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P49210

- RL9_ORYSJ

UniProt

P49210 - RL9_ORYSJ

Protein

60S ribosomal protein L9

Gene

RPL9

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 80 (01 Oct 2014)
      Sequence version 3 (27 Jun 2006)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. rRNA binding Source: InterPro
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. adaxial/abaxial pattern specification Source: EnsemblPlants/Gramene
    2. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    60S ribosomal protein L9
    Gene namesi
    Name:RPL9
    Synonyms:YK426
    Ordered Locus Names:Os09g0485900, LOC_Os09g31180
    OrganismiOryza sativa subsp. japonica (Rice)
    Taxonomic identifieri39947 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
    ProteomesiUP000000763: Chromosome 9

    Organism-specific databases

    GrameneiP49210.

    Subcellular locationi

    GO - Cellular componenti

    1. chloroplast envelope Source: EnsemblPlants/Gramene
    2. cytosolic large ribosomal subunit Source: EnsemblPlants/Gramene
    3. nucleolus Source: EnsemblPlants/Gramene
    4. plasma membrane Source: EnsemblPlants/Gramene
    5. plasmodesma Source: EnsemblPlants/Gramene
    6. vacuolar membrane Source: EnsemblPlants/Gramene

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 19019060S ribosomal protein L9PRO_0000131107Add
    BLAST

    Proteomic databases

    PaxDbiP49210.

    Structurei

    3D structure databases

    ProteinModelPortaliP49210.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L6P family.Curated

    Phylogenomic databases

    eggNOGiCOG0097.
    HOGENOMiHOG000039905.
    KOiK02940.
    OMAiISIEIHH.

    Family and domain databases

    Gene3Di3.90.930.12. 2 hits.
    InterProiIPR000702. Ribosomal_L6.
    IPR020040. Ribosomal_L6_a/b-dom.
    IPR002359. Ribosomal_L6_CS2.
    [Graphical view]
    PANTHERiPTHR11655. PTHR11655. 1 hit.
    PfamiPF00347. Ribosomal_L6. 2 hits.
    [Graphical view]
    PIRSFiPIRSF002162. Ribosomal_L6. 1 hit.
    SUPFAMiSSF56053. SSF56053. 2 hits.
    PROSITEiPS00700. RIBOSOMAL_L6_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P49210-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKTILASETM EIPEGVTVQV AAKVVTVEGP RGKLTRNFKH LNLDFQLLEG    50
    GRKLQVDAWF GTRRTMAAIR TAISHVQNLI TGVTKGYRYK MRFVYAHFPI 100
    NASITNSNTA IEIRNFLGEK KVRKVDMLEG VTILRSEKVK DELVLDGNDI 150
    ELVSRSAALI NQKCHVKNKD IRKFLDGIYV SDKGTITEDA 190
    Length:190
    Mass (Da):21,349
    Last modified:June 27, 2006 - v3
    Checksum:iC68605FAF43DA121
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti16 – 161V → L in BAA19798. 1 PublicationCurated
    Sequence conflicti190 – 1901A → Q in BAA07209. 1 PublicationCurated

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    D83527 mRNA. Translation: BAA19798.1.
    AY323481 mRNA. Translation: AAP92747.1.
    AC108756 Genomic DNA. No translation available.
    D38012 mRNA. Translation: BAA07209.1.
    PIRiT03761.
    T04077.
    RefSeqiNP_001063520.1. NM_001070055.1.
    UniGeneiOs.9253.

    Genome annotation databases

    EnsemblPlantsiOS09T0485900-01; OS09T0485900-01; OS09G0485900.
    GeneIDi4347422.
    KEGGiosa:4347422.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    D83527 mRNA. Translation: BAA19798.1 .
    AY323481 mRNA. Translation: AAP92747.1 .
    AC108756 Genomic DNA. No translation available.
    D38012 mRNA. Translation: BAA07209.1 .
    PIRi T03761.
    T04077.
    RefSeqi NP_001063520.1. NM_001070055.1.
    UniGenei Os.9253.

    3D structure databases

    ProteinModelPortali P49210.
    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PaxDbi P49210.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi OS09T0485900-01 ; OS09T0485900-01 ; OS09G0485900 .
    GeneIDi 4347422.
    KEGGi osa:4347422.

    Organism-specific databases

    Gramenei P49210.

    Phylogenomic databases

    eggNOGi COG0097.
    HOGENOMi HOG000039905.
    KOi K02940.
    OMAi ISIEIHH.

    Family and domain databases

    Gene3Di 3.90.930.12. 2 hits.
    InterProi IPR000702. Ribosomal_L6.
    IPR020040. Ribosomal_L6_a/b-dom.
    IPR002359. Ribosomal_L6_CS2.
    [Graphical view ]
    PANTHERi PTHR11655. PTHR11655. 1 hit.
    Pfami PF00347. Ribosomal_L6. 2 hits.
    [Graphical view ]
    PIRSFi PIRSF002162. Ribosomal_L6. 1 hit.
    SUPFAMi SSF56053. SSF56053. 2 hits.
    PROSITEi PS00700. RIBOSOMAL_L6_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Characterization of rice gene (Yk426) induced by GA3."
      Liu Q., Shoda K., Hara C., Kawai M., Uchimiya H.
      Submitted (FEB-1996) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [MRNA].
      Strain: cv. Hayayuki.
      Tissue: Anther.
    2. "A rice ribosomal L9 similar protein was induced by oxidant burst."
      Quanhong Y., Rihe P., Aisheng X.
      Submitted (JUN-2003) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    4. "Partial cDNA sequence of ribosomal protein L9 homolog from rice calli exposed to salt stress."
      Nakamura I., Kameya N., Aoki T., Tada T., Norita E., Kanzaki H., Uchimiya H.
      Submitted (SEP-1995) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 101-190.
      Tissue: Callus.

    Entry informationi

    Entry nameiRL9_ORYSJ
    AccessioniPrimary (citable) accession number: P49210
    Secondary accession number(s): O04165, Q7XBH6
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 1, 1996
    Last sequence update: June 27, 2006
    Last modified: October 1, 2014
    This is version 80 of the entry and version 3 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Ribosomal proteins
      Ribosomal proteins families and list of entries
    2. Oryza sativa (rice)
      Index of Oryza sativa entries and their corresponding gene designations
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3