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Protein

40S ribosomal protein S20-1

Gene

RPS20A

more
Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. RNA binding Source: InterPro
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiREACT_283587. Eukaryotic Translation Termination.
REACT_284557. Peptide chain elongation.
REACT_300607. SRP-dependent cotranslational protein targeting to membrane.
REACT_301375. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_302829. Ribosomal scanning and start codon recognition.
REACT_304489. GTP hydrolysis and joining of the 60S ribosomal subunit.
REACT_310661. L13a-mediated translational silencing of Ceruloplasmin expression.
REACT_312375. Formation of a pool of free 40S subunits.
REACT_319752. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
REACT_325381. Formation of the ternary complex, and subsequently, the 43S complex.

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S20-1
Gene namesi
Name:RPS20A
Ordered Locus Names:At3g45030
ORF Names:F14D17_100
AND
Name:RPS20C
Ordered Locus Names:At5g62300
ORF Names:MMI9.13, MMI9_120
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548 Componentsi: Chromosome 3, Chromosome 5

Organism-specific databases

TAIRiAT3G45030.
AT5G62300.

Subcellular locationi

GO - Cellular componenti

  1. cell wall Source: TAIR
  2. cytosol Source: TAIR
  3. cytosolic small ribosomal subunit Source: TAIR
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 12412440S ribosomal protein S20-1PRO_0000146688Add
BLAST

Proteomic databases

PaxDbiP49200.
PRIDEiP49200.

Expressioni

Gene expression databases

ExpressionAtlasiP49200. baseline.
GenevestigatoriP49200.

Interactioni

Protein-protein interaction databases

BioGridi21595. 5 interactions.
8958. 2 interactions.

Structurei

3D structure databases

SMRiP49200. Positions 7-123.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S10P family.Curated

Phylogenomic databases

eggNOGiCOG0051.
HOGENOMiHOG000270245.
InParanoidiP49200.
KOiK02969.
OMAiYQPMKPG.
PhylomeDBiP49200.

Family and domain databases

Gene3Di3.30.70.600. 1 hit.
HAMAPiMF_00508. Ribosomal_S10.
InterProiIPR001848. Ribosomal_S10.
IPR018268. Ribosomal_S10_CS.
IPR027486. Ribosomal_S10_dom.
IPR005729. Ribosomal_S10_euk/arc.
[Graphical view]
PANTHERiPTHR11700. PTHR11700. 1 hit.
PfamiPF00338. Ribosomal_S10. 1 hit.
[Graphical view]
PRINTSiPR00971. RIBOSOMALS10.
SUPFAMiSSF54999. SSF54999. 1 hit.
TIGRFAMsiTIGR01046. uS10_euk_arch. 1 hit.
PROSITEiPS00361. RIBOSOMAL_S10. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P49200-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATAYQPMKP GKAGLEEPLE QIHKIRITLS SKNVKNLEKV CTDLVRGAKD
60 70 80 90 100
KRLRVKGPVR MPTKVLKITT RKAPCGEGTN TWDRFELRVH KRVIDLFSSP
110 120
DVVKQITSIT IEPGVEVEVT IADS
Length:124
Mass (Da):13,878
Last modified:June 20, 2002 - v2
Checksum:iCBAA848100E1BFD2
GO

Sequence cautioni

The sequence BAA97194.1 differs from that shown. Reason: Erroneous initiation. Curated
The sequence CAB89318.1 differs from that shown. Reason: Erroneous initiation. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti25 – 251I → L in CAA81578 (PubMed:8580968).Curated
Sequence conflicti31 – 311S → P in CAA81329 (PubMed:8580968).Curated
Sequence conflicti35 – 351K → N in CAA81186 (PubMed:8580968).Curated
Sequence conflicti36 – 361N → I in CAA81578 (PubMed:8580968).Curated
Sequence conflicti45 – 451V → A in CAA81578 (PubMed:8580968).Curated
Sequence conflicti56 – 561K → M in CAA81578 (PubMed:8580968).Curated
Sequence conflicti77 – 771E → D in CAA81578 (PubMed:8580968).Curated
Sequence conflicti97 – 10812FSSPD…KQITS → SALLMWSTRSV in CAA81186 (PubMed:8580968).CuratedAdd
BLAST
Sequence conflicti97 – 971F → H in CAA81578 (PubMed:8580968).Curated
Sequence conflicti108 – 1081S → P in CAA81578 (PubMed:8580968).Curated
Sequence conflicti124 – 1241S → A in CAA81578 (PubMed:8580968).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL353992 Genomic DNA. Translation: CAB89318.1. Different initiation.
AB019235 Genomic DNA. Translation: BAA97194.1. Different initiation.
CP002686 Genomic DNA. Translation: AEE77981.1.
CP002688 Genomic DNA. Translation: AED97593.1.
CP002688 Genomic DNA. Translation: AED97594.1.
AF325017 mRNA. Translation: AAG40369.1.
AF370460 mRNA. Translation: AAK43837.1.
AY096646 mRNA. Translation: AAM20143.1.
AY114024 mRNA. Translation: AAM45072.1.
AY085673 mRNA. Translation: AAM62892.1.
Z27060 mRNA. Translation: CAA81578.1.
Z26188 mRNA. Translation: CAA81186.1.
Z26558 mRNA. Translation: CAA81329.1.
RefSeqiNP_001078781.1. NM_001085312.1.
NP_190089.2. NM_114372.5.
NP_201036.1. NM_125624.3.
UniGeneiAt.1758.
At.23495.

