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P50358

- Y4SN_RHISN

UniProt

P50358 - Y4SN_RHISN

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Protein

Uncharacterized protein y4sN

Gene

NGR_a01590

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Biological processi

  1. transposition Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transposition

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein y4sN
Gene namesi
Ordered Locus Names:NGR_a01590
ORF Names:y4sN
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiRhizobium sp. (strain NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001054: Plasmid sym pNGR234a

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 125125Uncharacterized protein y4sNPRO_0000200948Add
BLAST

Family & Domainsi

Sequence similaritiesi

To transposase of insertion sequence IS6501.Curated

Phylogenomic databases

eggNOGiCOG3293.
HOGENOMiHOG000254172.
OMAiLEWLMID.
OrthoDBiEOG6XWV6M.

Family and domain databases

InterProiIPR025161. Put_IS4/IS5.
[Graphical view]
PfamiPF13340. DUF4096. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P50358-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MDCDGLRDDQ WERIRGFVPG GTKGKRGPRT NNRLFLDALL WMARSGGRWR
60 70 80 90 100
DLPERLGDYR AVKRRYYRWI EMGVLDEMLA VLAREADLEW LMIDSTIVRA
110 120
HQHAAGARRA KGGRMPRAWV GLEAG
Length:125
Mass (Da):14,424
Last modified:November 1, 1997 - v2
Checksum:iB692CFFDE1DC2AFE
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti47 – 471G → D in CAA52363. (PubMed:8190622)Curated
Sequence conflicti64 – 641R → L in CAA52363. (PubMed:8190622)Curated

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U00090 Genomic DNA. Translation: AAB91853.1.
X74314 Genomic DNA. Translation: CAA52363.1.
PIRiS35957.
RefSeqiNP_444066.1. NC_000914.2.
WP_010875195.1. NC_012586.1.
YP_002823938.1. NC_012586.1.

Genome annotation databases

EnsemblBacteriaiAAB91853; AAB91853; NGR_a01590.
GeneIDi7789057.
962223.
KEGGirhi:NGR_a01590.
rhi:NGR_b17340.
PATRICi32301025. VBIRhiSp122450_0148.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U00090 Genomic DNA. Translation: AAB91853.1 .
X74314 Genomic DNA. Translation: CAA52363.1 .
PIRi S35957.
RefSeqi NP_444066.1. NC_000914.2.
WP_010875195.1. NC_012586.1.
YP_002823938.1. NC_012586.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAB91853 ; AAB91853 ; NGR_a01590 .
GeneIDi 7789057.
962223.
KEGGi rhi:NGR_a01590.
rhi:NGR_b17340.
PATRICi 32301025. VBIRhiSp122450_0148.

Phylogenomic databases

eggNOGi COG3293.
HOGENOMi HOG000254172.
OMAi LEWLMID.
OrthoDBi EOG6XWV6M.

Family and domain databases

InterProi IPR025161. Put_IS4/IS5.
[Graphical view ]
Pfami PF13340. DUF4096. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Molecular basis of symbiosis between Rhizobium and legumes."
    Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
    Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.
  3. "Subtraction hybridisation and shot-gun sequencing: a new approach to identify symbiotic loci."
    Perret X., Fellay R., Bjourson A.J., Cooper J.E., Brenner S., Broughton W.J.
    Nucleic Acids Res. 22:1335-1341(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-123.

Entry informationi

Entry nameiY4SN_RHISN
AccessioniPrimary (citable) accession number: P50358
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: November 1, 1997
Last modified: October 29, 2014
This is version 57 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid, Reference proteome, Transposable element

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names

External Data

Dasty 3