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Protein

60S ribosomal protein L37-A

Gene

RPL37A

Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

Binds to the 23S rRNA.By similarity

Cofactori

Zn2+By similarityNote: Binds 1 zinc ion per subunit.By similarity

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi19 – 191ZincBy similarity
Metal bindingi22 – 221ZincBy similarity
Metal bindingi34 – 341ZincBy similarity
Metal bindingi37 – 371ZincBy similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri19 – 3719C4-typeSequence AnalysisAdd
BLAST

GO - Molecular functioni

  • metal ion binding Source: UniProtKB-KW
  • rRNA binding Source: UniProtKB-KW
  • structural constituent of ribosome Source: SGD

GO - Biological processi

  • cytoplasmic translation Source: SGD
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

Metal-binding, RNA-binding, rRNA-binding, Zinc

Enzyme and pathway databases

BioCyciYEAST:G3O-32308-MONOMER.
ReactomeiREACT_290856. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
REACT_302067. L13a-mediated translational silencing of Ceruloplasmin expression.
REACT_307259. Formation of a pool of free 40S subunits.
REACT_314339. SRP-dependent cotranslational protein targeting to membrane.
REACT_332565. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_343353. Peptide chain elongation.
REACT_346847. GTP hydrolysis and joining of the 60S ribosomal subunit.

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L37-A
Alternative name(s):
L43
YL35
YP55
Gene namesi
Name:RPL37A
Synonyms:RPL35A
Ordered Locus Names:YLR185W
ORF Names:L9470.6
OrganismiSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Taxonomic identifieri559292 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaSaccharomycotinaSaccharomycetesSaccharomycetalesSaccharomycetaceaeSaccharomyces
ProteomesiUP000002311 Componenti: Chromosome XII

Organism-specific databases

EuPathDBiFungiDB:YLR185W.
SGDiS000004175. RPL37A.

Subcellular locationi

GO - Cellular componenti

  • cytosolic large ribosomal subunit Source: SGD
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11Removed1 Publication
Chaini2 – 888760S ribosomal protein L37-APRO_0000139722Add
BLAST

Proteomic databases

MaxQBiP49166.
PeptideAtlasiP49166.

Interactioni

Subunit structurei

Component of the large ribosomal subunit. Mature ribosomes consist of a small (40S) and a large (60S) subunit. The 40S subunit contains 32 different proteins (encoded by 56 genes) and 1 molecule of RNA (18S). The 60S subunit contains 46 different proteins (encoded by 81 genes) and 3 molecules of RNA (25S, 5.8S and 5S).1 Publication

Protein-protein interaction databases

BioGridi31455. 68 interactions.
DIPiDIP-2135N.
IntActiP49166. 1 interaction.
MINTiMINT-8285347.

Structurei

Secondary structure

1
88
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi5 – 84Combined sources
Beta strandi15 – 173Combined sources
Turni20 – 223Combined sources
Beta strandi24 – 285Combined sources
Turni29 – 324Combined sources
Turni35 – 373Combined sources
Beta strandi41 – 433Combined sources
Helixi48 – 503Combined sources
Helixi51 – 577Combined sources
Helixi67 – 693Combined sources
Helixi70 – 756Combined sources
Turni76 – 783Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1K5Ymodel-Z2-53[»]
3J6Xelectron microscopy6.10771-88[»]
3J6Yelectron microscopy6.10771-88[»]
3J77electron microscopy6.20871-88[»]
3J78electron microscopy6.30871-88[»]
4U3MX-ray3.00O7/o72-88[»]
4U3NX-ray3.20O7/o72-88[»]
4U3UX-ray2.90O7/o72-88[»]
4U4NX-ray3.10O7/o72-88[»]
4U4OX-ray3.60O7/o72-88[»]
4U4QX-ray3.00O7/o72-88[»]
4U4RX-ray2.80O7/o72-88[»]
4U4UX-ray3.00O7/o72-88[»]
4U4YX-ray3.20O7/o72-88[»]
4U4ZX-ray3.10O7/o72-88[»]
4U50X-ray3.20O7/o72-88[»]
4U51X-ray3.20O7/o72-88[»]
4U52X-ray3.00O7/o72-88[»]
4U53X-ray3.30O7/o72-88[»]
4U55X-ray3.20O7/o72-88[»]
4U56X-ray3.45O7/o72-88[»]
4U6FX-ray3.10O7/o72-88[»]
4V4Belectron microscopy11.70BY2-88[»]
4V6Ielectron microscopy8.80Bl1-88[»]
4V7Felectron microscopy8.70h1-88[»]
4V7RX-ray4.00Bd/Dd1-88[»]
4V88X-ray3.00Bj/Dj1-88[»]
4V8Telectron microscopy8.10j1-88[»]
4V8Yelectron microscopy4.30Bj2-88[»]
4V8Zelectron microscopy6.60Bj2-88[»]
4V91electron microscopy3.70j1-88[»]
ProteinModelPortaliP49166.
SMRiP49166. Positions 2-88.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP49166.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L37e family.Curated

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri19 – 3719C4-typeSequence AnalysisAdd
BLAST

Keywords - Domaini

Zinc-finger

Phylogenomic databases

GeneTreeiENSGT00390000005254.
HOGENOMiHOG000111076.
InParanoidiP49166.
KOiK02922.
OMAiHIQKHEC.
OrthoDBiEOG79GTKQ.

