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Protein

40S ribosomal protein S5

Gene

rps-5

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-6791226. Major pathway of rRNA processing in the nucleolus.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-CEL-72702. Ribosomal scanning and start codon recognition.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S5
Gene namesi
Name:rps-5
ORF Names:T05E11.1
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome IV

Organism-specific databases

WormBaseiT05E11.1; CE06360; WBGene00004474; rps-5.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 21021040S ribosomal protein S5PRO_0000124529Add
BLAST

Proteomic databases

EPDiP49041.
PaxDbiP49041.
PRIDEiP49041.

PTM databases

iPTMnetiP49041.

Interactioni

Protein-protein interaction databases

BioGridi43111. 3 interactions.
DIPiDIP-27472N.
IntActiP49041. 1 interaction.
MINTiMINT-1078727.
STRINGi6239.T05E11.1.1.

Structurei

3D structure databases

ProteinModelPortaliP49041.
SMRiP49041. Positions 21-210.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S7P family.Curated

Phylogenomic databases

eggNOGiKOG3291. Eukaryota.
COG0049. LUCA.
GeneTreeiENSGT00390000010806.
HOGENOMiHOG000039066.
InParanoidiP49041.
KOiK02989.
OMAiKLFGRWN.
OrthoDBiEOG7PZRZS.
PhylomeDBiP49041.

Family and domain databases

Gene3Di1.10.455.10. 1 hit.
InterProiIPR000235. Ribosomal_S5/S7.
IPR005716. Ribosomal_S5/S7_euk/arc.
IPR020606. Ribosomal_S7_CS.
IPR023798. Ribosomal_S7_dom.
[Graphical view]
PANTHERiPTHR11205. PTHR11205. 1 hit.
PfamiPF00177. Ribosomal_S7. 1 hit.
[Graphical view]
PIRSFiPIRSF002122. RPS7p_RPS7a_RPS5e_RPS7o. 1 hit.
SUPFAMiSSF47973. SSF47973. 1 hit.
TIGRFAMsiTIGR01028. uS7_euk_arch. 1 hit.
PROSITEiPS00052. RIBOSOMAL_S7. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P49041-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MADNWGSENV VADAAPATEA PEVALFGKWS LQSVNVSDIS LVDYIPVKEK
60 70 80 90 100
SAKYLPHSAG RFQVRRFRKA ACPIVERLAN SLMMHGRNNG KKLMTVRIVK
110 120 130 140 150
HAFEIIYLLT GENPVQVLVN AVINSGPRED STRIGRAGTV RRQAVDVAPL
160 170 180 190 200
RRVNQAIWLL CTGAREAAFR NVKTIAECLA DELINAAKGS SNSYAIKKKD
210
ELERVAKSNR
Length:210
Mass (Da):23,155
Last modified:February 1, 1996 - v1
Checksum:i3A2C4059D3E8B57F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z68751 Genomic DNA. Translation: CAA92971.1.
PIRiT24519.
RefSeqiNP_502077.1. NM_069676.3.
UniGeneiCel.38758.

Genome annotation databases

EnsemblMetazoaiT05E11.1; T05E11.1; WBGene00004474.
GeneIDi178012.
KEGGicel:CELE_T05E11.1.
UCSCiT05E11.1.1. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z68751 Genomic DNA. Translation: CAA92971.1.
PIRiT24519.
RefSeqiNP_502077.1. NM_069676.3.
UniGeneiCel.38758.

3D structure databases

ProteinModelPortaliP49041.
SMRiP49041. Positions 21-210.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi43111. 3 interactions.
DIPiDIP-27472N.
IntActiP49041. 1 interaction.
MINTiMINT-1078727.
STRINGi6239.T05E11.1.1.

PTM databases

iPTMnetiP49041.

Proteomic databases

EPDiP49041.
PaxDbiP49041.
PRIDEiP49041.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiT05E11.1; T05E11.1; WBGene00004474.
GeneIDi178012.
KEGGicel:CELE_T05E11.1.
UCSCiT05E11.1.1. c. elegans.

Organism-specific databases

CTDi178012.
WormBaseiT05E11.1; CE06360; WBGene00004474; rps-5.

Phylogenomic databases

eggNOGiKOG3291. Eukaryota.
COG0049. LUCA.
GeneTreeiENSGT00390000010806.
HOGENOMiHOG000039066.
InParanoidiP49041.
KOiK02989.
OMAiKLFGRWN.
OrthoDBiEOG7PZRZS.
PhylomeDBiP49041.

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-6791226. Major pathway of rRNA processing in the nucleolus.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-CEL-72702. Ribosomal scanning and start codon recognition.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

PROiP49041.

Family and domain databases

Gene3Di1.10.455.10. 1 hit.
InterProiIPR000235. Ribosomal_S5/S7.
IPR005716. Ribosomal_S5/S7_euk/arc.
IPR020606. Ribosomal_S7_CS.
IPR023798. Ribosomal_S7_dom.
[Graphical view]
PANTHERiPTHR11205. PTHR11205. 1 hit.
PfamiPF00177. Ribosomal_S7. 1 hit.
[Graphical view]
PIRSFiPIRSF002122. RPS7p_RPS7a_RPS5e_RPS7o. 1 hit.
SUPFAMiSSF47973. SSF47973. 1 hit.
TIGRFAMsiTIGR01028. uS7_euk_arch. 1 hit.
PROSITEiPS00052. RIBOSOMAL_S7. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    The C. elegans sequencing consortium
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2.

Entry informationi

Entry nameiRS5_CAEEL
AccessioniPrimary (citable) accession number: P49041
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: February 1, 1996
Last modified: July 6, 2016
This is version 104 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.