Reviewed, UniProtKB/Swiss-Prot P49200 (RS201_ARATH)

Names and origin

Protein names

Recommended name:
    40S ribosomal protein S20-1

Gene names

Name:	RPS20A
Ordered Locus Names:	At3g45030
ORF Names:	F14D17_100
AND
Name:	RPS20C
Ordered Locus Names:	At5g62300
ORF Names:	MMI9.13, MMI9_120

Organism

Arabidopsis thaliana (Mouse-ear cress) [Complete proteome]

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › eurosids II › Brassicales › Brassicaceae › Arabidopsis

Protein attributes

Sequence length	124 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at protein level.

General annotation (Comments)

Sequence similarities

Belongs to the ribosomal protein S10P family.

Ontologies

Keywords
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: InterPro
Cellular component	cell wall Inferred from direct assay. Source: TAIR cytosolic small ribosomal subunit Inferred from direct assay. Source: TAIR
Molecular function	RNA binding Inferred from electronic annotation. Source: InterPro structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 124	124	40S ribosomal protein S20-1		PRO_0000146688
Experimental info
	Sequence conflict	25	1	I → L in CAA81578. Ref.5
	Sequence conflict	31	1	S → P in CAA81329. Ref.5
	Sequence conflict	35	1	K → N in CAA81186. Ref.5
	Sequence conflict	36	1	N → I in CAA81578. Ref.5
	Sequence conflict	45	1	V → A in CAA81578. Ref.5
	Sequence conflict	56	1	K → M in CAA81578. Ref.5
	Sequence conflict	77	1	E → D in CAA81578. Ref.5
	Sequence conflict	97 – 108	12	FSSPD…KQITS → SALLMWSTRSV in CAA81186. Ref.5
	Sequence conflict	97	1	F → H in CAA81578. Ref.5
	Sequence conflict	108	1	S → P in CAA81578. Ref.5
	Sequence conflict	124	1	S → A in CAA81578. Ref.5

Sequences

	Sequence		Length	Mass (Da)
	P49200-1 [UniParc]. Last modified June 20, 2002. Version 2. Checksum: CBAA848100E1BFD2	FASTA	124	13,878
	10 20 30 40 50 60 MATAYQPMKP GKAGLEEPLE QIHKIRITLS SKNVKNLEKV CTDLVRGAKD KRLRVKGPVR 70 80 90 100 110 120 MPTKVLKITT RKAPCGEGTN TWDRFELRVH KRVIDLFSSP DVVKQITSIT IEPGVEVEVT IADS

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana." Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F. , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S. Nature 408:820-822(2000) [PubMed: 11130713] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA] (AT3G45030). Strain: cv. Columbia.
[2]	"Structural analysis of Arabidopsis thaliana chromosome 5. X. Sequence features of the regions of 3,076,755 bp covered by sixty P1 and TAC clones." Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Kotani H., Tabata S. DNA Res. 7:31-63(2000) [PubMed: 10718197] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA] (AT5G62300). Strain: cv. Columbia.
[3]	"Empirical analysis of transcriptional activity in the Arabidopsis genome." Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R. Science 302:842-846(2003) [PubMed: 14593172] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (AT3G45030 AND AT5G62300). Strain: cv. Columbia.
[4]	"Full-length cDNA from Arabidopsis thaliana." Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A. Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (AT5G62300).
[5]	"Further progress towards a catalogue of all Arabidopsis genes: analysis of a set of 5000 non-redundant ESTs." Cooke R., Raynal M., Laudie M., Grellet F., Delseny M., Morris P.-C., Guerrier D., Giraudat J., Quigley F., Clabault G., Li Y.-F., Mache R., Krivitzky M., Gy I.J.-J., Kreis M., Lecharny A., Parmentier Y., Marbach J. , Fleck J., Clement B., Philipps G., Herve C., Bardet C., Tremousaygue D., Lescure B., Lacomme C., Roby D., Jourjon M.-F., Chabrier P., Charpenteau J.-L., Desprez T., Amselem J., Chiapello H., Hoefte H. Plant J. 9:101-124(1996) [PubMed: 8580968] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: cv. Columbia. Tissue: Dry seed and Seedling.
[6]	"The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome." Barakat A., Szick-Miranda K., Chang I.-F., Guyot R., Blanc G., Cooke R., Delseny M., Bailey-Serres J. Plant Physiol. 127:398-415(2001) [PubMed: 11598216] [Abstract] Cited for: GENE FAMILY ORGANIZATION, NOMENCLATURE.

Cross-references

Sequence databases
EMBLGenBankDDBJ	AL353992 Genomic DNA. Translation: CAB89318.1. Different initiation. AB019235 Genomic DNA. Translation: BAA97194.1. Different initiation. AF325017 mRNA. Translation: AAG40369.1. AF370460 mRNA. Translation: AAK43837.1. AY096646 mRNA. Translation: AAM20143.1. AY114024 mRNA. Translation: AAM45072.1. AY085673 mRNA. Translation: AAM62892.1. Z27060 mRNA. Translation: CAA81578.1. Z26188 mRNA. Translation: CAA81186.1. Z26558 mRNA. Translation: CAA81329.1.
IPI	IPI00527199.
RefSeq	NP_001078781.1. NP_190089.2. NP_201036.1.
UniGene	At.1758 At.23495
3D structure databases
ModBase	Search...
Proteomic databases
PRIDE	P49200.
ProMEX	P49200.
Genome annotation databases
GeneID	823638. 836351.
GenomeReviews	Gene locus AT3G45030 in contig BA000014_GR. Gene locus AT5G62300 in contig BA000015_GR.
KEGG	ath:AT3G45030. ath:AT5G62300.
Organism-specific databases
GeneFarm	916. 71. 926. 71.
TAIR	At3g45030. At5g62300.
Phylogenomic databases
OMA	P49200. YEMRIHK.
Gene expression databases
ArrayExpress	P49200.
GermOnline	AT3G45030. Arabidopsis thaliana.
Family and domain databases
InterPro	IPR001848. Ribosomal_S10. IPR018268. Ribosomal_S10_CS. IPR005729. Ribosomal_S10_euk/arc. [Graphical view]
Gene3D	G3DSA:3.30.70.600. Ribosomal_S10. 1 hit.
PANTHER	PTHR11700. Ribosomal_S10. 1 hit.
Pfam	PF00338. Ribosomal_S10. 1 hit. [Graphical view]
PRINTS	PR00971. RIBOSOMALS10.
ProDom	PD001272. Ribosomal_S10. 1 hit. [Graphical view] [Entries sharing at least one domain]
TIGRFAMs	TIGR01046. S10_Arc_S20_Euk. 1 hit.
PROSITE	PS00361. RIBOSOMAL_S10. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RS201_ARATH

Accession

Primary (citable) accession number: P49200
Secondary accession number(s): Q42168, Q9FPI1, Q9LDG8

Entry history

Integrated into UniProtKB/Swiss-Prot:	February 1, 1996
Last sequence update:	June 20, 2002
Last modified:	June 16, 2009
This is version 72 of the entry and version 2 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

PPAP (Plant Proteome Annotation Project)