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Protein

Nodulation protein D 1

Gene

nodD1

Organism
Bradyrhizobium sp. (strain NC92)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

NodD regulates the expression of the nodABCFE genes which encode other nodulation proteins. NodD is also a negative regulator of its own expression. Binds flavonoids as inducers.

Miscellaneous

There are at least two nodD genes in B.sp strain NC92.

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi23 – 42H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionActivator, DNA-binding, Repressor
Biological processNodulation, Transcription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Nodulation protein D 1
Gene namesi
Name:nodD1
OrganismiBradyrhizobium sp. (strain NC92)
Taxonomic identifieri55395 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeBradyrhizobium

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001057071 – 314Nodulation protein D 1Add BLAST314

Structurei

3D structure databases

ProteinModelPortaliP50327.
SMRiP50327.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini6 – 63HTH lysR-typePROSITE-ProRule annotationAdd BLAST58

Family and domain databases

CDDicd08462. PBP2_NodD. 1 hit.
Gene3Di1.10.10.10. 1 hit.
InterProiView protein in InterPro
IPR005119. LysR_subst-bd.
IPR037416. NodD_PBP2.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR036388. WH-like_DNA-bd_sf.
IPR036390. WH_DNA-bd_sf.
PfamiView protein in Pfam
PF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
PRINTSiPR00039. HTHLYSR.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiView protein in PROSITE
PS50931. HTH_LYSR. 1 hit.

Sequencei

Sequence statusi: Complete.

P50327-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRFKGLDLNL LVALDALMTE RNLTAAARKI HLSQPAMSAA VARLRTYFGD
60 70 80 90 100
ELFTMRGREL VPTPRAEGLA APIREALLHI QLSIISRDAF DPAESSRRFR
110 120 130 140 150
IILSDFMTIV FFRRIIDRVA REAPAVRFEL LPFSDEHDEL LRRGEVDFLV
160 170 180 190 200
FPELFMSSAH PKATLFEETL VCVGCRTNKQ LSRQLTVEKY MSMGHVAAKF
210 220 230 240 250
GRALRPNIEE WFLLEHGLKR RIEVVVQGFG MIPPVLVDTV RIGTMPLRLA
260 270 280 290 300
KHFEKQMLLK IVEPPLPLPS FTEAVQWPAA KNTDPASIWM RRIILQEAAN
310
MASAHEAARH RRHC
Length:314
Mass (Da):35,827
Last modified:October 1, 1996 - v1
Checksum:i62F3A8AAC77EB788
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U33192 Genomic DNA. Translation: AAB06562.1.

Similar proteinsi

Entry informationi

Entry nameiNODD1_BRASN
AccessioniPrimary (citable) accession number: P50327
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: October 1, 1996
Last modified: January 31, 2018
This is version 67 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program