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Protein

40S ribosomal protein S2-3

Gene

RPS2C

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • mRNA binding Source: TAIR
  • structural constituent of ribosome Source: GO_Central

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-ATH-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-ATH-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-ATH-6791226. Major pathway of rRNA processing in the nucleolus and cytosol.
R-ATH-72689. Formation of a pool of free 40S subunits.
R-ATH-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-ATH-72702. Ribosomal scanning and start codon recognition.
R-ATH-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-ATH-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-ATH-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S2-3
Gene namesi
Name:RPS2C
Ordered Locus Names:At2g41840
ORF Names:T11A07.6
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

TAIRilocus:2054406. AT2G41840.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: TAIR
  • cytosolic ribosome Source: TAIR
  • cytosolic small ribosomal subunit Source: TAIR
  • membrane Source: TAIR
  • nucleolus Source: TAIR
  • plasmodesma Source: TAIR

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001316821 – 28540S ribosomal protein S2-3Add BLAST285

Proteomic databases

PaxDbiP49688.
PRIDEiP49688.

PTM databases

iPTMnetiP49688.

Expressioni

Gene expression databases

GenevisibleiP49688. AT.

Interactioni

Protein-protein interaction databases

BioGridi4121. 8 interactors.
IntActiP49688. 2 interactors.
STRINGi3702.AT2G41840.1.

Structurei

3D structure databases

ProteinModelPortaliP49688.
SMRiP49688.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini96 – 159S5 DRBMPROSITE-ProRule annotationAdd BLAST64

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG0877. Eukaryota.
COG0098. LUCA.
HOGENOMiHOG000072596.
InParanoidiP49688.
KOiK02981.
OMAiKEADCDA.
OrthoDBiEOG09360L08.
PhylomeDBiP49688.

Family and domain databases

Gene3Di3.30.230.10. 1 hit.
InterProiView protein in InterPro
IPR000851. Ribosomal_S5.
IPR005324. Ribosomal_S5_C.
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
IPR005711. Ribosomal_S5_euk/arc.
IPR013810. Ribosomal_S5_N.
IPR018192. Ribosomal_S5_N_CS.
PANTHERiPTHR13718. PTHR13718. 1 hit.
PfamiView protein in Pfam
PF00333. Ribosomal_S5. 1 hit.
PF03719. Ribosomal_S5_C. 1 hit.
SUPFAMiSSF54211. SSF54211. 1 hit.
TIGRFAMsiTIGR01020. uS5_euk_arch. 1 hit.
PROSITEiView protein in PROSITE
PS00585. RIBOSOMAL_S5. 1 hit.
PS50881. S5_DSRBD. 1 hit.

Sequencei

Sequence statusi: Complete.

P49688-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAERGGERGV ERGGERGDFG RGFGGRGGRG DRGGRGRGGR GGRRGGRASE
60 70 80 90 100
EEKWVPVTKL GRLVAAGHIK QIEQIYLHSL PVKEYQIIDM LIGPTLKDEV
110 120 130 140 150
MKIMPVQKQT RAGQRTRFKA FVVVGDGNGH VGLGVKCSKE VATAIRGAII
160 170 180 190 200
LAKLSVVPVR RGYWGNKIGK PHTVPCKVTG KCGSVTVRMV PAPRGSGIVA
210 220 230 240 250
ARVPKKVLQF AGIDDVFTSS RGSTKTLGNF VKATFDCLQK TYGFLTPEFW
260 270 280
KETRFSRSPY QEHTDFLASK ALSTSKPDPV VEDQA
Length:285
Mass (Da):30,879
Last modified:December 15, 1998 - v2
Checksum:i68C8C98091D4995B
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti268 – 269AS → ST in CAA79017 (PubMed:8281187).Curated2
Sequence conflicti272 – 281LSTSKPDPVV → VSATKVITEG in CAA79017 (PubMed:8281187).Curated10

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC002339 Genomic DNA. Translation: AAC02764.1.
CP002685 Genomic DNA. Translation: AEC10039.1.
AY048250 mRNA. Translation: AAK82512.1.
AY133561 mRNA. Translation: AAM91391.1.
Z17622 mRNA. Translation: CAA79017.1.
PIRiG84846.
RefSeqiNP_181715.1. NM_129748.4.
UniGeneiAt.12251.
At.67324.

Genome annotation databases

EnsemblPlantsiAT2G41840.1; AT2G41840.1; AT2G41840.
GeneIDi818784.
GrameneiAT2G41840.1; AT2G41840.1; AT2G41840.
KEGGiath:AT2G41840.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC002339 Genomic DNA. Translation: AAC02764.1.
CP002685 Genomic DNA. Translation: AEC10039.1.
AY048250 mRNA. Translation: AAK82512.1.
AY133561 mRNA. Translation: AAM91391.1.
Z17622 mRNA. Translation: CAA79017.1.
PIRiG84846.
RefSeqiNP_181715.1. NM_129748.4.
UniGeneiAt.12251.
At.67324.

3D structure databases

ProteinModelPortaliP49688.
SMRiP49688.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4121. 8 interactors.
IntActiP49688. 2 interactors.
STRINGi3702.AT2G41840.1.

PTM databases

iPTMnetiP49688.

Proteomic databases

PaxDbiP49688.
PRIDEiP49688.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT2G41840.1; AT2G41840.1; AT2G41840.
GeneIDi818784.
GrameneiAT2G41840.1; AT2G41840.1; AT2G41840.
KEGGiath:AT2G41840.

Organism-specific databases

AraportiAT2G41840.
TAIRilocus:2054406. AT2G41840.

Phylogenomic databases

eggNOGiKOG0877. Eukaryota.
COG0098. LUCA.
HOGENOMiHOG000072596.
InParanoidiP49688.
KOiK02981.
OMAiKEADCDA.
OrthoDBiEOG09360L08.
PhylomeDBiP49688.

Enzyme and pathway databases

ReactomeiR-ATH-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-ATH-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-ATH-6791226. Major pathway of rRNA processing in the nucleolus and cytosol.
R-ATH-72689. Formation of a pool of free 40S subunits.
R-ATH-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-ATH-72702. Ribosomal scanning and start codon recognition.
R-ATH-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-ATH-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-ATH-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

PROiPR:P49688.

Gene expression databases

GenevisibleiP49688. AT.

Family and domain databases

Gene3Di3.30.230.10. 1 hit.
InterProiView protein in InterPro
IPR000851. Ribosomal_S5.
IPR005324. Ribosomal_S5_C.
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
IPR005711. Ribosomal_S5_euk/arc.
IPR013810. Ribosomal_S5_N.
IPR018192. Ribosomal_S5_N_CS.
PANTHERiPTHR13718. PTHR13718. 1 hit.
PfamiView protein in Pfam
PF00333. Ribosomal_S5. 1 hit.
PF03719. Ribosomal_S5_C. 1 hit.
SUPFAMiSSF54211. SSF54211. 1 hit.
TIGRFAMsiTIGR01020. uS5_euk_arch. 1 hit.
PROSITEiView protein in PROSITE
PS00585. RIBOSOMAL_S5. 1 hit.
PS50881. S5_DSRBD. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRS23_ARATH
AccessioniPrimary (citable) accession number: P49688
Secondary accession number(s): O22936
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: December 15, 1998
Last modified: April 12, 2017
This is version 134 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.