Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Nodulation protein D 1

Gene

nodD1

Organism
Bradyrhizobium elkanii
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

NodD regulates the expression of the nodABCFE genes which encode other nodulation proteins. NodD is also a negative regulator of its own expression. Binds flavonoids as inducers.

Miscellaneous

There are at least two nodD genes in B.elkanii.

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi23 – 42H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionActivator, DNA-binding, Repressor
Biological processNodulation, Transcription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Nodulation protein D 1
Gene namesi
Name:nodD1
OrganismiBradyrhizobium elkanii
Taxonomic identifieri29448 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeBradyrhizobium

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001057011 – 314Nodulation protein D 1Add BLAST314

Structurei

3D structure databases

ProteinModelPortaliP50323.
SMRiP50323.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini6 – 63HTH lysR-typePROSITE-ProRule annotationAdd BLAST58

Family and domain databases

CDDicd08462. PBP2_NodD. 1 hit.
Gene3Di1.10.10.10. 1 hit.
InterProiView protein in InterPro
IPR005119. LysR_subst-bd.
IPR037416. NodD_PBP2.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR036388. WH-like_DNA-bd_sf.
IPR036390. WH_DNA-bd_sf.
PfamiView protein in Pfam
PF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
PRINTSiPR00039. HTHLYSR.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiView protein in PROSITE
PS50931. HTH_LYSR. 1 hit.

Sequencei

Sequence statusi: Complete.

P50323-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRFKGLDLNL LVALDALMTE RNLTAAARQI NLSQPAMSAA IARLRSYFRD
60 70 80 90 100
ELFTMRGREL VPTPGAEALA GPVREALLHI QLSIISRDAF DPTLSSRRFR
110 120 130 140 150
VILSDFMTIV FFRRIVDRIA QEAPAVRFEL LPFSDEPGEL LRRGEVDFLI
160 170 180 190 200
LPELFMSSAH PKATLFDETL VCVGCRTNKQ LLRPLTFEKY NSMGHVTAKF
210 220 230 240 250
GRALRPNLEE WFLLEHGLKR RIEVVVQGFS LIPPILFDTG RIGTMPLRLA
260 270 280 290 300
RHFEKWMPLR IVEPPLPLPT FTEAVQWPAF HNTDPASIWM RRILLEEASN
310
MGSADRKLPT RRRC
Length:314
Mass (Da):35,946
Last modified:October 1, 1996 - v1
Checksum:i55F2D8231F3C7FEC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U04609 Genomic DNA. Translation: AAA63598.1.
RefSeqiWP_016848464.1. NZ_MOXO01000099.1.

Genome annotation databases

GeneIDi23087654.

Similar proteinsi

Entry informationi

Entry nameiNODD1_BRAEL
AccessioniPrimary (citable) accession number: P50323
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: October 1, 1996
Last modified: January 31, 2018
This is version 65 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program