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Protein

60S ribosomal protein L5

Gene

rpl-5

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

This protein binds 5S RNA.By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L5
Gene namesi
Name:rpl-5
ORF Names:F54C9.5
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome II

Organism-specific databases

WormBaseiF54C9.5; CE02255; WBGene00004416; rpl-5.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001314431 – 29360S ribosomal protein L5Add BLAST293

Proteomic databases

EPDiP49405.
PaxDbiP49405.
PeptideAtlasiP49405.
PRIDEiP49405.

PTM databases

iPTMnetiP49405.

Expressioni

Gene expression databases

BgeeiWBGene00004416.

Interactioni

Protein-protein interaction databases

BioGridi39699. 5 interactors.
DIPiDIP-24622N.
IntActiP49405. 1 interactor.
MINTiMINT-1106928.
STRINGi6239.F54C9.5.1.

Structurei

3D structure databases

ProteinModelPortaliP49405.
SMRiP49405.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L18P family.Curated

Phylogenomic databases

eggNOGiKOG0875. Eukaryota.
COG0256. LUCA.
GeneTreeiENSGT00390000008456.
HOGENOMiHOG000105947.
InParanoidiP49405.
KOiK02932.
OMAiVASAYSH.
OrthoDBiEOG091G0GZO.
PhylomeDBiP49405.

Family and domain databases

HAMAPiMF_01337_A. Ribosomal_L18_A. 1 hit.
InterProiIPR005485. Rbsml_L5_euk/L18_arc.
IPR025607. Rbsml_L5e/L18P_C.
[Graphical view]
PANTHERiPTHR23410. PTHR23410. 1 hit.
PfamiPF14204. Ribosomal_L18_c. 1 hit.
PF17144. Ribosomal_L5e. 1 hit.
[Graphical view]
PRINTSiPR00058. RIBOSOMALL5.

Sequencei

Sequence statusi: Complete.

P49405-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGLVKVIKNK AYFKRYQVKL RRRREGKTDY YARKRLTVQD KNKYNTPKYR
60 70 80 90 100
LIVRITNKDV VAQLAYSKIE GDVVVASAYS HELPRYGLKV GLTNYAAAYA
110 120 130 140 150
TGLLLARRHL KTIGLDSTYK GHEELTGEDY NVEEEGDRAP FKAVLDIGLA
160 170 180 190 200
RTTTGSKIFA VMKGVADGGI NVPHSESRFF GFDQESKEYN AEAHRDRILG
210 220 230 240 250
KHVADYMTYL KEEDEDRYKR QFSKFLAAGL NADNLVATYQ KVHSAIRADA
260 270 280 290
SPAAKKAAKP SKRHTAKRLT YDERKQRVAD KKALLLQLKE QQE
Length:293
Mass (Da):33,386
Last modified:February 1, 1996 - v1
Checksum:iF55F3D333BA6D3FB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z49967 Genomic DNA. Translation: CAA90251.1.
PIRiT22631.
RefSeqiNP_495811.1. NM_063410.4.
UniGeneiCel.23311.

Genome annotation databases

EnsemblMetazoaiF54C9.5; F54C9.5; WBGene00004416.
GeneIDi174371.
KEGGicel:CELE_F54C9.5.
UCSCiF54C9.5.1. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z49967 Genomic DNA. Translation: CAA90251.1.
PIRiT22631.
RefSeqiNP_495811.1. NM_063410.4.
UniGeneiCel.23311.

3D structure databases

ProteinModelPortaliP49405.
SMRiP49405.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi39699. 5 interactors.
DIPiDIP-24622N.
IntActiP49405. 1 interactor.
MINTiMINT-1106928.
STRINGi6239.F54C9.5.1.

PTM databases

iPTMnetiP49405.

Proteomic databases

EPDiP49405.
PaxDbiP49405.
PeptideAtlasiP49405.
PRIDEiP49405.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiF54C9.5; F54C9.5; WBGene00004416.
GeneIDi174371.
KEGGicel:CELE_F54C9.5.
UCSCiF54C9.5.1. c. elegans.

Organism-specific databases

CTDi174371.
WormBaseiF54C9.5; CE02255; WBGene00004416; rpl-5.

Phylogenomic databases

eggNOGiKOG0875. Eukaryota.
COG0256. LUCA.
GeneTreeiENSGT00390000008456.
HOGENOMiHOG000105947.
InParanoidiP49405.
KOiK02932.
OMAiVASAYSH.
OrthoDBiEOG091G0GZO.
PhylomeDBiP49405.

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

PROiP49405.

Gene expression databases

BgeeiWBGene00004416.

Family and domain databases

HAMAPiMF_01337_A. Ribosomal_L18_A. 1 hit.
InterProiIPR005485. Rbsml_L5_euk/L18_arc.
IPR025607. Rbsml_L5e/L18P_C.
[Graphical view]
PANTHERiPTHR23410. PTHR23410. 1 hit.
PfamiPF14204. Ribosomal_L18_c. 1 hit.
PF17144. Ribosomal_L5e. 1 hit.
[Graphical view]
PRINTSiPR00058. RIBOSOMALL5.
ProtoNetiSearch...

Entry informationi

Entry nameiRL5_CAEEL
AccessioniPrimary (citable) accession number: P49405
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: February 1, 1996
Last modified: November 30, 2016
This is version 110 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.