Family and domain databases

Gene3Di2.20.25.30. 1 hit.
HAMAPiMF_00547. Ribosomal_L37e.
InterProiIPR011331. Ribosomal_L37ae/L37e.
IPR001569. Ribosomal_L37e.
IPR018267. Ribosomal_L37e_CS.
IPR011332. Ribosomal_zn-bd.
[Graphical view]
PANTHERiPTHR10768. PTHR10768. 1 hit.
PfamiPF01907. Ribosomal_L37e. 1 hit.
[Graphical view]
ProDomiPD005132. Ribosomal_L37e. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF57829. SSF57829. 1 hit.
PROSITEiPS01077. RIBOSOMAL_L37E. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P49166-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGKGTPSFGK RHNKSHTLCN RCGRRSFHVQ KKTCSSCGYP AAKTRSYNWG
60 70 80
AKAKRRHTTG TGRMRYLKHV SRRFKNGFQT GSASKASA
Length:88
Mass (Da):9,850
Last modified:January 23, 2007 - v2
Checksum:i274D249361EBE5E5
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti73 – 731R → RR AA sequence (Ref. 3) Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U17246 Genomic DNA. Translation: AAB67458.1.
BK006945 Genomic DNA. Translation: DAA09504.1.
PIRiS51430.
RefSeqiNP_013286.1. NM_001182072.1.

Genome annotation databases

EnsemblFungiiYLR185W; YLR185W; YLR185W.
GeneIDi850882.
KEGGisce:YLR185W.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U17246 Genomic DNA. Translation: AAB67458.1.
BK006945 Genomic DNA. Translation: DAA09504.1.
PIRiS51430.
RefSeqiNP_013286.1. NM_001182072.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1K5Ymodel-Z2-53[»]
3J6Xelectron microscopy6.10771-88[»]
3J6Yelectron microscopy6.10771-88[»]
3J77electron microscopy6.20871-88[»]
3J78electron microscopy6.30871-88[»]
4U3MX-ray3.00O7/o72-88[»]
4U3NX-ray3.20O7/o72-88[»]
4U3UX-ray2.90O7/o72-88[»]
4U4NX-ray3.10O7/o72-88[»]
4U4OX-ray3.60O7/o72-88[»]
4U4QX-ray3.00O7/o72-88[»]
4U4RX-ray2.80O7/o72-88[»]
4U4UX-ray3.00O7/o72-88[»]
4U4YX-ray3.20O7/o72-88[»]
4U4ZX-ray3.10O7/o72-88[»]
4U50X-ray3.20O7/o72-88[»]
4U51X-ray3.20O7/o72-88[»]
4U52X-ray3.00O7/o72-88[»]
4U53X-ray3.30O7/o72-88[»]
4U55X-ray3.20O7/o72-88[»]
4U56X-ray3.45O7/o72-88[»]
4U6FX-ray3.10O7/o72-88[»]
4V4Belectron microscopy11.70BY2-88[»]
4V6Ielectron microscopy8.80Bl1-88[»]
4V7Felectron microscopy8.70h1-88[»]
4V7RX-ray4.00Bd/Dd1-88[»]
4V88X-ray3.00Bj/Dj1-88[»]
4V8Telectron microscopy8.10j1-88[»]
4V8Yelectron microscopy4.30Bj2-88[»]
4V8Zelectron microscopy6.60Bj2-88[»]
4V91electron microscopy3.70j1-88[»]
ProteinModelPortaliP49166.
SMRiP49166. Positions 2-88.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi31455. 68 interactions.
DIPiDIP-2135N.
IntActiP49166. 1 interaction.
MINTiMINT-8285347.

Proteomic databases

MaxQBiP49166.
PeptideAtlasiP49166.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiYLR185W; YLR185W; YLR185W.
GeneIDi850882.
KEGGisce:YLR185W.

Organism-specific databases

EuPathDBiFungiDB:YLR185W.
SGDiS000004175. RPL37A.

Phylogenomic databases

GeneTreeiENSGT00390000005254.
HOGENOMiHOG000111076.
InParanoidiP49166.
KOiK02922.
OMAiHIQKHEC.
OrthoDBiEOG79GTKQ.