Genome annotation databases

EnsemblPlantsiAT3G45030.1; AT3G45030.1; AT3G45030.
AT5G62300.1; AT5G62300.1; AT5G62300.
AT5G62300.2; AT5G62300.2; AT5G62300.
GeneIDi823638.
836351.
KEGGiath:AT3G45030.
ath:AT5G62300.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL353992 Genomic DNA. Translation: CAB89318.1. Different initiation.
AB019235 Genomic DNA. Translation: BAA97194.1. Different initiation.
CP002686 Genomic DNA. Translation: AEE77981.1.
CP002688 Genomic DNA. Translation: AED97593.1.
CP002688 Genomic DNA. Translation: AED97594.1.
AF325017 mRNA. Translation: AAG40369.1.
AF370460 mRNA. Translation: AAK43837.1.
AY096646 mRNA. Translation: AAM20143.1.
AY114024 mRNA. Translation: AAM45072.1.
AY085673 mRNA. Translation: AAM62892.1.
Z27060 mRNA. Translation: CAA81578.1.
Z26188 mRNA. Translation: CAA81186.1.
Z26558 mRNA. Translation: CAA81329.1.
RefSeqiNP_001078781.1. NM_001085312.1.
NP_190089.2. NM_114372.5.
NP_201036.1. NM_125624.3.
UniGeneiAt.1758.
At.23495.

3D structure databases

SMRiP49200. Positions 7-123.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi21595. 5 interactions.
8958. 2 interactions.

Proteomic databases

PaxDbiP49200.
PRIDEiP49200.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G45030.1; AT3G45030.1; AT3G45030.
AT5G62300.1; AT5G62300.1; AT5G62300.
AT5G62300.2; AT5G62300.2; AT5G62300.
GeneIDi823638.
836351.
KEGGiath:AT3G45030.
ath:AT5G62300.

Organism-specific databases

GeneFarmi916. 71.
926. 71.
TAIRiAT3G45030.
AT5G62300.

Phylogenomic databases

eggNOGiCOG0051.
HOGENOMiHOG000270245.
InParanoidiP49200.
KOiK02969.
OMAiYQPMKPG.
PhylomeDBiP49200.

Enzyme and pathway databases

ReactomeiREACT_283587. Eukaryotic Translation Termination.
REACT_284557. Peptide chain elongation.
REACT_300607. SRP-dependent cotranslational protein targeting to membrane.
REACT_301375. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_302829. Ribosomal scanning and start codon recognition.
REACT_304489. GTP hydrolysis and joining of the 60S ribosomal subunit.
REACT_310661. L13a-mediated translational silencing of Ceruloplasmin expression.
REACT_312375. Formation of a pool of free 40S subunits.
REACT_319752. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
REACT_325381. Formation of the ternary complex, and subsequently, the 43S complex.

Miscellaneous databases

PROiP49200.

Gene expression databases

ExpressionAtlasiP49200. baseline.
GenevestigatoriP49200.

Family and domain databases

Gene3Di3.30.70.600. 1 hit.
HAMAPiMF_00508. Ribosomal_S10.
InterProiIPR001848. Ribosomal_S10.
IPR018268. Ribosomal_S10_CS.
IPR027486. Ribosomal_S10_dom.
IPR005729. Ribosomal_S10_euk/arc.
[Graphical view]
PANTHERiPTHR11700. PTHR11700. 1 hit.
PfamiPF00338. Ribosomal_S10. 1 hit.
[Graphical view]
PRINTSiPR00971. RIBOSOMALS10.
SUPFAMiSSF54999. SSF54999. 1 hit.
TIGRFAMsiTIGR01046. uS10_euk_arch. 1 hit.
PROSITEiPS00361. RIBOSOMAL_S10. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana."
    Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F.
    , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
    Nature 408:820-822(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA] (AT3G45030).
    Strain: cv. Columbia.
  2. "Structural analysis of Arabidopsis thaliana chromosome 5. X. Sequence features of the regions of 3,076,755 bp covered by sixty P1 and TAC clones."
    Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Kotani H., Tabata S.
    DNA Res. 7:31-63(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA] (AT5G62300).
    Strain: cv. Columbia.
  3. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  4. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (AT3G45030 AND AT5G62300).
    Strain: cv. Columbia.
  5. "Full-length cDNA from Arabidopsis thaliana."
    Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A.
    Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (AT5G62300).
  6. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
    Tissue: Dry seed and Seedling.
  7. "The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome."
    Barakat A., Szick-Miranda K., Chang I.-F., Guyot R., Blanc G., Cooke R., Delseny M., Bailey-Serres J.
    Plant Physiol. 127:398-415(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY ORGANIZATION, NOMENCLATURE.

Entry informationi

Entry nameiRS201_ARATH
AccessioniPrimary (citable) accession number: P49200
Secondary accession number(s): Q42168, Q9FPI1, Q9LDG8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: June 20, 2002
Last modified: April 29, 2015
This is version 117 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.