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Protein

60S ribosomal protein L9-1

Gene

RPL9B

more
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • adaxial/abaxial pattern specification Source: TAIR
  • cytoplasmic translation Source: GO_Central
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-ATH-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-ATH-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-ATH-72689. Formation of a pool of free 40S subunits.
R-ATH-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-ATH-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-ATH-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L9-1
Gene namesi
Name:RPL9B
Ordered Locus Names:At1g33120
ORF Names:T9L6.2
AND
Name:RPL9C
Ordered Locus Names:At1g33140
ORF Names:T9L6.5
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

TAIRiAT1G33120.
AT1G33140.

Subcellular locationi

GO - Cellular componenti

  • chloroplast Source: TAIR
  • chloroplast envelope Source: TAIR
  • cytosol Source: TAIR
  • cytosolic large ribosomal subunit Source: TAIR
  • cytosolic ribosome Source: TAIR
  • membrane Source: TAIR
  • nucleolus Source: TAIR
  • plasma membrane Source: TAIR
  • plasmodesma Source: TAIR
  • vacuolar membrane Source: TAIR
  • vacuole Source: TAIR
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001311061 – 19460S ribosomal protein L9-1Add BLAST194

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei75PhosphothreonineCombined sources1

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDbiP49209.
PRIDEiP49209.

PTM databases

iPTMnetiP49209.

Expressioni

Gene expression databases

GenevisibleiP49209. AT.

Interactioni

Protein-protein interaction databases

BioGridi25442. 2 interactors.
25445. 5 interactors.
IntActiP49209. 1 interactor.
STRINGi3702.AT1G33140.1.

Structurei

3D structure databases

ProteinModelPortaliP49209.
SMRiP49209.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L6P family.Curated

Phylogenomic databases

eggNOGiKOG3255. Eukaryota.
COG0097. LUCA.
HOGENOMiHOG000039905.
InParanoidiP49209.
KOiK02940.
OMAiLRVRKWF.
OrthoDBiEOG09360N9U.
PhylomeDBiP49209.

Family and domain databases

Gene3Di3.90.930.12. 2 hits.
InterProiIPR000702. Ribosomal_L6.
IPR020040. Ribosomal_L6_a/b-dom.
IPR002359. Ribosomal_L6_CS2.
[Graphical view]
PANTHERiPTHR11655. PTHR11655. 1 hit.
PfamiPF00347. Ribosomal_L6. 2 hits.
[Graphical view]
PIRSFiPIRSF002162. Ribosomal_L6. 1 hit.
SUPFAMiSSF56053. SSF56053. 2 hits.
PROSITEiPS00700. RIBOSOMAL_L6_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P49209-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKTILSSETM DIPDSVTIKV HAKVIEVEGP RGKLVRDFKH LNLDFQLIKD
60 70 80 90 100
PETGKKKLKI DSWFGTRKTS ASIRTALSHV DNLISGVTRG FRYKMRFVYA
110 120 130 140 150
HFPINASIGG DGKSIEIRNF LGEKKVRKVE MLDGVTIVRS EKVKDEIVLD
160 170 180 190
GNDIELVSRS CALINQKCHV KKKDIRKFLD GIYVSEKSKI VEEE
Length:194
Mass (Da):22,018
Last modified:August 2, 2002 - v3
Checksum:i451874EAE5838ECD
GO

Sequence cautioni

The sequence CAA63024 differs from that shown. Reason: Frameshift at positions 134, 139 and 141.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti12I → R in CAA79045 (PubMed:8281187).Curated1
Sequence conflicti71A → V in CAA63024 (Ref. 1) Curated1
Sequence conflicti78S → R in CAA63024 (Ref. 1) Curated1
Sequence conflicti106A → V in CAA63024 (Ref. 1) Curated1
Sequence conflicti113 – 114KS → SL in CAA63024 (Ref. 1) Curated2

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X91958 mRNA. Translation: CAA63024.1. Frameshift.
AC021045 Genomic DNA. Translation: AAF97348.1.
AC021045 Genomic DNA. Translation: AAF97345.1.
CP002684 Genomic DNA. Translation: AEE31568.1.
CP002684 Genomic DNA. Translation: AEE31569.1.
AF324688 mRNA. Translation: AAG40039.1.
AF326873 mRNA. Translation: AAG41455.1.
AF339694 mRNA. Translation: AAK00376.1.
AF375419 mRNA. Translation: AAK53003.1.
AY039593 mRNA. Translation: AAK62648.1.
AY054156 mRNA. Translation: AAL06817.1.
AY058051 mRNA. Translation: AAL24159.1.
AY072446 mRNA. Translation: AAL62438.1.
AY128910 mRNA. Translation: AAM91310.1.
Z17727 mRNA. Translation: CAA79045.1.
Z17728 mRNA. Translation: CAA79046.1.
PIRiF86455.
S71255.
RefSeqiNP_564417.1. NM_103046.4.
NP_564418.1. NM_103048.5.
UniGeneiAt.22864.
At.23014.
At.68560.

