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Protein

Uncharacterized protein y4sN

Gene

NGR_a01590

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Biological processi

  1. transposition Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transposition

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein y4sN
Gene namesi
Ordered Locus Names:NGR_a01590
ORF Names:y4sN
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiRhizobium sp. (strain NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001054 Componenti: Plasmid sym pNGR234a

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 125125Uncharacterized protein y4sNPRO_0000200948Add
BLAST

Family & Domainsi

Sequence similaritiesi

To transposase of insertion sequence IS6501.Curated

Phylogenomic databases

eggNOGiCOG3293.
HOGENOMiHOG000254172.
OMAiLEWLMID.
OrthoDBiEOG6XWV6M.

Family and domain databases

InterProiIPR025161. Put_IS4/IS5.
[Graphical view]
PfamiPF13340. DUF4096. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P50358-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDCDGLRDDQ WERIRGFVPG GTKGKRGPRT NNRLFLDALL WMARSGGRWR
60 70 80 90 100
DLPERLGDYR AVKRRYYRWI EMGVLDEMLA VLAREADLEW LMIDSTIVRA
110 120
HQHAAGARRA KGGRMPRAWV GLEAG
Length:125
Mass (Da):14,424
Last modified:November 1, 1997 - v2
Checksum:iB692CFFDE1DC2AFE
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti47 – 471G → D in CAA52363 (PubMed:8190622).Curated
Sequence conflicti64 – 641R → L in CAA52363 (PubMed:8190622).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB91853.1.
X74314 Genomic DNA. Translation: CAA52363.1.
PIRiS35957.
RefSeqiNP_444066.1. NC_000914.2.
YP_002823938.1. NC_012586.1.
YP_009078575.1. NG_035910.1.

Genome annotation databases

EnsemblBacteriaiAAB91853; AAB91853; NGR_a01590.
GeneIDi7789057.
962223.
KEGGirhi:NGR_a01590.
rhi:NGR_b17340.
PATRICi32301025. VBIRhiSp122450_0148.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB91853.1.
X74314 Genomic DNA. Translation: CAA52363.1.
PIRiS35957.
RefSeqiNP_444066.1. NC_000914.2.
YP_002823938.1. NC_012586.1.
YP_009078575.1. NG_035910.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB91853; AAB91853; NGR_a01590.
GeneIDi7789057.
962223.
KEGGirhi:NGR_a01590.
rhi:NGR_b17340.
PATRICi32301025. VBIRhiSp122450_0148.

Phylogenomic databases

eggNOGiCOG3293.
HOGENOMiHOG000254172.
OMAiLEWLMID.
OrthoDBiEOG6XWV6M.

Family and domain databases

InterProiIPR025161. Put_IS4/IS5.
[Graphical view]
PfamiPF13340. DUF4096. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Molecular basis of symbiosis between Rhizobium and legumes."
    Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
    Nature 387:394-401(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.
  3. "Subtraction hybridisation and shot-gun sequencing: a new approach to identify symbiotic loci."
    Perret X., Fellay R., Bjourson A.J., Cooper J.E., Brenner S., Broughton W.J.
    Nucleic Acids Res. 22:1335-1341(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-123.

Entry informationi

Entry nameiY4SN_RHISN
AccessioniPrimary (citable) accession number: P50358
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: November 1, 1997
Last modified: January 7, 2015
This is version 59 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid, Reference proteome, Transposable element

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.