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P49200

- RS201_ARATH

UniProt

P49200 - RS201_ARATH

Protein

40S ribosomal protein S20-1

Gene

RPS20A

more
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli
  1. Functioni

    GO - Molecular functioni

    1. RNA binding Source: InterPro
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Enzyme and pathway databases

    ReactomeiREACT_187631. SRP-dependent cotranslational protein targeting to membrane.
    REACT_187829. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
    REACT_190931. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    40S ribosomal protein S20-1
    Gene namesi
    Name:RPS20A
    Ordered Locus Names:At3g45030
    ORF Names:F14D17_100
    AND
    Name:RPS20C
    Ordered Locus Names:At5g62300
    ORF Names:MMI9.13, MMI9_120
    OrganismiArabidopsis thaliana (Mouse-ear cress)
    Taxonomic identifieri3702 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
    ProteomesiUP000006548: Chromosome 3, UP000006548: Chromosome 5

    Organism-specific databases

    TAIRiAT3G45030.
    AT5G62300.

    Subcellular locationi

    GO - Cellular componenti

    1. cell wall Source: TAIR
    2. cytosol Source: TAIR
    3. cytosolic small ribosomal subunit Source: TAIR

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 12412440S ribosomal protein S20-1PRO_0000146688Add
    BLAST

    Proteomic databases

    PaxDbiP49200.
    PRIDEiP49200.

    Expressioni

    Gene expression databases

    GenevestigatoriP49200.

    Interactioni

    Protein-protein interaction databases

    BioGridi21595. 5 interactions.
    8958. 2 interactions.

    Structurei

    3D structure databases

    ProteinModelPortaliP49200.
    SMRiP49200. Positions 7-123.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein S10P family.Curated

    Phylogenomic databases

    eggNOGiCOG0051.
    HOGENOMiHOG000270245.
    InParanoidiP49200.
    KOiK02969.
    OMAiERQNIRI.
    PhylomeDBiP49200.

    Family and domain databases

    Gene3Di3.30.70.600. 1 hit.
    HAMAPiMF_00508. Ribosomal_S10.
    InterProiIPR001848. Ribosomal_S10.
    IPR018268. Ribosomal_S10_CS.
    IPR027486. Ribosomal_S10_dom.
    IPR005729. Ribosomal_S10_euk/arc.
    [Graphical view]
    PANTHERiPTHR11700. PTHR11700. 1 hit.
    PfamiPF00338. Ribosomal_S10. 1 hit.
    [Graphical view]
    PRINTSiPR00971. RIBOSOMALS10.
    SUPFAMiSSF54999. SSF54999. 1 hit.
    TIGRFAMsiTIGR01046. S10_Arc_S20_Euk. 1 hit.
    PROSITEiPS00361. RIBOSOMAL_S10. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P49200-1 [UniParc]FASTAAdd to Basket

    « Hide

    MATAYQPMKP GKAGLEEPLE QIHKIRITLS SKNVKNLEKV CTDLVRGAKD    50
    KRLRVKGPVR MPTKVLKITT RKAPCGEGTN TWDRFELRVH KRVIDLFSSP 100
    DVVKQITSIT IEPGVEVEVT IADS 124
    Length:124
    Mass (Da):13,878
    Last modified:June 20, 2002 - v2
    Checksum:iCBAA848100E1BFD2
    GO

    Sequence cautioni

    The sequence BAA97194.1 differs from that shown. Reason: Erroneous initiation.
    The sequence CAB89318.1 differs from that shown. Reason: Erroneous initiation.

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti25 – 251I → L in CAA81578. (PubMed:8580968)Curated
    Sequence conflicti31 – 311S → P in CAA81329. (PubMed:8580968)Curated
    Sequence conflicti35 – 351K → N in CAA81186. (PubMed:8580968)Curated
    Sequence conflicti36 – 361N → I in CAA81578. (PubMed:8580968)Curated
    Sequence conflicti45 – 451V → A in CAA81578. (PubMed:8580968)Curated
    Sequence conflicti56 – 561K → M in CAA81578. (PubMed:8580968)Curated
    Sequence conflicti77 – 771E → D in CAA81578. (PubMed:8580968)Curated
    Sequence conflicti97 – 10812FSSPD…KQITS → SALLMWSTRSV in CAA81186. (PubMed:8580968)CuratedAdd
    BLAST
    Sequence conflicti97 – 971F → H in CAA81578. (PubMed:8580968)Curated
    Sequence conflicti108 – 1081S → P in CAA81578. (PubMed:8580968)Curated
    Sequence conflicti124 – 1241S → A in CAA81578. (PubMed:8580968)Curated

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL353992 Genomic DNA. Translation: CAB89318.1. Different initiation.
    AB019235 Genomic DNA. Translation: BAA97194.1. Different initiation.
    CP002686 Genomic DNA. Translation: AEE77981.1.
    CP002688 Genomic DNA. Translation: AED97593.1.
    CP002688 Genomic DNA. Translation: AED97594.1.
    AF325017 mRNA. Translation: AAG40369.1.
    AF370460 mRNA. Translation: AAK43837.1.
    AY096646 mRNA. Translation: AAM20143.1.
    AY114024 mRNA. Translation: AAM45072.1.
    AY085673 mRNA. Translation: AAM62892.1.
    Z27060 mRNA. Translation: CAA81578.1.
    Z26188 mRNA. Translation: CAA81186.1.
    Z26558 mRNA. Translation: CAA81329.1.
    RefSeqiNP_001078781.1. NM_001085312.1.
    NP_190089.2. NM_114372.5.
    NP_201036.1. NM_125624.3.
    UniGeneiAt.1758.
    At.23495.

