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Protein

40S ribosomal protein S20-1

Gene

RPS20A

more
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  • mRNA binding Source: TAIR
  • structural constituent of ribosome Source: CAFA

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-ATH-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-ATH-1799339 SRP-dependent cotranslational protein targeting to membrane
R-ATH-72689 Formation of a pool of free 40S subunits
R-ATH-72695 Formation of the ternary complex, and subsequently, the 43S complex
R-ATH-72702 Ribosomal scanning and start codon recognition
R-ATH-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-ATH-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-ATH-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S20-1
Gene namesi
Name:RPS20A
Ordered Locus Names:At3g45030
ORF Names:F14D17_100
AND
Name:RPS20C
Ordered Locus Names:At5g62300
ORF Names:MMI9.13, MMI9_120
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componentsi: Chromosome 3, Chromosome 5

Organism-specific databases

AraportiAT3G45030
AT5G62300
TAIRilocus:2075949 AT3G45030
locus:2167938 AT5G62300

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001466881 – 12440S ribosomal protein S20-1Add BLAST124

Proteomic databases

PaxDbiP49200
PRIDEiP49200

Expressioni

Gene expression databases

ExpressionAtlasiP49200 baseline and differential
GenevisibleiP49200 AT

Interactioni

Protein-protein interaction databases

BioGridi21595, 5 interactors
8958, 2 interactors
STRINGi3702.AT5G62300.1

Structurei

3D structure databases

ProteinModelPortaliP49200
SMRiP49200
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG0900 Eukaryota
COG0051 LUCA
HOGENOMiHOG000270245
InParanoidiP49200
KOiK02969
OMAiWDRYELK
OrthoDBiEOG09360SM2
PhylomeDBiP49200

Family and domain databases

Gene3Di3.30.70.600, 1 hit
HAMAPiMF_00508 Ribosomal_S10, 1 hit
InterProiView protein in InterPro
IPR001848 Ribosomal_S10
IPR018268 Ribosomal_S10_CS
IPR027486 Ribosomal_S10_dom
IPR036838 Ribosomal_S10_dom_sf
IPR005729 Ribosomal_S10_euk/arc
PANTHERiPTHR11700 PTHR11700, 1 hit
PfamiView protein in Pfam
PF00338 Ribosomal_S10, 1 hit
PRINTSiPR00971 RIBOSOMALS10
SMARTiView protein in SMART
SM01403 Ribosomal_S10, 1 hit
SUPFAMiSSF54999 SSF54999, 1 hit
TIGRFAMsiTIGR01046 uS10_euk_arch, 1 hit
PROSITEiView protein in PROSITE
PS00361 RIBOSOMAL_S10, 1 hit

Sequencei

Sequence statusi: Complete.

P49200-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATAYQPMKP GKAGLEEPLE QIHKIRITLS SKNVKNLEKV CTDLVRGAKD
60 70 80 90 100
KRLRVKGPVR MPTKVLKITT RKAPCGEGTN TWDRFELRVH KRVIDLFSSP
110 120
DVVKQITSIT IEPGVEVEVT IADS
Length:124
Mass (Da):13,878
Last modified:June 20, 2002 - v2
Checksum:iCBAA848100E1BFD2
GO

Sequence cautioni

The sequence BAA97194 differs from that shown. Reason: Erroneous initiation.Curated
The sequence CAB89318 differs from that shown. Reason: Erroneous initiation.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti25I → L in CAA81578 (PubMed:8580968).Curated1
Sequence conflicti31S → P in CAA81329 (PubMed:8580968).Curated1
Sequence conflicti35K → N in CAA81186 (PubMed:8580968).Curated1
Sequence conflicti36N → I in CAA81578 (PubMed:8580968).Curated1
Sequence conflicti45V → A in CAA81578 (PubMed:8580968).Curated1
Sequence conflicti56K → M in CAA81578 (PubMed:8580968).Curated1
Sequence conflicti77E → D in CAA81578 (PubMed:8580968).Curated1
Sequence conflicti97 – 108FSSPD…KQITS → SALLMWSTRSV in CAA81186 (PubMed:8580968).CuratedAdd BLAST12
Sequence conflicti97F → H in CAA81578 (PubMed:8580968).Curated1
Sequence conflicti108S → P in CAA81578 (PubMed:8580968).Curated1
Sequence conflicti124S → A in CAA81578 (PubMed:8580968).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL353992 Genomic DNA Translation: CAB89318.1 Different initiation.
AB019235 Genomic DNA Translation: BAA97194.1 Different initiation.
CP002686 Genomic DNA Translation: AEE77981.1
CP002688 Genomic DNA Translation: AED97593.1
CP002688 Genomic DNA Translation: AED97594.1
AF325017 mRNA Translation: AAG40369.1
AF370460 mRNA Translation: AAK43837.1
AY096646 mRNA Translation: AAM20143.1
AY114024 mRNA Translation: AAM45072.1
AY085673 mRNA Translation: AAM62892.1
Z27060 mRNA Translation: CAA81578.1
Z26188 mRNA Translation: CAA81186.1
Z26558 mRNA Translation: CAA81329.1
RefSeqiNP_001078781.1, NM_001085312.1
NP_190089.2, NM_114372.6
NP_201036.1, NM_125624.4
UniGeneiAt.1758
At.23495

Genome annotation databases

EnsemblPlantsiAT3G45030.1; AT3G45030.1; AT3G45030
AT5G62300.1; AT5G62300.1; AT5G62300
AT5G62300.2; AT5G62300.2; AT5G62300
GeneIDi823638
836351
GrameneiAT3G45030.1; AT3G45030.1; AT3G45030
AT5G62300.1; AT5G62300.1; AT5G62300
AT5G62300.2; AT5G62300.2; AT5G62300
KEGGiath:AT3G45030
ath:AT5G62300

Similar proteinsi

Entry informationi

Entry nameiRS201_ARATH
AccessioniPrimary (citable) accession number: P49200
Secondary accession number(s): Q42168, Q9FPI1, Q9LDG8
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: June 20, 2002
Last modified: April 25, 2018
This is version 139 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health