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Protein

60S ribosomal protein L9-1

Gene

RPL9B

more
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • RNA binding Source: GO_Central
  • rRNA binding Source: InterPro
  • structural constituent of ribosome Source: CAFA

GO - Biological processi

  • adaxial/abaxial pattern specification Source: TAIR
  • cytoplasmic translation Source: GO_Central

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-ATH-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-ATH-1799339 SRP-dependent cotranslational protein targeting to membrane
R-ATH-72689 Formation of a pool of free 40S subunits
R-ATH-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-ATH-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-ATH-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L9-1
Gene namesi
Name:RPL9B
Ordered Locus Names:At1g33120
ORF Names:T9L6.2
AND
Name:RPL9C
Ordered Locus Names:At1g33140
ORF Names:T9L6.5
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

AraportiAT1G33120
AT1G33140
TAIRilocus:2196646 AT1G33140
locus:2206965 AT1G33120

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001311061 – 19460S ribosomal protein L9-1Add BLAST194

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei75PhosphothreonineCombined sources1

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDbiP49209
PRIDEiP49209

PTM databases

iPTMnetiP49209

Expressioni

Gene expression databases

ExpressionAtlasiP49209 baseline and differential
GenevisibleiP49209 AT

Interactioni

Protein-protein interaction databases

BioGridi25442, 2 interactors
25445, 5 interactors
IntActiP49209, 1 interactor
STRINGi3702.AT1G33140.1

Structurei

3D structure databases

ProteinModelPortaliP49209
SMRiP49209
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG3255 Eukaryota
COG0097 LUCA
HOGENOMiHOG000039905
InParanoidiP49209
KOiK02940
OMAiVFQDGIY
OrthoDBiEOG09360N9U
PhylomeDBiP49209

Family and domain databases

Gene3Di3.90.930.12, 2 hits
InterProiView protein in InterPro
IPR000702 Ribosomal_L6
IPR020040 Ribosomal_L6_a/b-dom
IPR036789 Ribosomal_L6_a/b-dom_sf
IPR002359 Ribosomal_L6_CS2
PANTHERiPTHR11655 PTHR11655, 1 hit
PfamiView protein in Pfam
PF00347 Ribosomal_L6, 2 hits
PIRSFiPIRSF002162 Ribosomal_L6, 1 hit
SUPFAMiSSF56053 SSF56053, 2 hits
PROSITEiView protein in PROSITE
PS00700 RIBOSOMAL_L6_2, 1 hit

Sequencei

Sequence statusi: Complete.

P49209-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKTILSSETM DIPDSVTIKV HAKVIEVEGP RGKLVRDFKH LNLDFQLIKD
60 70 80 90 100
PETGKKKLKI DSWFGTRKTS ASIRTALSHV DNLISGVTRG FRYKMRFVYA
110 120 130 140 150
HFPINASIGG DGKSIEIRNF LGEKKVRKVE MLDGVTIVRS EKVKDEIVLD
160 170 180 190
GNDIELVSRS CALINQKCHV KKKDIRKFLD GIYVSEKSKI VEEE
Length:194
Mass (Da):22,018
Last modified:August 2, 2002 - v3
Checksum:i451874EAE5838ECD
GO

Sequence cautioni

The sequence CAA63024 differs from that shown. Reason: Frameshift at positions 134, 139 and 141.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti12I → R in CAA79045 (PubMed:8281187).Curated1
Sequence conflicti71A → V in CAA63024 (Ref. 1) Curated1
Sequence conflicti78S → R in CAA63024 (Ref. 1) Curated1
Sequence conflicti106A → V in CAA63024 (Ref. 1) Curated1
Sequence conflicti113 – 114KS → SL in CAA63024 (Ref. 1) Curated2

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X91958 mRNA Translation: CAA63024.1 Frameshift.
AC021045 Genomic DNA Translation: AAF97348.1
AC021045 Genomic DNA Translation: AAF97345.1
CP002684 Genomic DNA Translation: AEE31568.1
CP002684 Genomic DNA Translation: AEE31569.1
AF324688 mRNA Translation: AAG40039.1
AF326873 mRNA Translation: AAG41455.1
AF339694 mRNA Translation: AAK00376.1
AF375419 mRNA Translation: AAK53003.1
AY039593 mRNA Translation: AAK62648.1
AY054156 mRNA Translation: AAL06817.1
AY058051 mRNA Translation: AAL24159.1
AY072446 mRNA Translation: AAL62438.1
AY128910 mRNA Translation: AAM91310.1
Z17727 mRNA Translation: CAA79045.1
Z17728 mRNA Translation: CAA79046.1
PIRiF86455
S71255
RefSeqiNP_564417.1, NM_103046.4
NP_564418.1, NM_103048.5
UniGeneiAt.22864
At.23014
At.68560

Genome annotation databases

EnsemblPlantsiAT1G33120.1; AT1G33120.1; AT1G33120
AT1G33140.1; AT1G33140.1; AT1G33140
GeneIDi840208
840211
GrameneiAT1G33120.1; AT1G33120.1; AT1G33120
AT1G33140.1; AT1G33140.1; AT1G33140
KEGGiath:AT1G33120
ath:AT1G33140

Similar proteinsi

Entry informationi

Entry nameiRL91_ARATH
AccessioniPrimary (citable) accession number: P49209
Secondary accession number(s): Q9LDX2
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: August 2, 2002
Last modified: April 25, 2018
This is version 136 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health