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P49200

- RS201_ARATH

UniProt

P49200 - RS201_ARATH

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Protein

40S ribosomal protein S20-1

Gene
RPS20A, At3g45030, F14D17_100
RPS20C, At5g62300, MMI9.13, MMI9_120
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. RNA binding Source: InterPro
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiREACT_187631. SRP-dependent cotranslational protein targeting to membrane.
REACT_187829. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
REACT_190931. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).

Names & Taxonomyi

Organism-specific databases

Protein namesi
Recommended name:
40S ribosomal protein S20-1
Gene namesi
Name:RPS20A
Ordered Locus Names:At3g45030
ORF Names:F14D17_100
AND
Name:RPS20C
Ordered Locus Names:At5g62300
ORF Names:MMI9.13, MMI9_120
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548: Chromosome 3, UP000006548: Chromosome 5
TAIRiAT3G45030.
AT5G62300.

Subcellular locationi

GO - Cellular componenti

  1. cell wall Source: TAIR
  2. cytosol Source: TAIR
  3. cytosolic small ribosomal subunit Source: TAIR

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 12412440S ribosomal protein S20-1UniRule annotationPRO_0000146688Add
BLAST

Proteomic databases

PaxDbiP49200.
PRIDEiP49200.

Expressioni

Gene expression databases

GenevestigatoriP49200.

Interactioni

Protein-protein interaction databases

BioGridi21595. 5 interactions.
8958. 2 interactions.

Structurei

3D structure databases

ProteinModelPortaliP49200.
SMRiP49200. Positions 7-123.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0051.
HOGENOMiHOG000270245.
InParanoidiP49200.
KOiK02969.
OMAiERQNIRI.
PhylomeDBiP49200.

Family and domain databases

Gene3Di3.30.70.600. 1 hit.
HAMAPiMF_00508. Ribosomal_S10.
InterProiIPR001848. Ribosomal_S10.
IPR018268. Ribosomal_S10_CS.
IPR027486. Ribosomal_S10_dom.
IPR005729. Ribosomal_S10_euk/arc.
[Graphical view]
PANTHERiPTHR11700. PTHR11700. 1 hit.
PfamiPF00338. Ribosomal_S10. 1 hit.
[Graphical view]
PRINTSiPR00971. RIBOSOMALS10.
SUPFAMiSSF54999. SSF54999. 1 hit.
TIGRFAMsiTIGR01046. S10_Arc_S20_Euk. 1 hit.
PROSITEiPS00361. RIBOSOMAL_S10. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P49200-1 [UniParc]FASTAAdd to Basket

« Hide

MATAYQPMKP GKAGLEEPLE QIHKIRITLS SKNVKNLEKV CTDLVRGAKD    50
KRLRVKGPVR MPTKVLKITT RKAPCGEGTN TWDRFELRVH KRVIDLFSSP 100
DVVKQITSIT IEPGVEVEVT IADS 124
Length:124
Mass (Da):13,878
Last modified:June 20, 2002 - v2
Checksum:iCBAA848100E1BFD2
GO

Sequence cautioni

The sequence BAA97194.1 differs from that shown. Reason: Erroneous initiation.
The sequence CAB89318.1 differs from that shown. Reason: Erroneous initiation.

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti25 – 251I → L in CAA81578. 1 Publication
Sequence conflicti31 – 311S → P in CAA81329. 1 Publication
Sequence conflicti35 – 351K → N in CAA81186. 1 Publication
Sequence conflicti36 – 361N → I in CAA81578. 1 Publication
Sequence conflicti45 – 451V → A in CAA81578. 1 Publication
Sequence conflicti56 – 561K → M in CAA81578. 1 Publication
Sequence conflicti77 – 771E → D in CAA81578. 1 Publication
Sequence conflicti97 – 10812FSSPD…KQITS → SALLMWSTRSV in CAA81186. 1 PublicationAdd
BLAST
Sequence conflicti97 – 971F → H in CAA81578. 1 Publication
Sequence conflicti108 – 1081S → P in CAA81578. 1 Publication
Sequence conflicti124 – 1241S → A in CAA81578. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL353992 Genomic DNA. Translation: CAB89318.1. Different initiation.
AB019235 Genomic DNA. Translation: BAA97194.1. Different initiation.
CP002686 Genomic DNA. Translation: AEE77981.1.
CP002688 Genomic DNA. Translation: AED97593.1.
CP002688 Genomic DNA. Translation: AED97594.1.
AF325017 mRNA. Translation: AAG40369.1.
AF370460 mRNA. Translation: AAK43837.1.
AY096646 mRNA. Translation: AAM20143.1.
AY114024 mRNA. Translation: AAM45072.1.
AY085673 mRNA. Translation: AAM62892.1.
Z27060 mRNA. Translation: CAA81578.1.
Z26188 mRNA. Translation: CAA81186.1.
Z26558 mRNA. Translation: CAA81329.1.
RefSeqiNP_001078781.1. NM_001085312.1.
NP_190089.2. NM_114372.5.
NP_201036.1. NM_125624.3.
UniGeneiAt.1758.
At.23495.