Enzyme and pathway databases

BioCyciYEAST:G3O-32308-MONOMER.
ReactomeiREACT_290856. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
REACT_302067. L13a-mediated translational silencing of Ceruloplasmin expression.
REACT_307259. Formation of a pool of free 40S subunits.
REACT_314339. SRP-dependent cotranslational protein targeting to membrane.
REACT_332565. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_343353. Peptide chain elongation.
REACT_346847. GTP hydrolysis and joining of the 60S ribosomal subunit.

Miscellaneous databases

EvolutionaryTraceiP49166.
NextBioi967236.
PROiP49166.

Family and domain databases

Gene3Di2.20.25.30. 1 hit.
HAMAPiMF_00547. Ribosomal_L37e.
InterProiIPR011331. Ribosomal_L37ae/L37e.
IPR001569. Ribosomal_L37e.
IPR018267. Ribosomal_L37e_CS.
IPR011332. Ribosomal_zn-bd.
[Graphical view]
PANTHERiPTHR10768. PTHR10768. 1 hit.
PfamiPF01907. Ribosomal_L37e. 1 hit.
[Graphical view]
ProDomiPD005132. Ribosomal_L37e. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF57829. SSF57829. 1 hit.
PROSITEiPS01077. RIBOSOMAL_L37E. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The nucleotide sequence of Saccharomyces cerevisiae chromosome XII."
    Johnston M., Hillier L.W., Riles L., Albermann K., Andre B., Ansorge W., Benes V., Brueckner M., Delius H., Dubois E., Duesterhoeft A., Entian K.-D., Floeth M., Goffeau A., Hebling U., Heumann K., Heuss-Neitzel D., Hilbert H.
    , Hilger F., Kleine K., Koetter P., Louis E.J., Messenguy F., Mewes H.-W., Miosga T., Moestl D., Mueller-Auer S., Nentwich U., Obermaier B., Piravandi E., Pohl T.M., Portetelle D., Purnelle B., Rechmann S., Rieger M., Rinke M., Rose M., Scharfe M., Scherens B., Scholler P., Schwager C., Schwarz S., Underwood A.P., Urrestarazu L.A., Vandenbol M., Verhasselt P., Vierendeels F., Voet M., Volckaert G., Voss H., Wambutt R., Wedler E., Wedler H., Zimmermann F.K., Zollner A., Hani J., Hoheisel J.D.
    Nature 387:87-90(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 204508 / S288c.
  2. Cited for: GENOME REANNOTATION.
    Strain: ATCC 204508 / S288c.
  3. "Studies on the primary structures of yeast ribosomal proteins."
    Itoh T., Higo K., Otaka E., Osawa S.
    (In) Osawa S., Ozeki H., Uchida H., Yura T. (eds.); Genetics and evolution of RNA polymerase, tRNA and ribosomes, pp.609-624, University of Tokyo Press, Tokyo (1980)
    Cited for: PROTEIN SEQUENCE OF 2-88.
  4. "The list of cytoplasmic ribosomal proteins of Saccharomyces cerevisiae."
    Planta R.J., Mager W.H.
    Yeast 14:471-477(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NOMENCLATURE, SUBUNIT.
  5. Cited for: SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
  6. Cited for: LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
  7. "Structure of the 80S ribosome from Saccharomyces cerevisiae -- tRNA-ribosome and subunit-subunit interactions."
    Spahn C.M.T., Beckmann R., Eswar N., Penczek P.A., Sali A., Blobel G., Frank J.
    Cell 107:373-386(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: 3D-STRUCTURE MODELING OF 2-53, ELECTRON MICROSCOPY.
  8. "Domain movements of elongation factor eEF2 and the eukaryotic 80S ribosome facilitate tRNA translocation."
    Spahn C.M.T., Gomez-Lorenzo M.G., Grassucci R.A., Joergensen R., Andersen G.R., Beckmann R., Penczek P.A., Ballesta J.P.G., Frank J.
    EMBO J. 23:1008-1019(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: 3D-STRUCTURE MODELING, ELECTRON MICROSCOPY.
  9. "Crystal structure of the eukaryotic ribosome."
    Ben-Shem A., Jenner L., Yusupova G., Yusupov M.
    Science 330:1203-1209(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (4.0 ANGSTROMS) OF 80S RIBOSOME.
  10. Cited for: X-RAY CRYSTALLOGRAPHY (3.0 ANGSTROMS) OF 80S RIBOSOME.

Entry informationi

Entry nameiRL37A_YEAST
AccessioniPrimary (citable) accession number: P49166
Secondary accession number(s): D6VYI8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: January 23, 2007
Last modified: July 22, 2015
This is version 120 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Miscellaneous

Present with 21800 molecules/cell in log phase SD medium.1 Publication
There are 2 genes for L37 in yeast.

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families
  4. Yeast
    Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD
  5. Yeast chromosome XII
    Yeast (Saccharomyces cerevisiae) chromosome XII: entries and gene names

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.