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P49200 (RS201_ARATH) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 108. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
40S ribosomal protein S20-1
Gene names
Name:RPS20A
Ordered Locus Names:At3g45030
ORF Names:F14D17_100
AND
Name:RPS20C
Ordered Locus Names:At5g62300
ORF Names:MMI9.13, MMI9_120
OrganismArabidopsis thaliana (Mouse-ear cress) [Reference proteome]
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis

Protein attributes

Sequence length124 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Belongs to the ribosomal protein S10P family.

Sequence caution

The sequence BAA97194.1 differs from that shown. Reason: Erroneous initiation.

The sequence CAB89318.1 differs from that shown. Reason: Erroneous initiation.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 12412440S ribosomal protein S20-1 HAMAP-Rule MF_00508
PRO_0000146688

Experimental info

Sequence conflict251I → L in CAA81578. Ref.6
Sequence conflict311S → P in CAA81329. Ref.6
Sequence conflict351K → N in CAA81186. Ref.6
Sequence conflict361N → I in CAA81578. Ref.6
Sequence conflict451V → A in CAA81578. Ref.6
Sequence conflict561K → M in CAA81578. Ref.6
Sequence conflict771E → D in CAA81578. Ref.6
Sequence conflict97 – 10812FSSPD…KQITS → SALLMWSTRSV in CAA81186. Ref.6
Sequence conflict971F → H in CAA81578. Ref.6
Sequence conflict1081S → P in CAA81578. Ref.6
Sequence conflict1241S → A in CAA81578. Ref.6

Sequences

Sequence LengthMass (Da)Tools
P49200 [UniParc].

Last modified June 20, 2002. Version 2.
Checksum: CBAA848100E1BFD2

FASTA12413,878
        10         20         30         40         50         60 
MATAYQPMKP GKAGLEEPLE QIHKIRITLS SKNVKNLEKV CTDLVRGAKD KRLRVKGPVR 

        70         80         90        100        110        120 
MPTKVLKITT RKAPCGEGTN TWDRFELRVH KRVIDLFSSP DVVKQITSIT IEPGVEVEVT 


IADS 

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References

« Hide 'large scale' references
[1]"Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana."
Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F. expand/collapse author list , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
Nature 408:820-822(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA] (AT3G45030).
Strain: cv. Columbia.
[2]"Structural analysis of Arabidopsis thaliana chromosome 5. X. Sequence features of the regions of 3,076,755 bp covered by sixty P1 and TAC clones."
Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Kotani H., Tabata S.
DNA Res. 7:31-63(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA] (AT5G62300).
Strain: cv. Columbia.
[3]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Columbia.
[4]"Empirical analysis of transcriptional activity in the Arabidopsis genome."
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. expand/collapse author list , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (AT3G45030 AND AT5G62300).
Strain: cv. Columbia.
[5]"Full-length cDNA from Arabidopsis thaliana."
Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A.
Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (AT5G62300).
[6]"Further progress towards a catalogue of all Arabidopsis genes: analysis of a set of 5000 non-redundant ESTs."
Cooke R., Raynal M., Laudie M., Grellet F., Delseny M., Morris P.-C., Guerrier D., Giraudat J., Quigley F., Clabault G., Li Y.-F., Mache R., Krivitzky M., Gy I.J.-J., Kreis M., Lecharny A., Parmentier Y., Marbach J. expand/collapse author list , Fleck J., Clement B., Philipps G., Herve C., Bardet C., Tremousaygue D., Lescure B., Lacomme C., Roby D., Jourjon M.-F., Chabrier P., Charpenteau J.-L., Desprez T., Amselem J., Chiapello H., Hoefte H.
Plant J. 9:101-124(1996) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Columbia.
Tissue: Dry seed and Seedling.
[7]"The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome."
Barakat A., Szick-Miranda K., Chang I.-F., Guyot R., Blanc G., Cooke R., Delseny M., Bailey-Serres J.
Plant Physiol. 127:398-415(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: GENE FAMILY ORGANIZATION, NOMENCLATURE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AL353992 Genomic DNA. Translation: CAB89318.1. Different initiation.
AB019235 Genomic DNA. Translation: BAA97194.1. Different initiation.
CP002686 Genomic DNA. Translation: AEE77981.1.
CP002688 Genomic DNA. Translation: AED97593.1.
CP002688 Genomic DNA. Translation: AED97594.1.
AF325017 mRNA. Translation: AAG40369.1.
AF370460 mRNA. Translation: AAK43837.1.
AY096646 mRNA. Translation: AAM20143.1.
AY114024 mRNA. Translation: AAM45072.1.
AY085673 mRNA. Translation: AAM62892.1.
Z27060 mRNA. Translation: CAA81578.1.
Z26188 mRNA. Translation: CAA81186.1.
Z26558 mRNA. Translation: CAA81329.1.
RefSeqNP_001078781.1. NM_001085312.1.
NP_190089.2. NM_114372.5.
NP_201036.1. NM_125624.3.
UniGeneAt.1758.
At.23495.

3D structure databases

ProteinModelPortalP49200.
SMRP49200. Positions 7-123.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

BioGrid21595. 2 interactions.
8958. 2 interactions.

Proteomic databases

PaxDbP49200.
PRIDEP49200.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT3G45030.1; AT3G45030.1; AT3G45030.
AT5G62300.1; AT5G62300.1; AT5G62300.
AT5G62300.2; AT5G62300.2; AT5G62300.
GeneID823638.
836351.
KEGGath:AT3G45030.
ath:AT5G62300.

Organism-specific databases

GeneFarm916. 71.
926. 71.
TAIRAT3G45030.
AT5G62300.

Phylogenomic databases

eggNOGCOG0051.
HOGENOMHOG000270245.
InParanoidP49200.
KOK02969.
OMAYELKIHK.
PhylomeDBP49200.
ProtClustDBCLSN2685167.

Gene expression databases

GenevestigatorP49200.

Family and domain databases

Gene3D3.30.70.600. 1 hit.
HAMAPMF_00508. Ribosomal_S10.
InterProIPR001848. Ribosomal_S10.
IPR018268. Ribosomal_S10_CS.
IPR027486. Ribosomal_S10_dom.
IPR005729. Ribosomal_S10_euk/arc.
[Graphical view]
PANTHERPTHR11700. PTHR11700. 1 hit.
PfamPF00338. Ribosomal_S10. 1 hit.
[Graphical view]
PRINTSPR00971. RIBOSOMALS10.
SUPFAMSSF54999. SSF54999. 1 hit.
TIGRFAMsTIGR01046. S10_Arc_S20_Euk. 1 hit.
PROSITEPS00361. RIBOSOMAL_S10. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRS201_ARATH
AccessionPrimary (citable) accession number: P49200
Secondary accession number(s): Q42168, Q9FPI1, Q9LDG8
Entry history
Integrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: June 20, 2002
Last modified: April 16, 2014
This is version 108 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries

Arabidopsis thaliana

Arabidopsis thaliana: entries and gene names