Genome annotation databases

EnsemblPlantsiAT1G33120.1; AT1G33120.1; AT1G33120.
AT1G33140.1; AT1G33140.1; AT1G33140.
GeneIDi840208.
840211.
GrameneiAT1G33120.1; AT1G33120.1; AT1G33120.
AT1G33140.1; AT1G33140.1; AT1G33140.
KEGGiath:AT1G33120.
ath:AT1G33140.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X91958 mRNA. Translation: CAA63024.1. Frameshift.
AC021045 Genomic DNA. Translation: AAF97348.1.
AC021045 Genomic DNA. Translation: AAF97345.1.
CP002684 Genomic DNA. Translation: AEE31568.1.
CP002684 Genomic DNA. Translation: AEE31569.1.
AF324688 mRNA. Translation: AAG40039.1.
AF326873 mRNA. Translation: AAG41455.1.
AF339694 mRNA. Translation: AAK00376.1.
AF375419 mRNA. Translation: AAK53003.1.
AY039593 mRNA. Translation: AAK62648.1.
AY054156 mRNA. Translation: AAL06817.1.
AY058051 mRNA. Translation: AAL24159.1.
AY072446 mRNA. Translation: AAL62438.1.
AY128910 mRNA. Translation: AAM91310.1.
Z17727 mRNA. Translation: CAA79045.1.
Z17728 mRNA. Translation: CAA79046.1.
PIRiF86455.
S71255.
RefSeqiNP_564417.1. NM_103046.4.
NP_564418.1. NM_103048.5.
UniGeneiAt.22864.
At.23014.
At.68560.

3D structure databases

ProteinModelPortaliP49209.
SMRiP49209.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi25442. 2 interactors.
25445. 5 interactors.
IntActiP49209. 1 interactor.
STRINGi3702.AT1G33140.1.

PTM databases

iPTMnetiP49209.

Proteomic databases

PaxDbiP49209.
PRIDEiP49209.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT1G33120.1; AT1G33120.1; AT1G33120.
AT1G33140.1; AT1G33140.1; AT1G33140.
GeneIDi840208.
840211.
GrameneiAT1G33120.1; AT1G33120.1; AT1G33120.
AT1G33140.1; AT1G33140.1; AT1G33140.
KEGGiath:AT1G33120.
ath:AT1G33140.

Organism-specific databases

TAIRiAT1G33120.
AT1G33140.

Phylogenomic databases

eggNOGiKOG3255. Eukaryota.
COG0097. LUCA.
HOGENOMiHOG000039905.
InParanoidiP49209.
KOiK02940.
OMAiLRVRKWF.
OrthoDBiEOG09360N9U.
PhylomeDBiP49209.

Enzyme and pathway databases

ReactomeiR-ATH-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-ATH-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-ATH-72689. Formation of a pool of free 40S subunits.
R-ATH-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-ATH-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-ATH-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

PROiP49209.

Gene expression databases

GenevisibleiP49209. AT.

Family and domain databases

Gene3Di3.90.930.12. 2 hits.
InterProiIPR000702. Ribosomal_L6.
IPR020040. Ribosomal_L6_a/b-dom.
IPR002359. Ribosomal_L6_CS2.
[Graphical view]
PANTHERiPTHR11655. PTHR11655. 1 hit.
PfamiPF00347. Ribosomal_L6. 2 hits.
[Graphical view]
PIRSFiPIRSF002162. Ribosomal_L6. 1 hit.
SUPFAMiSSF56053. SSF56053. 2 hits.
PROSITEiPS00700. RIBOSOMAL_L6_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL91_ARATH
AccessioniPrimary (citable) accession number: P49209
Secondary accession number(s): Q9LDX2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: August 2, 2002
Last modified: November 30, 2016
This is version 127 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.