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Protein

60S ribosomal protein L9

Gene

RPL9

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-OSA-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-OSA-1799339 SRP-dependent cotranslational protein targeting to membrane
R-OSA-72689 Formation of a pool of free 40S subunits
R-OSA-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-OSA-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-OSA-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L9
Gene namesi
Name:RPL9
Synonyms:YK426
Ordered Locus Names:Os09g0485900, LOC_Os09g31180
ORF Names:OsJ_29817Imported
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryzaOryza sativa
Proteomesi
  • UP000059680 Componenti: Chromosome 9

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001311071 – 19060S ribosomal protein L9Add BLAST190

Proteomic databases

PaxDbiP49210
PRIDEiP49210

Expressioni

Gene expression databases

ExpressionAtlasiP49210 baseline and differential
GenevisibleiP49210 OS

Interactioni

Protein-protein interaction databases

STRINGi39947.LOC_Os09g31180.1

Structurei

3D structure databases

ProteinModelPortaliP49210
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG3255 Eukaryota
COG0097 LUCA
HOGENOMiHOG000039905
InParanoidiP49210
KOiK02940
OMAiVFQDGIY
OrthoDBiEOG09360N9U

Family and domain databases

Gene3Di3.90.930.12, 2 hits
InterProiView protein in InterPro
IPR000702 Ribosomal_L6
IPR020040 Ribosomal_L6_a/b-dom
IPR036789 Ribosomal_L6_a/b-dom_sf
IPR002359 Ribosomal_L6_CS2
PANTHERiPTHR11655 PTHR11655, 1 hit
PfamiView protein in Pfam
PF00347 Ribosomal_L6, 2 hits
PIRSFiPIRSF002162 Ribosomal_L6, 1 hit
SUPFAMiSSF56053 SSF56053, 2 hits
PROSITEiView protein in PROSITE
PS00700 RIBOSOMAL_L6_2, 1 hit

Sequencei

Sequence statusi: Complete.

P49210-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKTILASETM EIPEGVTVQV AAKVVTVEGP RGKLTRNFKH LNLDFQLLEG
60 70 80 90 100
GRKLQVDAWF GTRRTMAAIR TAISHVQNLI TGVTKGYRYK MRFVYAHFPI
110 120 130 140 150
NASITNSNTA IEIRNFLGEK KVRKVDMLEG VTILRSEKVK DELVLDGNDI
160 170 180 190
ELVSRSAALI NQKCHVKNKD IRKFLDGIYV SDKGTITEDA
Length:190
Mass (Da):21,349
Last modified:June 27, 2006 - v3
Checksum:iC68605FAF43DA121
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti16V → L in BAA19798 (Ref. 1) Curated1
Sequence conflicti190A → Q in BAA07209 (Ref. 7) Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D83527 mRNA Translation: BAA19798.1
AY323481 mRNA Translation: AAP92747.1
AC108756 Genomic DNA No translation available.
AP008215 Genomic DNA Translation: BAF25434.1
AP014965 Genomic DNA Translation: BAT08699.1
CM000146 Genomic DNA Translation: EAZ45175.1
D38012 mRNA Translation: BAA07209.1
PIRiT03761
T04077
RefSeqiXP_015612091.1, XM_015756605.1
UniGeneiOs.4982
Os.9253

Genome annotation databases

EnsemblPlantsiOs09t0485900-01; Os09t0485900-01; Os09g0485900
GeneIDi4347422
GrameneiOs09t0485900-01; Os09t0485900-01; Os09g0485900
KEGGiosa:4347422

Similar proteinsi

Entry informationi

Entry nameiRL9_ORYSJ
AccessioniPrimary (citable) accession number: P49210
Secondary accession number(s): O04165, Q0J0R8, Q7XBH6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: June 27, 2006
Last modified: March 28, 2018
This is version 103 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health