P49760 (CLK2_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 135.
History...
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Dual specificity protein kinase CLK2 EC=2.7.12.1 Alternative name(s): CDC-like kinase 2 | ||
| Gene names |
| ||
| Organism | Homo sapiens (Human) [Reference proteome] | ||
| Taxonomic identifier | 9606 [NCBI] | ||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 499 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Dual specificity kinase acting on both serine/threonine and tyrosine-containing substrates. Phosphorylates serine- and arginine-rich (SR) proteins of the spliceosomal complex. May be a constituent of a network of regulatory mechanisms that enable SR proteins to control RNA splicing and can cause redistribution of SR proteins from speckles to a diffuse nucleoplasmic distribution. Acts as a suppressor of hepatic gluconeogenesis and glucose output by repressing PPARGC1A transcriptional activity on gluconeogenic genes via its phosphorylation. Phosphorylates PPP2R5B thereby stimulating the assembly of PP2A phosphatase with the PPP2R5B-AKT1 complex leading to dephosphorylation of AKT1. Phosphorylates: PTPN1, SRSF1 and SRSF3. Regulates the alternative splicing of tissue factor (F3) pre-mRNA in endothelial cells. Ref.5 Ref.6 Ref.7 Ref.12 |
| Catalytic activity | ATP + a protein = ADP + a phosphoprotein. |
| Enzyme regulation | 5,6-dichloro-1-b-D-ribofuranosylbenzimidazole (DRB) inhibits autophosphorylation. TG003 inhibits its kinase activity and affects the regulation of alternative splicing mediated by phosphorylation of SR proteins By similarity. |
| Subunit structure | Interacts with RBMX. Interacts with AKT1 and UBL5. Ref.8 Ref.13 Ref.15 |
| Subcellular location | Isoform 1: Nucleus. Nucleus speckle. Note: Inhibition of phosphorylation at Ser-142 results in accumulation in the nuclear speckle By similarity. Ref.6 Isoform 2: Nucleus speckle. Note: Co-localizes with serine- and arginine-rich (SR) proteins in the nuclear speckles. Ref.6 |
| Tissue specificity | Endothelial cells. Ref.12 |
| Post-translational modification | Autophosphorylates on all three types of residues. Phosphorylation on Ser-34 and Thr-127 by AKT1 is induced by ionizing radiation or insulin. Phosphorylation plays a critical role in cell proliferation following low dose radiation and prevents cell death following high dose radiation. Phosphorylation at Thr-344 by PKB/AKT2 induces its kinase activity which is required for its stability. The phosphorylation status at Ser-142 influences its subnuclear localization; inhibition of phosphorylation at Ser-142 results in accumulation in the nuclear speckle. |
| Sequence similarities | Belongs to the protein kinase superfamily. CMGC Ser/Thr protein kinase family. Lammer subfamily. Contains 1 protein kinase domain. |
Ontologies
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| SNRNP70 | P08621 | 2 | EBI-750020,EBI-1049228 |
Alternative products
| This entry describes 3 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: P49760-1) Also known as: Long; This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: P49760-2) Also known as: Short; The sequence of this isoform differs from the canonical sequence as follows: 134-139: QHSSRR → MKSLAP 140-499: Missing. | ||||||
| Note: Lacks the kinase domain. May be produced at very low levels due to a premature stop codon in the mRNA, leading to nonsense-mediated mRNA decay. | ||||||
| Isoform 3 (identifier: P49760-3) The sequence of this isoform differs from the canonical sequence as follows: 134-134: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecule processing | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 499 | 499 | Dual specificity protein kinase CLK2 | PRO_0000085868 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Regions | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Domain | 163 – 479 | 317 | Protein kinase | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Nucleotide binding | 169 – 177 | 9 | ATP By similarity | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sites | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Active