Reviewed,
UniProtKB/Swiss-Prot P49454 (CENPF_HUMAN)
Last modified
June 16, 2009.
Version 95.
History...
Clusters with 100%,
90%,
50% identity |
Documents (5) |
Third-party data |
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Names and origin
| Protein names | Recommended name: Centromere protein F Alternative name(s): Kinetochore protein CENP-F Mitosin AH antigen | ||
| Gene names |
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| Organism | Homo sapiens (Human) | ||
| Taxonomic identifier | 9606 [NCBI] | ||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 3210 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is not processed. |
| Protein existence | Evidence at protein level. |
General annotation (Comments)
| Function | Required for kinetochore function and chromosome segregation in mitosis. Required for kinetochore localization of dynein, LIS1, NDE1 and NDEL1. Regulates recycling of the plasma membrane by acting as a link between recycling vesicles and the microtubule network though its association with STX4 and SNAP25. Acts as a potential inhibitor of pocket protein-mediated cellular processes during development by regulating the activity of RB proteins during cell division and proliferation. May play a regulatory or permissive role in the normal embryonic cardiomyocyte cell cycle and in promoting continued mitosis in transformed, abnormally dividing neonatal cardiomyocytes. Interaction with RB directs embryonic stem cells toward a cardiac lineage. Involved in the regulation of DNA synthesis and hence cell cycle progression, via its C-terminus. Has a potential role regulating skeletal myogenesis and in cell differentiation in embryogenesis. Involved in dendritic cell regulation of T-cell immunity against chlamydia. Ref.1 Ref.2 Ref.8 Ref.12 |
| Subunit structure | Interacts with and STX4 (via C-terminus) By similarity. Interacts (via N-terminus) with RBL1, RBL2 and SNAP25 By similarity. Self-associates. Interacts with CENP-E and BUBR1 (via C-terminus). Interacts (via C-terminus) with NDE1, NDEL1 and RB1. |
| Subcellular location | Cytoplasm › perinuclear region. Nucleus matrix. Kinetochore. Spindle. Note: Relocalizes to the kinetochore/centromere (coronal surface of the outer plate) and the spindle during mitosis. Observed in nucleus during interphase but not in the nucleolus. At metaphase becomes localized to areas including kinetochore and mitotic apparatus as well as cytoplasm. By telophase, is concentrated within the intracellular bridge at either side of the mid-body. Ref.1 Ref.2 Ref.8 Ref.12 Ref.4 Ref.5 Ref.6 |
| Developmental stage | Gradually accumulates during the cell cycle, reaching peak levels in G2 and M phase, and is rapidly degraded upon completion of mitosis. Ref.1 |
| Post-translational modification | Hyperphosphorylated during mitosis. Phosphorylated upon DNA damage, probably by ATM or ATR. Ref.9 Ref.10 Ref.11 Ref.13 Ref.14 Ref.15 Ref.16 Ref.17 |
| Sequence similarities | Belongs to the centromere protein F family. |
Ontologies
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 3210 | 3210 | Centromere protein F | PRO_0000089477 | |||||
Regions | |||||||||
| Repeat | 1435 – 1530 | 96 | 1-1 | ||||||
| Repeat | 1531 – 1626 | 96 | 1-2 | ||||||
| Repeat | 2207 – 2386 | 180 | 2-1 | ||||||
| Repeat | 2389 – 2568 | 180 | 2-2 | ||||||
