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Protein

40S ribosomal protein S2-3

Gene

RPS2C

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • mRNA binding Source: TAIR
  • structural constituent of ribosome Source: CAFA

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-ATH-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-ATH-1799339 SRP-dependent cotranslational protein targeting to membrane
R-ATH-6791226 Major pathway of rRNA processing in the nucleolus and cytosol
R-ATH-72689 Formation of a pool of free 40S subunits
R-ATH-72695 Formation of the ternary complex, and subsequently, the 43S complex
R-ATH-72702 Ribosomal scanning and start codon recognition
R-ATH-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-ATH-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-ATH-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S2-3
Gene namesi
Name:RPS2C
Ordered Locus Names:At2g41840
ORF Names:T11A07.6
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

AraportiAT2G41840
TAIRilocus:2054406 AT2G41840

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001316821 – 28540S ribosomal protein S2-3Add BLAST285

Proteomic databases

PaxDbiP49688
PRIDEiP49688

PTM databases

iPTMnetiP49688

Expressioni

Gene expression databases

ExpressionAtlasiP49688 baseline and differential
GenevisibleiP49688 AT

Interactioni

Protein-protein interaction databases

BioGridi41218 interactors.
IntActiP49688 2 interactors.
STRINGi3702.AT2G41840.1

Structurei

3D structure databases

ProteinModelPortaliP49688
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini96 – 159S5 DRBMPROSITE-ProRule annotationAdd BLAST64

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG0877 Eukaryota
COG0098 LUCA
HOGENOMiHOG000072596
InParanoidiP49688
KOiK02981
OMAiFWTETRF
OrthoDBiEOG09360L08
PhylomeDBiP49688

Family and domain databases

Gene3Di3.30.230.101 hit
InterProiView protein in InterPro
IPR000851 Ribosomal_S5
IPR005324 Ribosomal_S5_C
IPR020568 Ribosomal_S5_D2-typ_fold
IPR014721 Ribosomal_S5_D2-typ_fold_subgr
IPR005711 Ribosomal_S5_euk/arc
IPR013810 Ribosomal_S5_N
IPR018192 Ribosomal_S5_N_CS
PANTHERiPTHR13718 PTHR13718, 1 hit
PfamiView protein in Pfam
PF00333 Ribosomal_S5, 1 hit
PF03719 Ribosomal_S5_C, 1 hit
SUPFAMiSSF54211 SSF54211, 1 hit
TIGRFAMsiTIGR01020 uS5_euk_arch, 1 hit
PROSITEiView protein in PROSITE
PS00585 RIBOSOMAL_S5, 1 hit
PS50881 S5_DSRBD, 1 hit

Sequencei

Sequence statusi: Complete.

P49688-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAERGGERGV ERGGERGDFG RGFGGRGGRG DRGGRGRGGR GGRRGGRASE
60 70 80 90 100
EEKWVPVTKL GRLVAAGHIK QIEQIYLHSL PVKEYQIIDM LIGPTLKDEV
110 120 130 140 150
MKIMPVQKQT RAGQRTRFKA FVVVGDGNGH VGLGVKCSKE VATAIRGAII
160 170 180 190 200
LAKLSVVPVR RGYWGNKIGK PHTVPCKVTG KCGSVTVRMV PAPRGSGIVA
210 220 230 240 250
ARVPKKVLQF AGIDDVFTSS RGSTKTLGNF VKATFDCLQK TYGFLTPEFW
260 270 280
KETRFSRSPY QEHTDFLASK ALSTSKPDPV VEDQA
Length:285
Mass (Da):30,879
Last modified:December 15, 1998 - v2
Checksum:i68C8C98091D4995B
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti268 – 269AS → ST in CAA79017 (PubMed:8281187).Curated2
Sequence conflicti272 – 281LSTSKPDPVV → VSATKVITEG in CAA79017 (PubMed:8281187).Curated10

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC002339 Genomic DNA Translation: AAC02764.1
CP002685 Genomic DNA Translation: AEC10039.1
AY048250 mRNA Translation: AAK82512.1
AY133561 mRNA Translation: AAM91391.1
Z17622 mRNA Translation: CAA79017.1
PIRiG84846
RefSeqiNP_181715.1, NM_129748.4
UniGeneiAt.12251
At.67324

Genome annotation databases

EnsemblPlantsiAT2G41840.1; AT2G41840.1; AT2G41840
GeneIDi818784
GrameneiAT2G41840.1; AT2G41840.1; AT2G41840
KEGGiath:AT2G41840

Similar proteinsi

Entry informationi

Entry nameiRS23_ARATH
AccessioniPrimary (citable) accession number: P49688
Secondary accession number(s): O22936
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: December 15, 1998
Last modified: April 25, 2018
This is version 142 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome