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Protein

60S ribosomal protein L35a

Gene

rpl-33

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L35a
Gene namesi
Name:rpl-33
ORF Names:F10E7.7
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome II

Organism-specific databases

WormBaseiF10E7.7; CE04362; WBGene00004447; rpl-33.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methionineiRemoved1 Publication
Chaini2 – 12412360S ribosomal protein L35aPRO_0000192803Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei2 – 21N-acetylalanine1 Publication

Keywords - PTMi

Acetylation

Proteomic databases

EPDiP49180.
PaxDbiP49180.

PTM databases

iPTMnetiP49180.

Interactioni

Protein-protein interaction databases

STRINGi6239.F10E7.7.1.

Structurei

3D structure databases

ProteinModelPortaliP49180.
SMRiP49180. Positions 15-124.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L35Ae family.Curated

Phylogenomic databases

eggNOGiKOG0887. Eukaryota.
COG2451. LUCA.
GeneTreeiENSGT00390000016972.
HOGENOMiHOG000195636.
InParanoidiP49180.
KOiK02917.
OMAiTRTHGNN.
OrthoDBiEOG741Z4R.
PhylomeDBiP49180.

Family and domain databases

InterProiIPR001780. Ribosomal_L35A.
IPR018266. Ribosomal_L35Ae_CS.
IPR009000. Transl_B-barrel.
[Graphical view]
PANTHERiPTHR10902. PTHR10902. 1 hit.
PfamiPF01247. Ribosomal_L35Ae. 1 hit.
[Graphical view]
ProDomiPD012670. Ribosomal_L35Ae. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF50447. SSF50447. 1 hit.
PROSITEiPS01105. RIBOSOMAL_L35AE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P49180-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MADTAVARRP SAPTTGRLYV KAIFTGFKRG LRTQSEHTSL LKLEGVFNKE
60 70 80 90 100
DAGFYAGKRV VYLYKAHNKT LKTGHTVATR TRAIWGKITR PHGNAGAVRA
110 120
KFHHNIPPSA LGKRIRVLLY PSNI
Length:124
Mass (Da):13,768
Last modified:January 23, 2007 - v3
Checksum:i775114FFC1FA9871
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO081111 Genomic DNA. Translation: CCD69169.1.
PIRiT34207.
RefSeqiNP_495468.1. NM_063067.3.
UniGeneiCel.8345.

Genome annotation databases

EnsemblMetazoaiF10E7.7.1; F10E7.7.1; WBGene00004447.
F10E7.7.2; F10E7.7.2; WBGene00004447.
GeneIDi174166.
KEGGicel:CELE_F10E7.7.
UCSCiF10E7.7.1. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO081111 Genomic DNA. Translation: CCD69169.1.
PIRiT34207.
RefSeqiNP_495468.1. NM_063067.3.
UniGeneiCel.8345.

3D structure databases

ProteinModelPortaliP49180.
SMRiP49180. Positions 15-124.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi6239.F10E7.7.1.

PTM databases

iPTMnetiP49180.

Proteomic databases

EPDiP49180.
PaxDbiP49180.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiF10E7.7.1; F10E7.7.1; WBGene00004447.
F10E7.7.2; F10E7.7.2; WBGene00004447.
GeneIDi174166.
KEGGicel:CELE_F10E7.7.
UCSCiF10E7.7.1. c. elegans.

Organism-specific databases

CTDi174166.
WormBaseiF10E7.7; CE04362; WBGene00004447; rpl-33.

Phylogenomic databases

eggNOGiKOG0887. Eukaryota.
COG2451. LUCA.
GeneTreeiENSGT00390000016972.
HOGENOMiHOG000195636.
InParanoidiP49180.
KOiK02917.
OMAiTRTHGNN.
OrthoDBiEOG741Z4R.
PhylomeDBiP49180.

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

NextBioi882813.
PROiP49180.

Family and domain databases

InterProiIPR001780. Ribosomal_L35A.
IPR018266. Ribosomal_L35Ae_CS.
IPR009000. Transl_B-barrel.
[Graphical view]
PANTHERiPTHR10902. PTHR10902. 1 hit.
PfamiPF01247. Ribosomal_L35Ae. 1 hit.
[Graphical view]
ProDomiPD012670. Ribosomal_L35Ae. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF50447. SSF50447. 1 hit.
PROSITEiPS01105. RIBOSOMAL_L35AE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    The C. elegans sequencing consortium
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2.
  2. Bienvenut W.V.
    Submitted (SEP-2005) to UniProtKB
    Cited for: PROTEIN SEQUENCE OF 2-8; 22-28; 50-58 AND 60-65, IDENTIFICATION BY MASS SPECTROMETRY, ACETYLATION AT ALA-2.

Entry informationi

Entry nameiRL35A_CAEEL
AccessioniPrimary (citable) accession number: P49180
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: January 23, 2007
Last modified: May 11, 2016
This is version 103 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.