site | 290 | 1 | Proton acceptor By similarity | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Binding site | 193 | 1 | ATP By similarity | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Amino acid modifications | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Modified residue | 34 | 1 | Phosphoserine; by PKB/AKT1 Ref.15 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Modified residue | 98 | 1 | Phosphoserine; by autocatalysis | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Modified residue | 99 | 1 | Phosphotyrosine; by autocatalysis By similarity | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Modified residue | 127 | 1 | Phosphothreonine; by PKB/AKT1 Ref.15 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Modified residue | 142 | 1 | Phosphoserine; by autocatalysis Ref.10 Ref.11 Ref.14 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Modified residue | 153 | 1 | Phosphotyrosine Ref.14 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Modified residue | 344 | 1 | Phosphothreonine; by PKB/AKT2 By similarity | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Natural variations | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Alternative sequence | 134 – 139 | 6 | QHSSRR → MKSLAP in isoform 2. | VSP_004856 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Alternative sequence | 134 | 1 | Missing in isoform 3. | VSP_038744 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Alternative sequence | 140 – 499 | 360 | Missing in isoform 2. | VSP_004857 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Secondary structure | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Helix Strand Turn | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Turn | 146 – 149 | 4 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Turn | 160 – 162 | 3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 163 – 172 | 10 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 175 – 182 | 8 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Turn | 183 – 187 | 5 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 189 – 195 | 7 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 199 – 218 | 20 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 229 – 235 | 7 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 238 – 244 | 7 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 250 – 256 | 7 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Turn | 257 – 259 | 3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 264 – 283 | 20 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 293 – 295 | 3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 296 – 299 | 4 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 317 – 319 | 3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 323 – 325 | 3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Beta strand | 332 – 336 | 5 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 345 – 347 | 3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 350 – 353 | 4 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 361 – 376 | 16 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 386 – 397 | 12 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 402 – 407 | 6 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 411 – 413 | 3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 426 – 434 | 9 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 438 – 441 | 4 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 447 – 459 | 13 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Turn | 464 – 466 | 3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 470 – 475 | 6 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 477 – 479 | 3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Helix | 480 – 483 | 4 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Characterization by cDNA cloning of two new human protein kinases. Evidence by sequence comparison of a new family of mammalian protein kinases." Hanes J.J., der Kammer H., Klaudiny J.J., Scheit K.H. J. Mol. Biol. 244:665-672(1994) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1 AND 2). |
| [2] | "Identification of three additional genes contiguous to the glucocerebrosidase locus on chromosome 1q21: implications for Gaucher disease." Winfield S.L., Tayebi N., Martin B.M., Ginns E.I., Sidransky E. Genome Res. 7:1020-1026(1997) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] (ISOFORM 1). |
| [3] | "The DNA sequence and biological annotation of human chromosome 1." Gregory S.G., Barlow K.F., McLay K.E., Kaul R., Swarbreck D., Dunham A., Scott C.E., Howe K.L., Woodfine K., Spencer C.C.A., Jones M.C., Gillson C., Searle S., Zhou Y., Kokocinski F., McDonald L., Evans R., Phillips K. Bentley D.R.Nature 441:315-321(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [4] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 3). Tissue: Lung and Ovary. |
| [5] | "Activity and autophosphorylation of LAMMER protein kinases." Lee K., Du C., Horn M., Rabinow L. J. Biol. Chem. 271:27299-27303(1996) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION. |
| [6] | "The Clk2 and Clk3 dual-specificity protein kinases regulate the intranuclear distribution of SR proteins and influence pre-mRNA splicing." Duncan P.I., Stojdl D.F., Marius R.M., Scheit K.H., Bell J.C. Exp. Cell Res. 241:300-308(1998) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, SUBCELLULAR LOCATION, PHOSPHORYLATION. |
| [7] | "The CLK family kinases, CLK1 and CLK2, phosphorylate and activate the tyrosine phosphatase, PTP-1B." Moeslein F.M., Myers M.P., Landreth G.E. J. Biol. Chem. 274:26697-26704(1999) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION. |
| [8] | "Beacon interacts with cdc2/cdc28-like kinases." Kantham L., Kerr-Bayles L., Godde N., Quick M., Webb R., Sunderland T., Bond J., Walder K., Augert G., Collier G. Biochem. Biophys. Res. Commun. 304:125-129(2003) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH UBL5. |
| [9] | "An unappreciated role for RNA surveillance." Hillman R.T., Green R.E., Brenner S.E. Genome Biol. 5:R8.1-R8.16(2004) [PubMed] [Europe PMC] [Abstract] Cited for: SPLICE ISOFORM(S) THAT ARE POTENTIAL NMD TARGET(S). |
| [10] | "Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle." Daub H., Olsen J.V., Bairlein M., Gnad F., Oppermann F.S., Korner R., Greff Z., Keri G., Stemmann O., Mann M. Mol. Cell 31:438-448(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-142, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [11] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-142, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [12] | "Cdc2-like kinases and DNA topoisomerase I regulate alternative splicing of tissue factor in human endothelial cells." Eisenreich A., Bogdanov V.Y., Zakrzewicz A., Pries A., Antoniak S., Poller W., Schultheiss H.P., Rauch U. Circ. Res. 104:589-599(2009) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, ALTERNATIVE SPLICING, TISSUE SPECIFICITY. |
| [13] | "Heterogeneous nuclear ribonucleoprotein G regulates splice site selection by binding to CC(A/C)-rich regions in pre-mRNA." Heinrich B., Zhang Z., Raitskin O., Hiller M., Benderska N., Hartmann A.M., Bracco L., Elliott D., Ben-Ari S., Soreq H., Sperling J., Sperling R., Stamm S. J. Biol. Chem. 284:14303-14315(2009) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH RBMX. |
| [14] | "Large-scale proteomics analysis of the human kinome." Oppermann F.S., Gnad F., Olsen J.V., Hornberger R., Greff Z., Keri G., Mann M., Daub H. Mol. Cell. Proteomics 8:1751-1764(2009) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-142 AND TYR-153, MASS SPECTROMETRY. |
| [15] | "Phosphorylation of CLK2 at serine 34 and threonine 127 by AKT controls cell survival after ionizing radiation." Nam S.Y., Seo H.H., Park H.S., An S., Kim J.Y., Yang K.H., Kim C.S., Jeong M., Jin Y.W. J. Biol. Chem. 285:31157-31163(2010) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION AT SER-34 AND THR-127, INTERACTION WITH AKT1. |
| [16] | "Structure of human cdc2-like kinase 2 (clk2)." Structural genomics consortium (SGC) Submitted (AUG-2010) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (2.89 ANGSTROMS) OF 135-496. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EMBL GenBank DDBJ | L29218 mRNA. Translation: AAA61482.1. L29216 mRNA. Translation: AAA61481.1. AF023268 Genomic DNA. Translation: AAC51817.1. AL713999 Genomic DNA. Translation: CAI95098.1. BC014067 mRNA. Translation: AAH14067.1. BC053603 mRNA. Translation: AAH53603.1. | ||||||||||||
