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Protein

60S ribosomal protein L23

Gene

RPL23A

more
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-ATH-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-ATH-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-ATH-72689. Formation of a pool of free 40S subunits.
R-ATH-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-ATH-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-ATH-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L23
Alternative name(s):
Protein EMBRYO DEFECTIVE 2171
Gene namesi
Name:RPL23A
Ordered Locus Names:At1g04480
ORF Names:F19P19.5
AND
Name:RPL23B
Ordered Locus Names:At2g33370
ORF Names:F4P9.14
AND
Name:RPL23C
Synonyms:EMB2171
Ordered Locus Names:At3g04400
ORF Names:T27C4.4
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componentsi: Chromosome 1, Chromosome 2, Chromosome 3

Organism-specific databases

TAIRiAT1G04480.
AT2G33370.
AT3G04400.

Subcellular locationi

GO - Cellular componenti

  • cytosolic large ribosomal subunit Source: TAIR
  • nucleolus Source: TAIR
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 14014060S ribosomal protein L23PRO_0000128625Add
BLAST

Proteomic databases

PaxDbiP49690.
PRIDEiP49690.

Expressioni

Gene expression databases

ExpressionAtlasiP49690. baseline and differential.
GenevisibleiP49690. AT.

Interactioni

Protein-protein interaction databases

BioGridi24746. 3 interactions.
STRINGi3702.AT3G04400.1.

Structurei

3D structure databases

ProteinModelPortaliP49690.
SMRiP49690. Positions 11-140.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L14P family.Curated

Phylogenomic databases

eggNOGiKOG0901. Eukaryota.
COG0093. LUCA.
InParanoidiP49690.
KOiK02894.
OMAiWIAFEDN.
OrthoDBiEOG09360R54.
PhylomeDBiP49690.

Family and domain databases

Gene3Di2.40.150.20. 1 hit.
HAMAPiMF_01367. Ribosomal_L14. 1 hit.
InterProiIPR000218. Ribosomal_L14P.
IPR019972. Ribosomal_L14P_CS.
[Graphical view]
PANTHERiPTHR11761. PTHR11761. 1 hit.
PfamiPF00238. Ribosomal_L14. 1 hit.
[Graphical view]
SMARTiSM01374. Ribosomal_L14. 1 hit.
[Graphical view]
SUPFAMiSSF50193. SSF50193. 1 hit.
PROSITEiPS00049. RIBOSOMAL_L14. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

This entry describes 1 isoform i produced by alternative splicing. AlignAdd to basket

Note: A number of isoforms are produced. According to EST sequences.
Isoform 1 (identifier: P49690-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MSKRGRGGTS GNKFRMSLGL PVAATVNCAD NTGAKNLYII SVKGIKGRLN
60 70 80 90 100
RLPSACVGDM VMATVKKGKP DLRKKVLPAV IVRQRKPWRR KDGVFMYFED
110 120 130 140
NAGVIVNPKG EMKGSAITGP IGKECADLWP RIASAANAIV
Length:140
Mass (Da):15,027
Last modified:December 8, 2000 - v3
Checksum:iAAB8DF0E2756A369
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti52 – 521L → F in CAA79169 (PubMed:8281187).Curated
Sequence conflicti55 – 551A → P in CAA79169 (PubMed:8281187).Curated
Sequence conflicti66 – 661K → N in CAA79169 (PubMed:8281187).Curated
Sequence conflicti83 – 831R → S in CAA79169 (PubMed:8281187).Curated
Sequence conflicti111 – 1111E → D in AAM67199 (Ref. 6) Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC000104 Genomic DNA. No translation available.
AC002332 Genomic DNA. Translation: AAB80655.1.
AC022287 Genomic DNA. Translation: AAF63771.1.
CP002684 Genomic DNA. Translation: AEE27702.1.
CP002685 Genomic DNA. Translation: AEC08824.1.
CP002686 Genomic DNA. Translation: AEE74076.1.
AY042843 mRNA. Translation: AAK68783.1.
AY054508 mRNA. Translation: AAK96699.1.
AY072481 mRNA. Translation: AAL66896.1.
AY081677 mRNA. Translation: AAM10239.1.
AY086853 mRNA. Translation: AAM63901.1.
AY088227 mRNA. Translation: AAM65768.1.
AY088893 mRNA. Translation: AAM67199.1.
Z18477 mRNA. Translation: CAA79199.1.
Z18371 mRNA. Translation: CAA79169.1.
PIRiF84744.
RefSeqiNP_180895.1. NM_128897.3. [P49690-1]
NP_187090.1. NM_111311.4. [P49690-1]
NP_563707.1. NM_100327.4. [P49690-1]
UniGeneiAt.11034.
At.20792.
At.22254.
At.28146.