Genome annotation databases

EnsemblPlantsiAT3G45030.1; AT3G45030.1; AT3G45030.
AT5G62300.1; AT5G62300.1; AT5G62300.
AT5G62300.2; AT5G62300.2; AT5G62300.
GeneIDi823638.
836351.
KEGGiath:AT3G45030.
ath:AT5G62300.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL353992 Genomic DNA. Translation: CAB89318.1 . Different initiation.
AB019235 Genomic DNA. Translation: BAA97194.1 . Different initiation.
CP002686 Genomic DNA. Translation: AEE77981.1 .
CP002688 Genomic DNA. Translation: AED97593.1 .
CP002688 Genomic DNA. Translation: AED97594.1 .
AF325017 mRNA. Translation: AAG40369.1 .
AF370460 mRNA. Translation: AAK43837.1 .
AY096646 mRNA. Translation: AAM20143.1 .
AY114024 mRNA. Translation: AAM45072.1 .
AY085673 mRNA. Translation: AAM62892.1 .
Z27060 mRNA. Translation: CAA81578.1 .
Z26188 mRNA. Translation: CAA81186.1 .
Z26558 mRNA. Translation: CAA81329.1 .
RefSeqi NP_001078781.1. NM_001085312.1.
NP_190089.2. NM_114372.5.
NP_201036.1. NM_125624.3.
UniGenei At.1758.
At.23495.

3D structure databases

ProteinModelPortali P49200.
SMRi P49200. Positions 7-123.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 21595. 5 interactions.
8958. 2 interactions.

Proteomic databases

PaxDbi P49200.
PRIDEi P49200.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi AT3G45030.1 ; AT3G45030.1 ; AT3G45030 .
AT5G62300.1 ; AT5G62300.1 ; AT5G62300 .
AT5G62300.2 ; AT5G62300.2 ; AT5G62300 .
GeneIDi 823638.
836351.
KEGGi ath:AT3G45030.
ath:AT5G62300.

Organism-specific databases

GeneFarmi 916. 71.
926. 71.
TAIRi AT3G45030.
AT5G62300.

Phylogenomic databases

eggNOGi COG0051.
HOGENOMi HOG000270245.
InParanoidi P49200.
KOi K02969.
OMAi ERQNIRI.
PhylomeDBi P49200.

Enzyme and pathway databases

Reactomei REACT_187631. SRP-dependent cotranslational protein targeting to membrane.
REACT_187829. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
REACT_190931. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).

Gene expression databases

Genevestigatori P49200.

Family and domain databases

Gene3Di 3.30.70.600. 1 hit.
HAMAPi MF_00508. Ribosomal_S10.
InterProi IPR001848. Ribosomal_S10.
IPR018268. Ribosomal_S10_CS.
IPR027486. Ribosomal_S10_dom.
IPR005729. Ribosomal_S10_euk/arc.
[Graphical view ]
PANTHERi PTHR11700. PTHR11700. 1 hit.
Pfami PF00338. Ribosomal_S10. 1 hit.
[Graphical view ]
PRINTSi PR00971. RIBOSOMALS10.
SUPFAMi SSF54999. SSF54999. 1 hit.
TIGRFAMsi TIGR01046. S10_Arc_S20_Euk. 1 hit.
PROSITEi PS00361. RIBOSOMAL_S10. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana."
    Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F.
    , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    Nature 408:820-822(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA] (AT3G45030).
    Strain: cv. Columbia.
  2. "Structural analysis of Arabidopsis thaliana chromosome 5. X. Sequence features of the regions of 3,076,755 bp covered by sixty P1 and TAC clones."
    Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Kotani H., Tabata S.
    DNA Res. 7:31-63(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA] (AT5G62300).
    Strain: cv. Columbia.
  3. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  4. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (AT3G45030 AND AT5G62300).
    Strain: cv. Columbia.
  5. "Full-length cDNA from Arabidopsis thaliana."
    Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A.
    Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (AT5G62300).
  6. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
    Tissue: Dry seed and Seedling.
  7. "The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome."
    Barakat A., Szick-Miranda K., Chang I.-F., Guyot R., Blanc G., Cooke R., Delseny M., Bailey-Serres J.
    Plant Physiol. 127:398-415(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY ORGANIZATION, NOMENCLATURE.

Entry informationi

Entry nameiRS201_ARATH
AccessioniPrimary (citable) accession number: P49200
Secondary accession number(s): Q42168, Q9FPI1, Q9LDG8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: June 20, 2002
Last modified: September 3, 2014
This is version 111 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi