P49200 (RS201_ARATH) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
40S ribosomal protein S20-1

Gene names

Name:	RPS20A
Ordered Locus Names:	At3g45030
ORF Names:	F14D17_100
AND
Name:	RPS20C
Ordered Locus Names:	At5g62300
ORF Names:	MMI9.13, MMI9_120

Organism

Arabidopsis thaliana (Mouse-ear cress)

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length	124 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Sequence similarities	Belongs to the ribosomal protein S10P family.
Sequence caution	The sequence BAA97194.1 differs from that shown. Reason: Erroneous initiation. The sequence CAB89318.1 differs from that shown. Reason: Erroneous initiation.

Ontologies

Keywords
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: InterPro
Cellular component	cell wall Inferred from direct assay. Source: TAIR cytosolic small ribosomal subunit Inferred from direct assay. Source: TAIR
Molecular function	RNA binding Inferred from electronic annotation. Source: InterPro structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 124	124	40S ribosomal protein S20-1		PRO_0000146688
Experimental info
	Sequence conflict	25	1	I → L in CAA81578. Ref.6
	Sequence conflict	31	1	S → P in CAA81329. Ref.6
	Sequence conflict	35	1	K → N in CAA81186. Ref.6
	Sequence conflict	36	1	N → I in CAA81578. Ref.6
	Sequence conflict	45	1	V → A in CAA81578. Ref.6
	Sequence conflict	56	1	K → M in CAA81578. Ref.6
	Sequence conflict	77	1	E → D in CAA81578. Ref.6
	Sequence conflict	97 – 108	12	FSSPD…KQITS → SALLMWSTRSV in CAA81186. Ref.6
	Sequence conflict	97	1	F → H in CAA81578. Ref.6
	Sequence conflict	108	1	S → P in CAA81578. Ref.6
	Sequence conflict	124	1	S → A in CAA81578. Ref.6

Sequences

	Sequence		Length	Mass (Da)
	P49200 [UniParc]. Last modified June 20, 2002. Version 2. Checksum: CBAA848100E1BFD2	FASTA	124	13,878
	10 20 30 40 50 60 MATAYQPMKP GKAGLEEPLE QIHKIRITLS SKNVKNLEKV CTDLVRGAKD KRLRVKGPVR 70 80 90 100 110 120 MPTKVLKITT RKAPCGEGTN TWDRFELRVH KRVIDLFSSP DVVKQITSIT IEPGVEVEVT IADS

