P49790 (NU153_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
January 25, 2012.
Version 109.
History...
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Nuclear pore complex protein Nup153 Alternative name(s): 153 kDa nucleoporin Nucleoporin Nup153 | ||
| Gene names |
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| Organism | Homo sapiens (Human) | ||
| Taxonomic identifier | 9606 [NCBI] | ||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 1475 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Possible DNA-binding subunit of the nuclear pore complex (NPC). The repeat-containing domain may be involved in anchoring components of the pore complex to the pore membrane. |
| Subunit structure | Interacts with SENP2 and XPO5. Interacts with HIV-1 integrase; this interaction might play a role in nuclear import of HIV pre-integration complex. Interacts with hepatitis B virus capsid protein; this interaction probably plays a role in nuclear import of HBV genome. Ref.4 Ref.15 Ref.16 |
| Subcellular location | Nucleus › nuclear pore complex. Note: Located to the terminal ring structure of the nucleoplasmic cage. Tightly associated with the nuclear membrane and lamina By similarity. |
| Domain | Contains F-X-F-G repeats. |
| Sequence similarities | Contains 4 RanBP2-type zinc fingers. |
Ontologies
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||||
Molecule processing | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Initiator methionine | 1 | 1 | Removed Ref.3 | ||||||||||
| Chain | 2 – 1475 | 1474 | Nuclear pore complex protein Nup153 | PRO_0000204842 | |||||||||
Regions | |||||||||||||
| Zinc finger | 657 – 687 | 31 | RanBP2-type 1 | ||||||||||
| Zinc finger | 722 – 751 | 30 | RanBP2-type 2 | ||||||||||
| Zinc finger | 793 – 822 | 30 | RanBP2-type 3 | ||||||||||
| Zinc finger | 851 – 880 | 30 | RanBP2-type 4 | ||||||||||
| Compositional bias | 4 – 14 | 11 | Gly-rich | ||||||||||
| Compositional bias | 443 – 447 | 5 | Poly-Gly | ||||||||||
Amino acid modifications | |||||||||||||
| Modified residue | 2 | 1 | N-acetylalanine Ref.3 Ref.12 | ||||||||||
| Modified residue | 209 | 1 | Phosphoserine Ref.7 Ref.10 Ref.11 Ref.12 Ref.13 | ||||||||||
| Modified residue | 240 | 1 | Phosphoserine Ref.11 | ||||||||||
| Modified residue | 257 | 1 | Phosphoserine Ref.9 Ref.11 Ref.13 | ||||||||||
| Modified residue | 260 | 1 | Phosphotyrosine Ref.12 Ref.13 | ||||||||||
| Modified residue | 281 | 1 | Phosphothreonine Ref.9 | ||||||||||
| Modified residue | 320 | 1 | Phosphoserine Ref.12 Ref.13 | ||||||||||
| Modified residue | 330 | 1 | Phosphoserine Ref.11 | ||||||||||
| Modified residue | 334 | 1 | Phosphoserine Ref.6 Ref.9 Ref.11 Ref.12 Ref.13 | ||||||||||
| Modified residue | 338 | 1 | Phosphoserine Ref.6 Ref.9 Ref.11 Ref.12 Ref.13 | ||||||||||
| Modified residue | 343 | 1 | Phosphoserine Ref.11 | ||||||||||
| Modified residue | 369 | 1 | Phosphothreonine Ref.11 | ||||||||||
| Modified residue | 384 | 1 | N6-acetyllysine Ref.14 | ||||||||||
| Modified residue | 516 | 1 | Phosphoserine Ref.11 Ref.12 Ref.13 | ||||||||||
| Modified residue | 518 | 1 | Phosphoserine Ref.12 | ||||||||||
| Modified residue | 522 | 1 | Phosphoserine Ref.11 Ref.12 Ref.13 | ||||||||||
| Modified residue | 529 | 1 | Phosphoserine Ref.5 Ref.11 Ref.12 | ||||||||||
| Modified residue | 588 | 1 | Phosphothreonine Ref.6 | ||||||||||
| Modified residue | 614 | 1 | Phosphoserine Ref.11 | ||||||||||
| Modified residue | 619 | 1 | Phosphoserine Ref.7 Ref.11 Ref.12 | ||||||||||
| Modified residue | 633 | 1 | Phosphoserine Ref.7 | ||||||||||
| Modified residue | 687 | 1 | Phosphoserine Ref.8 Ref.11 | ||||||||||
| Modified residue | 718 | 1 | N6-acetyllysine Ref.14 | ||||||||||
| Modified residue | 954 | 1 | N6-acetyllysine Ref.14 | ||||||||||
| Modified residue | 1457 | 1 | Phosphoserine Ref.11 | ||||||||||