| Region | 1 – 481 | 481 | Interaction with SNAP25 and required for localization to the cytoplasm By similarity | ||||||
| Region | 1435 – 1626 | 192 | 2 X 96 AA approximate tandem repeats | ||||||
| Region | 2122 – 2447 | 326 | Interaction with NDE1 and NDEL1 | ||||||
| Region | 2207 – 2568 | 362 | 2 X 177 AA tandem repeats | ||||||
| Region | 2488 – 3113 | 626 | Sufficient for centromere localization | ||||||
| Region | 2488 – 2925 | 438 | Sufficient for self-association | ||||||
| Region | 2927 – 3113 | 187 | Sufficient for nuclear localization | ||||||
| Coiled coil | 14 – 197 | 184 | Potential | ||||||
| Coiled coil | 273 – 769 | 497 | Potential | ||||||
| Coiled coil | 823 – 1328 | 506 | Potential | ||||||
| Coiled coil | 1642 – 1746 | 105 | Potential | ||||||
| Coiled coil | 1862 – 2987 | 1126 | Potential | ||||||
| Motif | 3015 – 3032 | 18 | Nuclear localization signal Potential | ||||||
Amino acid modifications | |||||||||
| Modified residue | 106 | 1 | Phosphoserine Ref.17 | ||||||
| Modified residue | 144 | 1 | Phosphothreonine Ref.17 | ||||||
| Modified residue | 268 | 1 | Phosphoserine Ref.14 | ||||||
| Modified residue | 274 | 1 | Phosphoserine Ref.14 | ||||||
| Modified residue | 276 | 1 | Phosphoserine Ref.14 | ||||||
| Modified residue | 769 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 821 | 1 | Phosphoserine Ref.11 | ||||||
| Modified residue | 834 | 1 | Phosphoserine Ref.17 | ||||||
| Modified residue | 1248 | 1 | Phosphoserine Ref.17 | ||||||
| Modified residue | 1255 | 1 | Phosphoserine Ref.15 | ||||||
| Modified residue | 1282 | 1 | Phosphoserine Ref.15 | ||||||
| Modified residue | 1315 | 1 | Phosphotyrosine Ref.13 | ||||||
| Modified residue | 1319 | 1 | Phosphothreonine Ref.13 | ||||||
| Modified residue | 1324 | 1 | Phosphoserine Ref.11 | ||||||
| Modified residue | 1747 | 1 | Phosphoserine Ref.10 Ref.11 Ref.17 | ||||||
| Modified residue | 1748 | 1 | Phosphoserine Ref.17 | ||||||
| Modified residue | 1750 | 1 | Phosphoserine Ref.10 Ref.11 Ref.17 | ||||||
| Modified residue | 1988 | 1 | Phosphoserine Ref.11 | ||||||
| Modified residue | 2512 | 1 | Phosphoserine Ref.17 | ||||||
| Modified residue | 2513 | 1 | Phosphoserine Ref.11 Ref.17 | ||||||
| Modified residue | 2638 | 1 | Phosphoserine Ref.15 | ||||||
| Modified residue | 2996 | 1 | Phosphoserine Ref.11 Ref.17 | ||||||
| Modified residue | 3007 | 1 | Phosphoserine Ref.11 Ref.17 | ||||||
| Modified residue | 3094 | 1 | Phosphoserine Ref.11 | ||||||
| Modified residue | 3119 | 1 | Phosphoserine Ref.10 Ref.11 Ref.13 Ref.17 | ||||||
| Modified residue | 3122 | 1 | Phosphoserine Ref.17 | ||||||
| Modified residue | 3150 | 1 | Phosphoserine Ref.9 Ref.13 Ref.16 Ref.17 | ||||||
| Modified residue | 3175 | 1 | Phosphoserine Ref.11 Ref.16 Ref.17 | ||||||
| Modified residue | 3179 | 1 | Phosphoserine Ref.11 Ref.17 | ||||||
| Lipidation | 3207 | 1 | S-farnesyl cysteine | ||||||
Natural variations | |||||||||
| Natural variant | 250 | 1 | Q → L: dbSNP rs1050065. Ref.1 | VAR_055049 | |||||
| Natural variant | 272 | 1 | D → G: dbSNP rs1050066. Ref.1 | VAR_055050 | |||||
| Natural variant | 300 | 1 | R → C: dbSNP rs17023281. | VAR_034712 | |||||
| Natural variant | 494 | 1 | H → Q: dbSNP rs2070065. | VAR_034713 | |||||
| Natural variant | 701 | 1 | M → V: dbSNP rs3795524. | VAR_034714 | |||||
| Natural variant | 754 | 1 | Q → E: dbSNP rs3795523. | VAR_034715 | |||||
| Natural variant | 815 | 1 | R → H: dbSNP rs3795522. | VAR_034716 | |||||
| Natural variant | 1018 | 1 | Y → D: dbSNP rs3795519. | VAR_034717 | |||||
| Natural variant | 1033 | 1 | G → R: dbSNP rs3795518. | VAR_034718 | |||||
| Natural variant | 1105 | 1 | T → I: dbSNP rs12067133. | VAR_034719 | |||||
| Natural variant | 1412 | 1 | L → S: dbSNP rs3795517. | VAR_034720 | |||||
| Natural variant | 1515 | 1 | A → T: dbSNP rs2666839. | VAR_034721 | |||||
| Natural variant | 1516 – 1611 | 96 | Missing | VAR_036701 | |||||
| Natural variant | 1539 | 1 | K → R: dbSNP rs3795514. | VAR_034722 | |||||
| Natural variant | 1635 | 1 | K → R: dbSNP rs3795514. | VAR_055637 | |||||
| Natural variant | 1864 | 1 | D → N: dbSNP rs3748692. | VAR_055638 | |||||
| Natural variant | 2011 | 1 | E → A: dbSNP rs3790647. | VAR_034723 | |||||
| Natural variant | 2107 | 1 | E → A: dbSNP rs3790647. | VAR_055639 | |||||
| Natural variant | 3202 | 1 | N → K: dbSNP rs7289. Ref.1 Ref.2 Ref.4 | VAR_014839 | |||||
Experimental info | |||||||||
| Sequence conflict | 16 | 1 | A → T in AAA82889. Ref.1 | ||||||
| Sequence conflict | 48 | 1 | L → P in AAA82889. Ref.1 | ||||||
| Sequence conflict | 48 | 1 | L → P in AAA82935. Ref.2 | ||||||
| Sequence conflict | 52 | 1 | K → T in AAA82889. Ref.1 | ||||||
| Sequence conflict | 52 | 1 | K → T in AAA82935. Ref.2 | ||||||
| Sequence conflict | 611 | 1 | Missing in AAA82935. Ref.2 | ||||||
| Sequence conflict | 1811 | 1 | V → L in AAA82935. Ref.2 | ||||||
| Sequence conflict | 2242 – 2243 | 2 | ER → DG in AAA86889. Ref.4 | ||||||
| Sequence conflict | 2335 | 1 | L → Q in AAA86889. Ref.4 | ||||||
| Sequence conflict | 2492 | 1 | N → D in AAA82889. Ref.1 | ||||||
| Sequence conflict | 2492 | 1 | N → D in AAA86889. Ref.4 | ||||||
| Sequence conflict | 2545 – 2561 | 17 | ELNER…QEACK → SSMREWQPCIMTKKPVS in AAA86889. Ref.4 | ||||||
| Sequence conflict | 3039 | 1 | R → G in AAA82889. Ref.1 | ||||||
| Sequence conflict | 3039 | 1 | R → G in AAA82935. Ref.2 | ||||||
| Sequence conflict | 3039 | 1 | R → G in AAA86889. Ref.4 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "CENP-F is a protein of the nuclear matrix that assembles onto kinetochores at late G2 and is rapidly degraded after mitosis." Liao H., Winkfein R.J., Mack G., Rattner J.B., Yen T.J. J. Cell Biol. 130:507-518(1995) [PubMed: 7542657] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, SUBCELLULAR LOCATION, DEVELOPMENTAL STAGE, VARIANTS LEU-250; GLY-272 AND LYS-3202. Tissue: Mammary carcinoma. |
| [2] | "Characterization of a novel 350-kilodalton nuclear phosphoprotein that is specifically involved in mitotic-phase progression." Zhu X., Mancini M.A., Chang K.-H., Liu C.-Y., Chen C.-F., Shan B., Jones D., Yang-Feng T.L., Lee W.-H. Mol. Cell. Biol. 15:5017-5029(1995) [PubMed: 7651420] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, INTERACTION WITH RB1, SUBCELLULAR LOCATION, VARIANTS 1516-VAL--VAL-1611 DEL AND LYS-3202. |
| [3] | "The DNA sequence and biological annotation of human chromosome 1." Gregory S.G., Barlow K.F., McLay K.E., Kaul R., Swarbreck D., Dunham A., Scott C.E., Howe K.L., Woodfine K., Spencer C.C.A., Jones M.C., Gillson C., Searle S., Zhou Y., Kokocinski F., McDonald L., Evans R., Phillips K. Bentley D.R.Nature 441:315-321(2006) [PubMed: 16710414] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [4] | "A novel cell-cycle-dependent 350-kDa nuclear protein: C-terminal domain sufficient for nuclear localization." Li Q., Ke Y., Kapp J.A., Fertig N., Medsger T.A. Jr., Joshi H.C. Biochem. Biophys. Res. Commun. 212:220-228(1995) [PubMed: 7612011] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 2194-3210, SUBCELLULAR LOCATION, NUCLEAR LOCALIZATION SIGNAL, VARIANT LYS-3202. |
| [5] | "The C-terminus of mitosin is essential for its nuclear localization, centromere/kinetochore targeting, and dimerization." Zhu X., Chang K.-H., He D., Mancini M.A., Brinkley W.R., Lee W.-H. J. Biol. Chem. 270:19545-19550(1995) [PubMed: 7642639] [Abstract] Cited for: SUBUNIT, SUBCELLULAR LOCATION, NUCLEAR LOCALIZATION SIGNAL. |
| [6] | "Characterization of the kinetochore binding domain of CENP-E reveals interactions with the kinetochore proteins CENP-F and hBUBR1." Chan G.K.T., Schaar B.T., Yen T.J. J. Cell Biol. 143:49-63(1998) [PubMed: 9763420] [Abstract] Cited for: INTERACTION WITH BUBR1 AND CENPE, SUBCELLULAR LOCATION. |
| [7] | "Farnesyl transferase inhibitors block the farnesylation of CENP-E and CENP-F and alter the association of CENP-E with the microtubules." Ashar H.R., James L., Gray K., Carr D., Black S., Armstrong L., Bishop W.R., Kirschmeier P. J. Biol. Chem. 275:30451-30457(2000) [PubMed: 10852915] [Abstract] Cited for: ISOPRENYLATION AT CYS-3207. |
| [8] | "Mitosin/CENP-F is a conserved kinetochore protein subjected to cytoplasmic dynein-mediated poleward transport." Yang Z.Y., Guo J., Li N., Qian M., Wang S.N., Zhu X.L. Cell Res. 13:275-283(2003) [PubMed: 12974617] [Abstract] Cited for: FUNCTION, SUBCELLULAR LOCATION. |
| [9] | "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks." Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P., Mann M. Cell 127:635-648(2006) [PubMed: 17081983] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-3150, MASS SPECTROMETRY. Tissue: Epithelium. |
| [10] | "A probability-based approach for high-throughput protein phosphorylation analysis and site localization." Beausoleil S.A., Villen J., Gerber S.A., Rush J., Gygi S.P. Nat. Biotechnol. 24:1285-1292(2006) [PubMed: 16964243] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1747; SER-1750 AND SER-3119, MASS SPECTROMETRY. Tissue: Epithelium. |
| [11] | "Phosphoproteome analysis of the human mitotic spindle." Nousiainen M., Sillje H.H.W., Sauer G., Nigg E.A., Koerner R. Proc. Natl. Acad. Sci. U.S.A. 103:5391-5396(2006) [PubMed: 16565220] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-821; SER-1324; SER-1747; SER-1750; SER-1988; SER-2513; SER-2996; SER-3007; SER-3094; SER-3119; SER-3175 AND SER-3179, MASS SPECTROMETRY. Tissue: Epithelium. |
| [12] | "Cenp-F links kinetochores to Ndel1/Nde1/Lis1/dynein microtubule motor complexes." Vergnolle M.A.S., Taylor S.S. Curr. Biol. 17:1173-1179(2007) [PubMed: 17600710] [Abstract] Cited for: FUNCTION, INTERACTION WITH NDEL1 AND NDE1, SUBCELLULAR LOCATION. |
| [13] | "Improved titanium dioxide enrichment of phosphopeptides from HeLa cells and high confident phosphopeptide identification by cross-validation of MS/MS and MS/MS/MS spectra." Yu L.-R., Zhu Z., Chan K.C., Issaq H.J., Dimitrov D.S., Veenstra T.D. J. Proteome Res. 6:4150-4162(2007) [PubMed: 17924679] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT TYR-1315; THR-1319; SER-3119 AND SER-3150, MASS SPECTROMETRY. Tissue: Epithelium. |