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana." Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F. , Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S. Nature 408:820-822(2000) [PubMed: 11130713] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA] (AT3G45030). Strain: cv. Columbia.
[2]	"Structural analysis of Arabidopsis thaliana chromosome 5. X. Sequence features of the regions of 3,076,755 bp covered by sixty P1 and TAC clones." Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Kotani H., Tabata S. DNA Res. 7:31-63(2000) [PubMed: 10718197] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA] (AT5G62300). Strain: cv. Columbia.
[3]	The Arabidopsis Information Resource (TAIR) Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases Cited for: GENOME REANNOTATION. Strain: cv. Columbia.
[4]	"Empirical analysis of transcriptional activity in the Arabidopsis genome." Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R. Science 302:842-846(2003) [PubMed: 14593172] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (AT3G45030 AND AT5G62300). Strain: cv. Columbia.
[5]	"Full-length cDNA from Arabidopsis thaliana." Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A. Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (AT5G62300).
[6]	"Further progress towards a catalogue of all Arabidopsis genes: analysis of a set of 5000 non-redundant ESTs." Cooke R., Raynal M., Laudie M., Grellet F., Delseny M., Morris P.-C., Guerrier D., Giraudat J., Quigley F., Clabault G., Li Y.-F., Mache R., Krivitzky M., Gy I.J.-J., Kreis M., Lecharny A., Parmentier Y., Marbach J. , Fleck J., Clement B., Philipps G., Herve C., Bardet C., Tremousaygue D., Lescure B., Lacomme C., Roby D., Jourjon M.-F., Chabrier P., Charpenteau J.-L., Desprez T., Amselem J., Chiapello H., Hoefte H. Plant J. 9:101-124(1996) [PubMed: 8580968] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: cv. Columbia. Tissue: Dry seed and Seedling.
[7]	"The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome." Barakat A., Szick-Miranda K., Chang I.-F., Guyot R., Blanc G., Cooke R., Delseny M., Bailey-Serres J. Plant Physiol. 127:398-415(2001) [PubMed: 11598216] [Abstract] Cited for: GENE FAMILY ORGANIZATION, NOMENCLATURE.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AL353992 Genomic DNA. Translation: CAB89318.1. Different initiation. AB019235 Genomic DNA. Translation: BAA97194.1. Different initiation. CP002686 Genomic DNA. Translation: AEE77981.1. CP002688 Genomic DNA. Translation: AED97593.1. CP002688 Genomic DNA. Translation: AED97594.1. AF325017 mRNA. Translation: AAG40369.1. AF370460 mRNA. Translation: AAK43837.1. AY096646 mRNA. Translation: AAM20143.1. AY114024 mRNA. Translation: AAM45072.1. AY085673 mRNA. Translation: AAM62892.1. Z27060 mRNA. Translation: CAA81578.1. Z26188 mRNA. Translation: CAA81186.1. Z26558 mRNA. Translation: CAA81329.1.
IPI	IPI00527199.
RefSeq	NP_001078781.1. NM_001085312.1. NP_190089.2. NM_114372.5. NP_201036.1. NM_125624.3.
UniGene	At.1758. At.23495.
3D structure databases
ProteinModelPortal	P49200.
SMR	P49200. Positions 7-123.
ModBase	Search...
Protein-protein interaction databases
STRING	P49200.
Proteomic databases
PRIDE	P49200.
ProMEX	P49200.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	AT3G45030.1; AT3G45030.1; AT3G45030. AT5G62300.1; AT5G62300.1; AT5G62300. AT5G62300.2; AT5G62300.2; AT5G62300.
GeneID	823638. 836351.
GenomeReviews	Gene locus AT3G45030 in contig BA000014_GR. Gene locus AT5G62300 in contig BA000015_GR.
KEGG	ath:AT3G45030. ath:AT5G62300.
Organism-specific databases
GeneFarm	916. 71. 926. 71.
TAIR	At3g45030. At5g62300.
Phylogenomic databases
eggNOG	KOG0900.
HOGENOM	HBG317444.
InParanoid	P49200.
OMA	YEMRIHK.
PhylomeDB	P49200.
ProtClustDB	CLSN2685167.
Gene expression databases
ArrayExpress	P49200.
Genevestigator	P49200.
GermOnline	AT3G45030. Arabidopsis thaliana.
Family and domain databases
InterPro	IPR001848. Ribosomal_S10. IPR018268. Ribosomal_S10_CS. IPR005729. Ribosomal_S10_euk/arc. [Graphical view]
Gene3D	G3DSA:3.30.70.600. Ribosomal_S10. 1 hit.
KO	K02969.
PANTHER	PTHR11700. Ribosomal_S10. 1 hit.
Pfam	PF00338. Ribosomal_S10. 1 hit. [Graphical view]
PRINTS	PR00971. RIBOSOMALS10.
SUPFAM	SSF54999. Ribosomal_S10. 1 hit.
TIGRFAMs	TIGR01046. S10_Arc_S20_Euk. 1 hit.
PROSITE	PS00361. RIBOSOMAL_S10. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RS201_ARATH

Accession

Primary (citable) accession number: P49200
Secondary accession number(s): Q42168, Q9FPI1, Q9LDG8

Entry history

Integrated into UniProtKB/Swiss-Prot:	February 1, 1996
Last sequence update:	June 20, 2002
Last modified:	November 16, 2011
This is version 91 of the entry and version 2 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Plant Protein Annotation Program