P49210 (RL9_ORYSJ) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
60S ribosomal protein L9

Gene names

Name:	RPL9
Synonyms:	YK426
Ordered Locus Names:	Os09g0485900, LOC_Os09g31180

Organism

Oryza sativa subsp. japonica (Rice) [Reference proteome]

Taxonomic identifier

39947 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Tracheophyta › Euphyllophyta › Spermatophyta › Magnoliophyta › Liliopsida › commelinids › Poales › Poaceae › BEP clade › Ehrhartoideae › Oryzeae › Oryza › Oryza sativa

Protein attributes

Sequence length	190 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Sequence similarities

Belongs to the ribosomal protein L6P family.

Ontologies

Keywords
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	adaxial/abaxial pattern specification Inferred from electronic annotation. Source: EnsemblPlants/Gramene translation Inferred from electronic annotation. Source: InterPro
Cellular_component	chloroplast envelope Inferred from electronic annotation. Source: EnsemblPlants/Gramene cytosolic large ribosomal subunit Inferred from electronic annotation. Source: EnsemblPlants/Gramene nucleolus Inferred from electronic annotation. Source: EnsemblPlants/Gramene plasma membrane Inferred from electronic annotation. Source: EnsemblPlants/Gramene vacuole Inferred from electronic annotation. Source: EnsemblPlants/Gramene
Molecular_function	rRNA binding Inferred from electronic annotation. Source: InterPro structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 190	190	60S ribosomal protein L9		PRO_0000131107
Experimental info
	Sequence conflict	16	1	V → L in BAA19798. Ref.1
	Sequence conflict	190	1	A → Q in BAA07209. Ref.4

Sequences

	Sequence		Length	Mass (Da)
	P49210 [UniParc]. Last modified June 27, 2006. Version 3. Checksum: C68605FAF43DA121	FASTA	190	21,349
	10 20 30 40 50 60 MKTILASETM EIPEGVTVQV AAKVVTVEGP RGKLTRNFKH LNLDFQLLEG GRKLQVDAWF 70 80 90 100 110 120 GTRRTMAAIR TAISHVQNLI TGVTKGYRYK MRFVYAHFPI NASITNSNTA IEIRNFLGEK 130 140 150 160 170 180 KVRKVDMLEG VTILRSEKVK DELVLDGNDI ELVSRSAALI NQKCHVKNKD IRKFLDGIYV 190 SDKGTITEDA

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Characterization of rice gene (Yk426) induced by GA3." Liu Q., Shoda K., Hara C., Kawai M., Uchimiya H. Submitted (FEB-1996) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA]. Strain: cv. Hayayuki. Tissue: Anther.
[2]	"A rice ribosomal L9 similar protein was induced by oxidant burst." Quanhong Y., Rihe P., Aisheng X. Submitted (JUN-2003) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA].
[3]	"The map-based sequence of the rice genome." International rice genome sequencing project (IRGSP) Nature 436:793-800(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[4]	"Partial cDNA sequence of ribosomal protein L9 homolog from rice calli exposed to salt stress." Nakamura I., Kameya N., Aoki T., Tada T., Norita E., Kanzaki H., Uchimiya H. Submitted (SEP-1995) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 101-190. Tissue: Callus.

Cross-references

Sequence databases
EMBL GenBank DDBJ	D83527 mRNA. Translation: BAA19798.1. AY323481 mRNA. Translation: AAP92747.1. AC108756 Genomic DNA. No translation available. D38012 mRNA. Translation: BAA07209.1.
PIR	T03761. T04077.
RefSeq	NP_001063520.1. NM_001070055.1.
UniGene	Os.9253.
3D structure databases
ProteinModelPortal	P49210.
ModBase	Search...
Proteomic databases
PaxDb	P49210.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	LOC_Os09g31180.1; LOC_Os09g31180.1; LOC_Os09g31180.
GeneID	4347422.
KEGG	osa:4347422.
Organism-specific databases
Gramene	P49210.
Phylogenomic databases
eggNOG	COG0097.
HOGENOM	HOG000039905.
KO	K02940.
OMA	AVRTVCS.
ProtClustDB	CLSN2692361.
Gene expression databases
ArrayExpress	P49210.
Family and domain databases
Gene3D	3.90.930.12. 2 hits.
InterPro	IPR000702. Ribosomal_L6. IPR020040. Ribosomal_L6_a/b-dom. IPR002359. Ribosomal_L6_CS2. [Graphical view]
PANTHER	PTHR11655. PTHR11655. 1 hit.
Pfam	PF00347. Ribosomal_L6. 2 hits. [Graphical view]
PIRSF	PIRSF002162. Ribosomal_L6. 1 hit.
SUPFAM	SSF56053. Ribosomal_L6. 2 hits.
PROSITE	PS00700. RIBOSOMAL_L6_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RL9_ORYSJ

Accession

Primary (citable) accession number: P49210
Secondary accession number(s): O04165, Q7XBH6

Entry history

Integrated into UniProtKB/Swiss-Prot:	February 1, 1996
Last sequence update:	June 27, 2006
Last modified:	April 3, 2013
This is version 73 of the entry and version 3 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Plant Protein Annotation Program