| [14] | "Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry." Molina H., Horn D.M., Tang N., Mathivanan S., Pandey A. Proc. Natl. Acad. Sci. U.S.A. 104:2199-2204(2007) [PubMed: 17287340] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-268; SER-274 AND SER-276, MASS SPECTROMETRY. |
| [15] | "ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage." Matsuoka S., Ballif B.A., Smogorzewska A., McDonald E.R. III, Hurov K.E., Luo J., Bakalarski C.E., Zhao Z., Solimini N., Lerenthal Y., Shiloh Y., Gygi S.P., Elledge S.J. Science 316:1160-1166(2007) [PubMed: 17525332] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1255; SER-1282 AND SER-2638, MASS SPECTROMETRY. |
| [16] | "Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient phosphoproteomic analysis." Cantin G.T., Yi W., Lu B., Park S.K., Xu T., Lee J.-D., Yates J.R. III J. Proteome Res. 7:1346-1351(2008) [PubMed: 18220336] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-3150 AND SER-3175, MASS SPECTROMETRY. |
| [17] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed: 18669648] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-106; THR-144; SER-834; SER-1248; SER-1747; SER-1748; SER-1750; SER-2512; SER-2513; SER-2996; SER-3007; SER-3119; SER-3122; SER-3150; SER-3175 AND SER-3179, MASS SPECTROMETRY. |
| [18] | Colinge J., Superti-Furga G., Bennett K.L. Submitted (OCT-2008) to UniProtKB Cited for: IDENTIFICATION [LARGE SCALE ANALYSIS], MASS SPECTROMETRY. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| U19769 mRNA. Translation: AAA82889.1. U30872 mRNA. Translation: AAA82935.1. AL445666, AL445305 Genomic DNA. Translation: CAH71810.1. AL445305, AL445666 Genomic DNA. Translation: CAH73032.1. U25725 mRNA. Translation: AAA86889.1. | |
| IPI | IPI00855998. |
| PIR | PC4035. |
| RefSeq | NP_057427.3. |
| UniGene | Hs.497741 |
3D structure databases | |
| HSSP | HSSP built from PDB template 1EA8 based on UniProtKB P02649. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | P49454. 5 interactions. |
PTM databases | |
| PhosphoSite | P49454. |
Proteomic databases | |
| PRIDE | P49454. |
Genome annotation databases | |
| GeneID | 1063. |
| KEGG | hsa:1063. |
Organism-specific databases | |
| GeneCards | GC01P212843. |
| H-InvDB | HIX0028827. |
| HGNC | HGNC:1857. CENPF. |
| MIM | 600236. gene. |
| PharmGKB | PA26401. |
| GenAtlas | Search... |
Phylogenomic databases | |
| HOVERGEN | P49454. |
Enzyme and pathway databases | |
| Pathway_Interaction_DB | foxm1pathway. FOXM1 transcription factor network. |
| Reactome | REACT_152. Cell Cycle, Mitotic. |
Gene expression databases | |
| ArrayExpress | P49454. |
| CleanEx | HS_CENPF. |
Family and domain databases | |
| InterPro | IPR019513. Centromere_CenpF_leu-rich_rpt. IPR018463. Centromere_CenpF_N. IPR018302. Centromere_CenpF_Rb-prot-bd. [Graphical view] |
| Pfam | PF10473. Cenp-F_leu_zip. 2 hits. PF10481. Cenp-F_N. 1 hit. PF10490. Rb-bdg_C_Cenp-F. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other Resources | |
| NextBio | 4446. |
| SOURCE | Search... |
Entry information
| Entry name | CENPF_HUMAN | ||||||||
| Accession | Primary (citable) accession number: P49454 Secondary accession number(s): Q13171, Q13246, Q5VVM7 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | HPI (Human Proteome Initiative) | ||||||||
Relevant documents
| Human chromosome 1 Human chromosome 1: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with