| Modified residue | 1463 | 1 | Phosphoserine Ref.11 Ref.12 Ref.13 | ||||||||||
Natural variations | |||||||||||||
| Natural variant | 90 | 1 | D → N. Corresponds to variant rs16879902 [ dbSNP | Ensembl ]. | VAR_046554 | |||||||||
| Natural variant | 248 | 1 | I → V. Corresponds to variant rs2228375 [ dbSNP | Ensembl ]. | VAR_046555 | |||||||||
| Natural variant | 402 | 1 | N → K. Corresponds to variant rs6906499 [ dbSNP | Ensembl ]. | VAR_046556 | |||||||||
| Natural variant | 821 | 1 | P → L. Corresponds to variant rs6905654 [ dbSNP | Ensembl ]. | VAR_046557 | |||||||||
| Natural variant | 827 | 1 | A → T. Corresponds to variant rs2274136 [ dbSNP | Ensembl ]. | VAR_046558 | |||||||||
| Natural variant | 1388 | 1 | T → A. Corresponds to variant rs45475293 [ dbSNP | Ensembl ]. | VAR_046559 | |||||||||
Experimental info | |||||||||||||
| Sequence conflict | 454 – 455 | 2 | TR → HA in CAA80982. Ref.1 | ||||||||||
Secondary structure | |||||||||||||
Helix Strand Turn | |||||||||||||
| Beta strand | 729 – 731 | 3 | |||||||||||
| Beta strand | 743 – 745 | 3 | |||||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Sequence analysis of a cDNA encoding a human nuclear pore complex protein, hnup153." McMorrow I., Bastos R., Horton H., Burke B. Biochim. Biophys. Acta 1217:219-223(1994) [PubMed: 8110839] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA]. |
| [2] | "The DNA sequence and analysis of human chromosome 6." Mungall A.J., Palmer S.A., Sims S.K., Edwards C.A., Ashurst J.L., Wilming L., Jones M.C., Horton R., Hunt S.E., Scott C.E., Gilbert J.G.R., Clamp M.E., Bethel G., Milne S., Ainscough R., Almeida J.P., Ambrose K.D., Andrews T.D. Beck S.Nature 425:805-811(2003) [PubMed: 14574404] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [3] | Bienvenut W.V., Dozynkiewicz M., Norman J.C. Submitted (MAR-2009) to UniProtKB Cited for: PROTEIN SEQUENCE OF 2-17; 251-263; 295-309; 367-379; 706-718 AND 1046-1056, CLEAVAGE OF INITIATOR METHIONINE, ACETYLATION AT ALA-2, MASS SPECTROMETRY. Tissue: Ovarian carcinoma. |
| [4] | "Exportin-5, a novel karyopherin, mediates nuclear export of double-stranded RNA binding proteins." Brownawell A.M., Macara I.G. J. Cell Biol. 156:53-64(2002) [PubMed: 11777942] [Abstract] Cited for: INTERACTION WITH XPO5. |
| [5] | "Large-scale characterization of HeLa cell nuclear phosphoproteins." Beausoleil S.A., Jedrychowski M., Schwartz D., Elias J.E., Villen J., Li J., Cohn M.A., Cantley L.C., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 101:12130-12135(2004) [PubMed: 15302935] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-529, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [6] | "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks." Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P., Mann M. Cell 127:635-648(2006) [PubMed: 17081983] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-334; SER-338 AND THR-588, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [7] | "A probability-based approach for high-throughput protein phosphorylation analysis and site localization." Beausoleil S.A., Villen J., Gerber S.A., Rush J., Gygi S.P. Nat. Biotechnol. 24:1285-1292(2006) [PubMed: 16964243] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-209; SER-619 AND SER-633, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [8] | "Improved titanium dioxide enrichment of phosphopeptides from HeLa cells and high confident phosphopeptide identification by cross-validation of MS/MS and MS/MS/MS spectra." Yu L.-R., Zhu Z., Chan K.C., Issaq H.J., Dimitrov D.S., Veenstra T.D. J. Proteome Res. 6:4150-4162(2007) [PubMed: 17924679] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-687, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [9] | "Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient phosphoproteomic analysis." Cantin G.T., Yi W., Lu B., Park S.K., Xu T., Lee J.