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P49210

- RL9_ORYSJ

UniProt

P49210 - RL9_ORYSJ

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Protein

60S ribosomal protein L9

Gene

RPL9

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. rRNA binding Source: InterPro
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L9
Gene namesi
Name:RPL9
Synonyms:YK426
Ordered Locus Names:Os09g0485900, LOC_Os09g31180
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
ProteomesiUP000000763: Chromosome 9

Organism-specific databases

GrameneiP49210.

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 19019060S ribosomal protein L9PRO_0000131107Add
BLAST

Proteomic databases

PaxDbiP49210.

Expressioni

Gene expression databases

ExpressionAtlasiP49210. baseline.

Structurei

3D structure databases

ProteinModelPortaliP49210.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L6P family.Curated

Phylogenomic databases

eggNOGiCOG0097.
HOGENOMiHOG000039905.
InParanoidiP49210.
KOiK02940.
OMAiISIEIHH.

Family and domain databases

Gene3Di3.90.930.12. 2 hits.
InterProiIPR000702. Ribosomal_L6.
IPR020040. Ribosomal_L6_a/b-dom.
IPR002359. Ribosomal_L6_CS2.
[Graphical view]
PANTHERiPTHR11655. PTHR11655. 1 hit.
PfamiPF00347. Ribosomal_L6. 2 hits.
[Graphical view]
PIRSFiPIRSF002162. Ribosomal_L6. 1 hit.
SUPFAMiSSF56053. SSF56053. 2 hits.
PROSITEiPS00700. RIBOSOMAL_L6_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P49210 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKTILASETM EIPEGVTVQV AAKVVTVEGP RGKLTRNFKH LNLDFQLLEG
60 70 80 90 100
GRKLQVDAWF GTRRTMAAIR TAISHVQNLI TGVTKGYRYK MRFVYAHFPI
110 120 130 140 150
NASITNSNTA IEIRNFLGEK KVRKVDMLEG VTILRSEKVK DELVLDGNDI
160 170 180 190
ELVSRSAALI NQKCHVKNKD IRKFLDGIYV SDKGTITEDA
Length:190
Mass (Da):21,349
Last modified:June 27, 2006 - v3
Checksum:iC68605FAF43DA121
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti16 – 161V → L in BAA19798. 1 PublicationCurated
Sequence conflicti190 – 1901A → Q in BAA07209. 1 PublicationCurated

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
D83527 mRNA. Translation: BAA19798.1.
AY323481 mRNA. Translation: AAP92747.1.
AC108756 Genomic DNA. No translation available.
D38012 mRNA. Translation: BAA07209.1.
PIRiT03761.
T04077.
RefSeqiNP_001063520.1. NM_001070055.1.
UniGeneiOs.9253.

Genome annotation databases

EnsemblPlantsiOS09T0485900-01; OS09T0485900-01; OS09G0485900.
GeneIDi4347422.
KEGGiosa:4347422.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
D83527 mRNA. Translation: BAA19798.1 .
AY323481 mRNA. Translation: AAP92747.1 .
AC108756 Genomic DNA. No translation available.
D38012 mRNA. Translation: BAA07209.1 .
PIRi T03761.
T04077.
RefSeqi NP_001063520.1. NM_001070055.1.
UniGenei Os.9253.

3D structure databases

ProteinModelPortali P49210.
ModBasei Search...
MobiDBi Search...

Proteomic databases

PaxDbi P49210.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi OS09T0485900-01 ; OS09T0485900-01 ; OS09G0485900 .
GeneIDi 4347422.
KEGGi osa:4347422.

Organism-specific databases

Gramenei P49210.

Phylogenomic databases

eggNOGi COG0097.
HOGENOMi HOG000039905.
InParanoidi P49210.
KOi K02940.
OMAi ISIEIHH.

Gene expression databases

ExpressionAtlasi P49210. baseline.

Family and domain databases

Gene3Di 3.90.930.12. 2 hits.
InterProi IPR000702. Ribosomal_L6.
IPR020040. Ribosomal_L6_a/b-dom.
IPR002359. Ribosomal_L6_CS2.
[Graphical view ]
PANTHERi PTHR11655. PTHR11655. 1 hit.
Pfami PF00347. Ribosomal_L6. 2 hits.
[Graphical view ]
PIRSFi PIRSF002162. Ribosomal_L6. 1 hit.
SUPFAMi SSF56053. SSF56053. 2 hits.
PROSITEi PS00700. RIBOSOMAL_L6_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Characterization of rice gene (Yk426) induced by GA3."
    Liu Q., Shoda K., Hara C., Kawai M., Uchimiya H.
    Submitted (FEB-1996) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: cv. Hayayuki.
    Tissue: Anther.
  2. "A rice ribosomal L9 similar protein was induced by oxidant burst."
    Quanhong Y., Rihe P., Aisheng X.
    Submitted (JUN-2003) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  4. "Partial cDNA sequence of ribosomal protein L9 homolog from rice calli exposed to salt stress."
    Nakamura I., Kameya N., Aoki T., Tada T., Norita E., Kanzaki H., Uchimiya H.
    Submitted (SEP-1995) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 101-190.
    Tissue: Callus.

Entry informationi

Entry nameiRL9_ORYSJ
AccessioniPrimary (citable) accession number: P49210
Secondary accession number(s): O04165, Q7XBH6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: June 27, 2006
Last modified: October 29, 2014
This is version 81 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3