    Genome annotation databases

    EnsemblPlantsiAT3G45030.1; AT3G45030.1; AT3G45030.
    AT5G62300.1; AT5G62300.1; AT5G62300.
    AT5G62300.2; AT5G62300.2; AT5G62300.
    GeneIDi823638.
    836351.
    KEGGiath:AT3G45030.
    ath:AT5G62300.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL353992 Genomic DNA. Translation: CAB89318.1 . Different initiation.
    AB019235 Genomic DNA. Translation: BAA97194.1 . Different initiation.
    CP002686 Genomic DNA. Translation: AEE77981.1 .
    CP002688 Genomic DNA. Translation: AED97593.1 .
    CP002688 Genomic DNA. Translation: AED97594.1 .
    AF325017 mRNA. Translation: AAG40369.1 .
    AF370460 mRNA. Translation: AAK43837.1 .
    AY096646 mRNA. Translation: AAM20143.1 .
    AY114024 mRNA. Translation: AAM45072.1 .
    AY085673 mRNA. Translation: AAM62892.1 .
    Z27060 mRNA. Translation: CAA81578.1 .
    Z26188 mRNA. Translation: CAA81186.1 .
    Z26558 mRNA. Translation: CAA81329.1 .
    RefSeqi NP_001078781.1. NM_001085312.1.
    NP_190089.2. NM_114372.5.
    NP_201036.1. NM_125624.3.
    UniGenei At.1758.
    At.23495.

    3D structure databases

    ProteinModelPortali P49200.
    SMRi P49200. Positions 7-123.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 21595. 5 interactions.
    8958. 2 interactions.

    Proteomic databases

    PaxDbi P49200.
    PRIDEi P49200.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi AT3G45030.1 ; AT3G45030.1 ; AT3G45030 .
    AT5G62300.1 ; AT5G62300.1 ; AT5G62300 .
    AT5G62300.2 ; AT5G62300.2 ; AT5G62300 .
    GeneIDi 823638.
    836351.
    KEGGi ath:AT3G45030.
    ath:AT5G62300.

    Organism-specific databases

    GeneFarmi 916. 71.
    926. 71.
    TAIRi AT3G45030.
    AT5G62300.

    Phylogenomic databases

    eggNOGi COG0051.
    HOGENOMi HOG000270245.
    InParanoidi P49200.
    KOi K02969.
    OMAi ERQNIRI.
    PhylomeDBi P49200.

    Enzyme and pathway databases

    Reactomei REACT_187631. SRP-dependent cotranslational protein targeting to membrane.
    REACT_187829. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
    REACT_190931. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).

    Gene expression databases

    Genevestigatori P49200.

    Family and domain databases

    Gene3Di 3.30.70.600. 1 hit.
    HAMAPi MF_00508. Ribosomal_S10.
    InterProi IPR001848. Ribosomal_S10.
    IPR018268. Ribosomal_S10_CS.
    IPR027486. Ribosomal_S10_dom.
    IPR005729. Ribosomal_S10_euk/arc.
    [Graphical view ]
    PANTHERi PTHR11700. PTHR11700. 1 hit.
    Pfami PF00338. Ribosomal_S10. 1 hit.
    [Graphical view ]
    PRINTSi PR00971. RIBOSOMALS10.
    SUPFAMi SSF54999. SSF54999. 1 hit.
    TIGRFAMsi TIGR01046. S10_Arc_S20_Euk. 1 hit.
    PROSITEi PS00361. RIBOSOMAL_S10. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana."
      Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F.
      , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
      Nature 408:820-822(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA] (AT3G45030).
      Strain: cv. Columbia.
    2. "Structural analysis of Arabidopsis thaliana chromosome 5. X. Sequence features of the regions of 3,076,755 bp covered by sixty P1 and TAC clones."
      Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Kotani H., Tabata S.
      DNA Res. 7:31-63(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA] (AT5G62300).
      Strain: cv. Columbia.
    3. The Arabidopsis Information Resource (TAIR)
      Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: GENOME REANNOTATION.
      Strain: cv. Columbia.
    4. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
      Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
      , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
      Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (AT3G45030 AND AT5G62300).
      Strain: cv. Columbia.
    5. "Full-length cDNA from Arabidopsis thaliana."
      Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A.
      Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (AT5G62300).
    6. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Columbia.
      Tissue: Dry seed and Seedling.
    7. "The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome."
      Barakat A., Szick-Miranda K., Chang I.-F., Guyot R., Blanc G., Cooke R., Delseny M., Bailey-Serres J.
      Plant Physiol. 127:398-415(2001) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENE FAMILY ORGANIZATION, NOMENCLATURE.

    Entry informationi

    Entry nameiRS201_ARATH
    AccessioniPrimary (citable) accession number: P49200
    Secondary accession number(s): Q42168, Q9FPI1, Q9LDG8
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 1, 1996
    Last sequence update: June 20, 2002
    Last modified: October 1, 2014
    This is version 112 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Arabidopsis thaliana
      Arabidopsis thaliana: entries and gene names
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3