-D., Yates J.R. III J. Proteome Res. 7:1346-1351(2008) [PubMed: 18220336] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-257; THR-281; SER-334 AND SER-338, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [10] | "Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle." Daub H., Olsen J.V., Bairlein M., Gnad F., Oppermann F.S., Korner R., Greff Z., Keri G., Stemmann O., Mann M. Mol. Cell 31:438-448(2008) [PubMed: 18691976] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-209, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [11] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed: 18669648] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-209; SER-240; SER-257; SER-330; SER-334; SER-338; SER-343; THR-369; SER-516; SER-522; SER-529; SER-614; SER-619; SER-687; SER-1457 AND SER-1463, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [12] | "Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach." Gauci S., Helbig A.O., Slijper M., Krijgsveld J., Heck A.J., Mohammed S. Anal. Chem. 81:4493-4501(2009) [PubMed: 19413330] [Abstract] Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT ALA-2, PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-209; TYR-260; SER-320; SER-334; SER-338; SER-516; SER-518; SER-522; SER-529; SER-619 AND SER-1463, MASS SPECTROMETRY. Tissue: Embryonic kidney. |
| [13] | "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions." Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K. Sci. Signal. 2:RA46-RA46(2009) [PubMed: 19690332] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-209; SER-257; TYR-260; SER-320; SER-334; SER-338; SER-516; SER-522 AND SER-1463, MASS SPECTROMETRY. Tissue: Leukemic T-cell. |
| [14] | "Lysine acetylation targets protein complexes and co-regulates major cellular functions." Choudhary C., Kumar C., Gnad F., Nielsen M.L., Rehman M., Walther T., Olsen J.V., Mann M. Science 325:834-840(2009) [PubMed: 19608861] [Abstract] Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-384; LYS-718 AND LYS-954, MASS SPECTROMETRY. |
| [15] | "Integrase interacts with nucleoporin NUP153 to mediate the nuclear import of human immunodeficiency virus type 1." Woodward C.L., Prakobwanakit S., Mosessian S., Chow S.A. J. Virol. 83:6522-6533(2009) [PubMed: 19369352] [Abstract] Cited for: INTERACTION WITH HIV INTEGRASE. |
| [16] | "Nucleoporin 153 arrests the nuclear import of hepatitis B virus capsids in the nuclear basket." Schmitz A., Schwarz A., Foss M., Zhou L., Rabe B., Hoellenriegel J., Stoeber M., Pante N., Kann M. PLoS Pathog. 6:E1000741-E1000741(2010) [PubMed: 20126445] [Abstract] Cited for: INTERACTION WITH HEPATITIS B VIRUS CAPSID PROTEIN. |
| [17] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed: 21269460] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [18] | "Solution structure of the second and third ZF-RANBP domains from human nuclear pore complex protein NUP153." RIKEN structural genomics initiative (RSGI) Submitted (AUG-2007) to the PDB data bank Cited for: STRUCTURE BY NMR OF 722-822. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | Z25535 mRNA. Translation: CAA80982.1. AL138824, AL138724, AL157776 Genomic DNA. Translation: CAI12246.1. AL157776, AL138724, AL138824 Genomic DNA. Translation: CAI16393.1. AL138724, AL138824, AL157776 Genomic DNA. Translation: CAI40945.1. | ||||||||||||||||||||||||||||||
| IPI | IPI00292059. | ||||||||||||||||||||||||||||||
| PIR | S42718. | ||||||||||||||||||||||||||||||
| RefSeq | NP_005115.2. NM_005124.2. | ||||||||||||||||||||||||||||||
| UniGene | Hs.601591. Hs.718703. | ||||||||||||||||||||||||||||||
3D structure databases | |||||||||||||||||||||||||||||||
| PDBe RCSB PDB PDBj |
| ||||||||||||||||||||||||||||||
| ProteinModelPortal | P49790. | ||||||||||||||||||||||||||||||
| SMR | P49790. Positions 661-686, 722-761, 777-822, 855-890. | ||||||||||||||||||||||||||||||
| ModBase | Search... | ||||||||||||||||||||||||||||||
Protein-protein interaction databases | |||||||||||||||||||||||||||||||
| DIP | DIP-38185N. | ||||||||||||||||||||||||||||||
| IntAct | P49790. 13 interactions. | ||||||||||||||||||||||||||||||
| MINT | MINT-121422. | ||||||||||||||||||||||||||||||
| STRING | P49790. | ||||||||||||||||||||||||||||||
PTM databases | |||||||||||||||||||||||||||||||
| PhosphoSite | P49790. | ||||||||||||||||||||||||||||||
Polymorphism databases | |||||||||||||||||||||||||||||||
| DMDM | 206729891. | ||||||||||||||||||||||||||||||
Proteomic databases | |||||||||||||||||||||||||||||||
| PRIDE | P49790. | ||||||||||||||||||||||||||||||
Protocols and materials databases | |||||||||||||||||||||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||||||||||||||||||||
Genome annotation databases | |||||||||||||||||||||||||||||||
| Ensembl | ENST00000262077; ENSP00000262077; ENSG00000124789. | ||||||||||||||||||||||||||||||
| GeneID | 9972. | ||||||||||||||||||||||||||||||
| KEGG | hsa:9972. | ||||||||||||||||||||||||||||||
Organism-specific databases | |||||||||||||||||||||||||||||||
| CTD | 9972. | ||||||||||||||||||||||||||||||
| GeneCards | GC06M017559. | ||||||||||||||||||||||||||||||
| H-InvDB | HIX0032892. HIX0200901. | ||||||||||||||||||||||||||||||
| HGNC | HGNC:8062. NUP153. | ||||||||||||||||||||||||||||||
| HPA | HPA027896. HPA027897. HPA027898. | ||||||||||||||||||||||||||||||
| MIM | 603948. gene. | ||||||||||||||||||||||||||||||
| neXtProt | NX_P49790. | ||||||||||||||||||||||||||||||
| PharmGKB | PA31848. | ||||||||||||||||||||||||||||||
| GenAtlas | Search... | ||||||||||||||||||||||||||||||
Phylogenomic databases | |||||||||||||||||||||||||||||||
| eggNOG | prNOG04837. | ||||||||||||||||||||||||||||||
| HOVERGEN | HBG052679. | ||||||||||||||||||||||||||||||
| InParanoid | P49790. | ||||||||||||||||||||||||||||||
| OrthoDB | EOG4WDDD4. | ||||||||||||||||||||||||||||||
| PhylomeDB | P49790. | ||||||||||||||||||||||||||||||
Enzyme and pathway databases | |||||||||||||||||||||||||||||||
| Pathway_Interaction_DB | smad2_3pathway. Regulation of cytoplasmic and nuclear SMAD2/3 signaling. | ||||||||||||||||||||||||||||||
| Reactome | REACT_15518. Transmembrane transport of small molecules. REACT_474. Metabolism of carbohydrates. REACT_6185. HIV Infection. | ||||||||||||||||||||||||||||||
Gene expression databases | |||||||||||||||||||||||||||||||
| ArrayExpress | P49790. | ||||||||||||||||||||||||||||||
| Bgee | P49790. | ||||||||||||||||||||||||||||||
| CleanEx | HS_NUP153. | ||||||||||||||||||||||||||||||
| Genevestigator | P49790. | ||||||||||||||||||||||||||||||
| GermOnline | ENSG00000124789. Homo sapiens. | ||||||||||||||||||||||||||||||
Family and domain databases | |||||||||||||||||||||||||||||||
| InterPro | IPR013913. Nucleoporin_Nup153. IPR018892. Retro-transposon_transp_CS. IPR001876. Znf_RanBP2. [Graphical view] | ||||||||||||||||||||||||||||||
| KO | K14296. | ||||||||||||||||||||||||||||||
| Pfam | PF08604. Nup153. 1 hit. PF10599. Nup_retrotrp_bd. 1 hit. PF00641. zf-RanBP. 4 hits. [Graphical view] | ||||||||||||||||||||||||||||||
| SMART | SM00547. ZnF_RBZ. 4 hits. [Graphical view] | ||||||||||||||||||||||||||||||
| PROSITE | PS01358. ZF_RANBP2_1. 4 hits. PS50199. ZF_RANBP2_2. 4 hits. [Graphical view] | ||||||||||||||||||||||||||||||
| ProtoNet | Search... | ||||||||||||||||||||||||||||||
Other | |||||||||||||||||||||||||||||||
| NextBio | 37662. | ||||||||||||||||||||||||||||||
| PMAP-CutDB | P49790. | ||||||||||||||||||||||||||||||
| SOURCE | Search... | ||||||||||||||||||||||||||||||
Entry information
| Entry name | NU153_HUMAN | ||||||||
| Accession | Primary (citable) accession number: P49790 Secondary accession number(s): Q5T9I7 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 6 Human chromosome 6: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with