| IPI | IPI00028071. IPI00643082. IPI00937288. | ||||||||||||
| PIR | S53637. S53638. | ||||||||||||
| RefSeq | NP_003984.2. NM_003993.2. | ||||||||||||
| UniGene | Hs.73986. | ||||||||||||
3D structure databases | |||||||||||||
| PDBe RCSB PDB PDBj |
| ||||||||||||
| ProteinModelPortal | P49760. | ||||||||||||
| ModBase | Search... | ||||||||||||
Protein-protein interaction databases | |||||||||||||
| IntAct | P49760. 4 interactions. | ||||||||||||
| MINT | MINT-1683264. | ||||||||||||
| STRING | 9606.ENSP00000354856. | ||||||||||||
PTM databases | |||||||||||||
| PhosphoSite | P49760. | ||||||||||||
Polymorphism databases | |||||||||||||
| DMDM | 1705919. | ||||||||||||
Proteomic databases | |||||||||||||
| PaxDb | P49760. | ||||||||||||
| PRIDE | P49760. | ||||||||||||
Protocols and materials databases | |||||||||||||
| DNASU | 1196. | ||||||||||||
| StructuralBiologyKnowledgebase | Search... | ||||||||||||
Genome annotation databases | |||||||||||||
| Ensembl | ENST00000361168; ENSP00000354856; ENSG00000176444. ENST00000368361; ENSP00000357345; ENSG00000176444. ENST00000536801; ENSP00000441023; ENSG00000176444. ENST00000572269; ENSP00000459461; ENSG00000261893. ENST00000574445; ENSP00000460443; ENSG00000261893. | ||||||||||||
| GeneID | 1196. | ||||||||||||
| KEGG | hsa:1196. | ||||||||||||
| UCSC | uc001fjw.3. human. uc001fjx.3. human. | ||||||||||||
Organism-specific databases | |||||||||||||
| CTD | 1196. | ||||||||||||
| GeneCards | GC01M155232. | ||||||||||||
| H-InvDB | HIX0001112. | ||||||||||||
| HGNC | HGNC:2069. CLK2. | ||||||||||||
| HPA | HPA055366. | ||||||||||||
| MIM | 602989. gene. | ||||||||||||
| neXtProt | NX_P49760. | ||||||||||||
| PharmGKB | PA26595. | ||||||||||||
| GenAtlas | Search... | ||||||||||||
Phylogenomic databases | |||||||||||||
| eggNOG | COG0515. | ||||||||||||
| HOGENOM | HOG000203417. | ||||||||||||
| HOVERGEN | HBG107720. | ||||||||||||
| InParanoid | P49760. | ||||||||||||
| KO | K08823. | ||||||||||||
| OMA | RYRSRKH. | ||||||||||||
| OrthoDB | EOG46DM2S. | ||||||||||||
Enzyme and pathway databases | |||||||||||||
| BRENDA | 2.7.12.1. 2681. | ||||||||||||
Gene expression databases | |||||||||||||
| ArrayExpress | P49760. | ||||||||||||
| Bgee | P49760. | ||||||||||||
| CleanEx | HS_CLK2. | ||||||||||||
| Genevestigator | P49760. | ||||||||||||
| GermOnline | ENSG00000176444. Homo sapiens. | ||||||||||||
Family and domain databases | |||||||||||||
| InterPro | IPR011009. Kinase-like_dom. IPR000719. Prot_kinase_cat_dom. IPR017441. Protein_kinase_ATP_BS. IPR002290. Ser/Thr_dual-sp_kinase_dom. IPR008271. Ser/Thr_kinase_AS. [Graphical view] | ||||||||||||
| Pfam | PF00069. Pkinase. 1 hit. [Graphical view] | ||||||||||||
| SMART | SM00220. S_TKc. 1 hit. [Graphical view] | ||||||||||||
| SUPFAM | SSF56112. Kinase_like. 1 hit. | ||||||||||||
| PROSITE | PS00107. PROTEIN_KINASE_ATP. 1 hit. PS50011. PROTEIN_KINASE_DOM. 1 hit. PS00108. PROTEIN_KINASE_ST. 1 hit. [Graphical view] | ||||||||||||
| ProtoNet | Search... | ||||||||||||
Other | |||||||||||||
| BindingDB | P49760. | ||||||||||||
| ChEMBL | CHEMBL4225. | ||||||||||||
| ChiTaRS | CLK2. human. | ||||||||||||
| EvolutionaryTrace | P49760. | ||||||||||||
| GenomeRNAi | 1196. | ||||||||||||
| NextBio | 4940. | ||||||||||||
| SOURCE | Search... | ||||||||||||
Entry information
| Entry name | CLK2_HUMAN | ||||||||
| Accession | Primary (citable) accession number: P49760 Secondary accession number(s): B1AVS9, B5MBX6, Q96CQ0 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human and mouse protein kinases Human and mouse protein kinases: classification and index |
| Human chromosome 1 Human chromosome 1: entries, gene names and cross-references to MIM |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| PDB cross-references Index of Protein Data Bank (PDB) cross-references |
| SIMILARITY comments Index of protein domains and families |

Clusters with
