixi52 – 6110Combined sources
Helixi62 – 643Combined sources
Beta strandi65 – 728Combined sources
Helixi74 – 796Combined sources
Helixi82 – 9110Combined sources
Beta strandi95 – 1006Combined sources
Helixi105 – 12218Combined sources
Turni123 – 1253Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1RLJX-ray2.00A1-130[»]
ProteinModelPortaliP50618.
SMRiP50618. Positions 1-126.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP50618.

Family & Domainsi

Sequence similaritiesi

Belongs to the NrdI family.Curated

Phylogenomic databases

eggNOGiENOG4105G3E. Bacteria.
COG1780. LUCA.
HOGENOMiHOG000246177.
InParanoidiP50618.
KOiK03647.
OMAiNVKRFIN.
PhylomeDBiP50618.

Family and domain databases

Gene3Di3.40.50.360. 1 hit.
HAMAPiMF_00128. NrdI. 1 hit.
InterProiIPR029039. Flavoprotein-like_dom.
IPR020852. RNR_Ib_NrdI_bac.
IPR004465. RNR_NrdI.
[Graphical view]
PfamiPF07972. Flavodoxin_NdrI. 1 hit.
[Graphical view]
PIRSFiPIRSF005087. NrdI. 1 hit.
SUPFAMiSSF52218. SSF52218. 1 hit.
TIGRFAMsiTIGR00333. nrdI. 1 hit.

Sequencei

Sequence statusi: Complete.

P50618-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVQIIFDSKT GNVQRFVNKT GFQQIRKVDE MDHVDTPFVL VTYTTNFGQV
60 70 80 90 100
PASTQSFLEK YAHLLLGVAA SGNKVWGDNF AKSADTISRQ YQVPILHKFE
110 120 130
LSGTSKDVEL FTQEVERVVT KSSAKMDPVK
Length:130
Mass (Da):14,603
Last modified:October 1, 1996 - v1
Checksum:iEF76AAB3842CDFF3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z68500 Genomic DNA. Translation: CAA92809.1.
AL009126 Genomic DNA. Translation: CAB13621.1.
PIRiC69883.
RefSeqiNP_389619.1. NC_000964.3.
WP_003231758.1. NZ_JNCM01000035.1.

Genome annotation databases

EnsemblBacteriaiCAB13621; CAB13621; BSU17370.
GeneIDi940075.
KEGGibsu:BSU17370.
PATRICi18975285. VBIBacSub10457_1834.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z68500 Genomic DNA. Translation: CAA92809.1.
AL009126 Genomic DNA. Translation: CAB13621.1.
PIRiC69883.
RefSeqiNP_389619.1. NC_000964.3.
WP_003231758.1. NZ_JNCM01000035.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1RLJX-ray2.00A1-130[»]
ProteinModelPortaliP50618.
SMRiP50618. Positions 1-126.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100009556.

Proteomic databases

PaxDbiP50618.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB13621; CAB13621; BSU17370.
GeneIDi940075.
KEGGibsu:BSU17370.
PATRICi18975285. VBIBacSub10457_1834.

Phylogenomic databases

eggNOGiENOG4105G3E. Bacteria.
COG1780. LUCA.
HOGENOMiHOG000246177.
InParanoidiP50618.
KOiK03647.
OMAiNVKRFIN.
PhylomeDBiP50618.

Enzyme and pathway databases

BioCyciBSUB:BSU17370-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP50618.

Family and domain databases

Gene3Di3.40.50.360. 1 hit.
HAMAPiMF_00128. NrdI. 1 hit.
InterProiIPR029039. Flavoprotein-like_dom.
IPR020852. RNR_Ib_NrdI_bac.
IPR004465. RNR_NrdI.
[Graphical view]
PfamiPF07972. Flavodoxin_NdrI. 1 hit.
[Graphical view]
PIRSFiPIRSF005087. NrdI. 1 hit.
SUPFAMiSSF52218. SSF52218. 1 hit.
TIGRFAMsiTIGR00333. nrdI. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiNRDI_BACSU
AccessioniPrimary (citable) accession number: P50618
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: October 1, 1996
Last modified: September 7, 2016
This is version 109 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.