Genome annotation databases

EnsemblPlantsiAT1G04480.1; AT1G04480.1; AT1G04480. [P49690-1]
AT2G33370.1; AT2G33370.1; AT2G33370. [P49690-1]
AT3G04400.1; AT3G04400.1; AT3G04400. [P49690-1]
GeneIDi817900.
819595.
839511.
KEGGiath:AT1G04480.
ath:AT2G33370.
ath:AT3G04400.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC000104 Genomic DNA. No translation available.
AC002332 Genomic DNA. Translation: AAB80655.1.
AC022287 Genomic DNA. Translation: AAF63771.1.
CP002684 Genomic DNA. Translation: AEE27702.1.
CP002685 Genomic DNA. Translation: AEC08824.1.
CP002686 Genomic DNA. Translation: AEE74076.1.
AY042843 mRNA. Translation: AAK68783.1.
AY054508 mRNA. Translation: AAK96699.1.
AY072481 mRNA. Translation: AAL66896.1.
AY081677 mRNA. Translation: AAM10239.1.
AY086853 mRNA. Translation: AAM63901.1.
AY088227 mRNA. Translation: AAM65768.1.
AY088893 mRNA. Translation: AAM67199.1.
Z18477 mRNA. Translation: CAA79199.1.
Z18371 mRNA. Translation: CAA79169.1.
PIRiF84744.
RefSeqiNP_180895.1. NM_128897.3. [P49690-1]
NP_187090.1. NM_111311.4. [P49690-1]
NP_563707.1. NM_100327.4. [P49690-1]
UniGeneiAt.11034.
At.20792.
At.22254.
At.28146.

3D structure databases

ProteinModelPortaliP49690.
SMRiP49690. Positions 11-140.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi24746. 3 interactions.
STRINGi3702.AT3G04400.1.

Proteomic databases

PaxDbiP49690.
PRIDEiP49690.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G04480.1; AT1G04480.1; AT1G04480. [P49690-1]
AT2G33370.1; AT2G33370.1; AT2G33370. [P49690-1]
AT3G04400.1; AT3G04400.1; AT3G04400. [P49690-1]
GeneIDi817900.
819595.
839511.
KEGGiath:AT1G04480.
ath:AT2G33370.
ath:AT3G04400.

Organism-specific databases

TAIRiAT1G04480.
AT2G33370.
AT3G04400.

Phylogenomic databases

eggNOGiKOG0901. Eukaryota.
COG0093. LUCA.
InParanoidiP49690.
KOiK02894.
OMAiWIAFEDN.
OrthoDBiEOG09360R54.
PhylomeDBiP49690.

Enzyme and pathway databases

ReactomeiR-ATH-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-ATH-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-ATH-72689. Formation of a pool of free 40S subunits.
R-ATH-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-ATH-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-ATH-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

PROiP49690.

Gene expression databases

ExpressionAtlasiP49690. baseline and differential.
GenevisibleiP49690. AT.

Family and domain databases

Gene3Di2.40.150.20. 1 hit.
HAMAPiMF_01367. Ribosomal_L14. 1 hit.
InterProiIPR000218. Ribosomal_L14P.
IPR019972. Ribosomal_L14P_CS.
[Graphical view]
PANTHERiPTHR11761. PTHR11761. 1 hit.
PfamiPF00238. Ribosomal_L14. 1 hit.
[Graphical view]
SMARTiSM01374. Ribosomal_L14. 1 hit.
[Graphical view]
SUPFAMiSSF50193. SSF50193. 1 hit.
PROSITEiPS00049. RIBOSOMAL_L14. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL23_ARATH
AccessioniPrimary (citable) accession number: P49690
Secondary accession number(s): Q8L8P0, Q9SDB5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: December 8, 2000
Last modified: September 7, 2016
This is version 117 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.