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P50358

- Y4SN_RHISN

UniProt

P50358 - Y4SN_RHISN

Protein

Uncharacterized protein y4sN

Gene

NGR_a01590

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed - Annotation score: 1 out of 5- Protein predictedi
  1. Functioni

    GO - Biological processi

    1. transposition Source: UniProtKB-KW

    Keywords - Biological processi

    Transposition

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Uncharacterized protein y4sN
    Gene namesi
    Ordered Locus Names:NGR_a01590
    ORF Names:y4sN
    Encoded oniPlasmid sym pNGR234a0 Publication
    OrganismiRhizobium sp. (strain NGR234)
    Taxonomic identifieri394 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
    ProteomesiUP000001054: Plasmid sym pNGR234a

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 125125Uncharacterized protein y4sNPRO_0000200948Add
    BLAST

    Family & Domainsi

    Sequence similaritiesi

    To transposase of insertion sequence IS6501.Curated

    Phylogenomic databases

    eggNOGiCOG3293.
    HOGENOMiHOG000254172.
    OMAiLEWLMID.
    OrthoDBiEOG6XWV6M.

    Family and domain databases

    InterProiIPR025161. Put_IS4/IS5.
    [Graphical view]
    PfamiPF13340. DUF4096. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P50358-1 [UniParc]FASTAAdd to Basket

    « Hide

    MDCDGLRDDQ WERIRGFVPG GTKGKRGPRT NNRLFLDALL WMARSGGRWR    50
    DLPERLGDYR AVKRRYYRWI EMGVLDEMLA VLAREADLEW LMIDSTIVRA 100
    HQHAAGARRA KGGRMPRAWV GLEAG 125
    Length:125
    Mass (Da):14,424
    Last modified:November 1, 1997 - v2
    Checksum:iB692CFFDE1DC2AFE
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti47 – 471G → D in CAA52363. (PubMed:8190622)Curated
    Sequence conflicti64 – 641R → L in CAA52363. (PubMed:8190622)Curated

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U00090 Genomic DNA. Translation: AAB91853.1.
    X74314 Genomic DNA. Translation: CAA52363.1.
    PIRiS35957.
    RefSeqiNP_444066.1. NC_000914.2.
    YP_002823938.1. NC_012586.1.

    Genome annotation databases

    EnsemblBacteriaiAAB91853; AAB91853; NGR_a01590.
    GeneIDi7789057.
    962223.
    KEGGirhi:NGR_a01590.
    rhi:NGR_b17340.
    PATRICi32301025. VBIRhiSp122450_0148.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U00090 Genomic DNA. Translation: AAB91853.1 .
    X74314 Genomic DNA. Translation: CAA52363.1 .
    PIRi S35957.
    RefSeqi NP_444066.1. NC_000914.2.
    YP_002823938.1. NC_012586.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAB91853 ; AAB91853 ; NGR_a01590 .
    GeneIDi 7789057.
    962223.
    KEGGi rhi:NGR_a01590.
    rhi:NGR_b17340.
    PATRICi 32301025. VBIRhiSp122450_0148.

    Phylogenomic databases

    eggNOGi COG3293.
    HOGENOMi HOG000254172.
    OMAi LEWLMID.
    OrthoDBi EOG6XWV6M.

    Family and domain databases

    InterProi IPR025161. Put_IS4/IS5.
    [Graphical view ]
    Pfami PF13340. DUF4096. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Molecular basis of symbiosis between Rhizobium and legumes."
      Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
      Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NGR234.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NGR234.
    3. "Subtraction hybridisation and shot-gun sequencing: a new approach to identify symbiotic loci."
      Perret X., Fellay R., Bjourson A.J., Cooper J.E., Brenner S., Broughton W.J.
      Nucleic Acids Res. 22:1335-1341(1994) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-123.

    Entry informationi

    Entry nameiY4SN_RHISN
    AccessioniPrimary (citable) accession number: P50358
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: October 1, 1996
    Last sequence update: November 1, 1997
    Last modified: October 1, 2014
    This is version 56 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Plasmid, Reference proteome, Transposable element

    Documents

    1. Rhizobium plasmid pNGR234a
      Rhizobium plasmid pNGR234a: entries and gene names

    External Data

    Dasty 3