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Protein

60S ribosomal protein L9

Gene

RPL9

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiREACT_284541. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_284743. GTP hydrolysis and joining of the 60S ribosomal subunit.
REACT_294537. SRP-dependent cotranslational protein targeting to membrane.
REACT_302001. L13a-mediated translational silencing of Ceruloplasmin expression.
REACT_304736. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
REACT_320638. Formation of a pool of free 40S subunits.
REACT_322398. Eukaryotic Translation Termination.
REACT_323380. Peptide chain elongation.

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L9
Gene namesi
Name:RPL9
Synonyms:YK426
Ordered Locus Names:Os09g0485900, LOC_Os09g31180
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryza
ProteomesiUP000000763 Componenti: Chromosome 9

Organism-specific databases

GrameneiP49210.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 19019060S ribosomal protein L9PRO_0000131107Add
BLAST

Proteomic databases

PaxDbiP49210.

Expressioni

Gene expression databases

ExpressionAtlasiP49210. baseline.

Interactioni

Protein-protein interaction databases

STRINGi39947.LOC_Os09g31180.1.

Structurei

3D structure databases

ProteinModelPortaliP49210.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L6P family.Curated

Phylogenomic databases

eggNOGiCOG0097.
HOGENOMiHOG000039905.
InParanoidiP49210.
KOiK02940.
OMAiLRVRKWF.

Family and domain databases

Gene3Di3.90.930.12. 2 hits.
InterProiIPR000702. Ribosomal_L6.
IPR020040. Ribosomal_L6_a/b-dom.
IPR002359. Ribosomal_L6_CS2.
[Graphical view]
PANTHERiPTHR11655. PTHR11655. 1 hit.
PfamiPF00347. Ribosomal_L6. 2 hits.
[Graphical view]
PIRSFiPIRSF002162. Ribosomal_L6. 1 hit.
SUPFAMiSSF56053. SSF56053. 2 hits.
PROSITEiPS00700. RIBOSOMAL_L6_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P49210-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKTILASETM EIPEGVTVQV AAKVVTVEGP RGKLTRNFKH LNLDFQLLEG
60 70 80 90 100
GRKLQVDAWF GTRRTMAAIR TAISHVQNLI TGVTKGYRYK MRFVYAHFPI
110 120 130 140 150
NASITNSNTA IEIRNFLGEK KVRKVDMLEG VTILRSEKVK DELVLDGNDI
160 170 180 190
ELVSRSAALI NQKCHVKNKD IRKFLDGIYV SDKGTITEDA
Length:190
Mass (Da):21,349
Last modified:June 27, 2006 - v3
Checksum:iC68605FAF43DA121
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti16 – 161V → L in BAA19798 (Ref. 1) Curated
Sequence conflicti190 – 1901A → Q in BAA07209 (Ref. 4) Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D83527 mRNA. Translation: BAA19798.1.
AY323481 mRNA. Translation: AAP92747.1.
AC108756 Genomic DNA. No translation available.
D38012 mRNA. Translation: BAA07209.1.
PIRiT03761.
T04077.
RefSeqiNP_001063520.1. NM_001070055.1.
UniGeneiOs.9253.

Genome annotation databases

EnsemblPlantsiOS09T0485900-01; OS09T0485900-01; OS09G0485900.
GeneIDi4347422.
KEGGiosa:4347422.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D83527 mRNA. Translation: BAA19798.1.
AY323481 mRNA. Translation: AAP92747.1.
AC108756 Genomic DNA. No translation available.
D38012 mRNA. Translation: BAA07209.1.
PIRiT03761.
T04077.
RefSeqiNP_001063520.1. NM_001070055.1.
UniGeneiOs.9253.

3D structure databases

ProteinModelPortaliP49210.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi39947.LOC_Os09g31180.1.

Proteomic databases

PaxDbiP49210.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOS09T0485900-01; OS09T0485900-01; OS09G0485900.
GeneIDi4347422.
KEGGiosa:4347422.

Organism-specific databases

GrameneiP49210.

Phylogenomic databases

eggNOGiCOG0097.
HOGENOMiHOG000039905.
InParanoidiP49210.
KOiK02940.
OMAiLRVRKWF.

Enzyme and pathway databases

ReactomeiREACT_284541. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_284743. GTP hydrolysis and joining of the 60S ribosomal subunit.
REACT_294537. SRP-dependent cotranslational protein targeting to membrane.
REACT_302001. L13a-mediated translational silencing of Ceruloplasmin expression.
REACT_304736. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
REACT_320638. Formation of a pool of free 40S subunits.
REACT_322398. Eukaryotic Translation Termination.
REACT_323380. Peptide chain elongation.

Gene expression databases

ExpressionAtlasiP49210. baseline.

Family and domain databases

Gene3Di3.90.930.12. 2 hits.
InterProiIPR000702. Ribosomal_L6.
IPR020040. Ribosomal_L6_a/b-dom.
IPR002359. Ribosomal_L6_CS2.
[Graphical view]
PANTHERiPTHR11655. PTHR11655. 1 hit.
PfamiPF00347. Ribosomal_L6. 2 hits.
[Graphical view]
PIRSFiPIRSF002162. Ribosomal_L6. 1 hit.
SUPFAMiSSF56053. SSF56053. 2 hits.
PROSITEiPS00700. RIBOSOMAL_L6_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Characterization of rice gene (Yk426) induced by GA3."
    Liu Q., Shoda K., Hara C., Kawai M., Uchimiya H.
    Submitted (FEB-1996) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: cv. Hayayuki.
    Tissue: Anther.
  2. "A rice ribosomal L9 similar protein was induced by oxidant burst."
    Quanhong Y., Rihe P., Aisheng X.
    Submitted (JUN-2003) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  4. "Partial cDNA sequence of ribosomal protein L9 homolog from rice calli exposed to salt stress."
    Nakamura I., Kameya N., Aoki T., Tada T., Norita E., Kanzaki H., Uchimiya H.
    Submitted (SEP-1995) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 101-190.
    Tissue: Callus.

Entry informationi

Entry nameiRL9_ORYSJ
AccessioniPrimary (citable) accession number: P49210
Secondary accession number(s): O04165, Q7XBH6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: June 27, 2006
Last modified: June 24, 2015
This is version 85 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.