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P48957

- RL20_SYNY3

UniProt

P48957 - RL20_SYNY3

Protein

50S ribosomal protein L20

Gene

rplT

Organism
Synechocystis sp. (strain PCC 6803 / Kazusa)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
  1. Functioni

    Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit By similarity.By similarity

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-KW
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L20
    Gene namesi
    Name:rplT
    Synonyms:rpl20
    Ordered Locus Names:sll0767
    OrganismiSynechocystis sp. (strain PCC 6803 / Kazusa)
    Taxonomic identifieri1111708 [NCBI]
    Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesSynechocystis
    ProteomesiUP000001425: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 11711750S ribosomal protein L20PRO_0000177247Add
    BLAST

    Proteomic databases

    PaxDbiP48957.

    Interactioni

    Protein-protein interaction databases

    IntActiP48957. 2 interactions.
    STRINGi1148.sll0767.

    Structurei

    3D structure databases

    ProteinModelPortaliP48957.
    SMRiP48957. Positions 3-116.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L20P family.Curated

    Phylogenomic databases

    eggNOGiCOG0292.
    HOGENOMiHOG000035046.
    KOiK02887.
    OMAiINAATHE.
    OrthoDBiEOG6CGCMB.
    PhylomeDBiP48957.

    Family and domain databases

    HAMAPiMF_00382. Ribosomal_L20.
    InterProiIPR005813. Ribosomal_L20.
    [Graphical view]
    PANTHERiPTHR10986. PTHR10986. 1 hit.
    PfamiPF00453. Ribosomal_L20. 1 hit.
    [Graphical view]
    PRINTSiPR00062. RIBOSOMALL20.
    TIGRFAMsiTIGR01032. rplT_bact. 1 hit.
    PROSITEiPS00937. RIBOSOMAL_L20. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P48957-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTRVKRGNVA RKRRKKILKL AKGFRGSHSK LFRTANQQVM KALRNAYRDR    50
    RKRKRDFRRL WITRINAAAR QEGMSYSKLT GQLKKANIEI NRKMLAQLAV 100
    LDPAAFSEVV KVAATAK 117
    Length:117
    Mass (Da):13,553
    Last modified:February 1, 1996 - v1
    Checksum:i76664A15C1605292
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BA000022 Genomic DNA. Translation: BAA10121.1.
    PIRiS76269.
    RefSeqiNP_442051.1. NC_000911.1.
    YP_005652110.1. NC_017277.1.
    YP_007451930.1. NC_020286.1.

    Genome annotation databases

    EnsemblBacteriaiBAA10121; BAA10121; BAA10121.
    GeneIDi952731.
    KEGGisyn:sll0767.
    syy:SYNGTS_2157.
    syz:MYO_121770.
    PATRICi23841688. VBISynSp132158_2392.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BA000022 Genomic DNA. Translation: BAA10121.1 .
    PIRi S76269.
    RefSeqi NP_442051.1. NC_000911.1.
    YP_005652110.1. NC_017277.1.
    YP_007451930.1. NC_020286.1.

    3D structure databases

    ProteinModelPortali P48957.
    SMRi P48957. Positions 3-116.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    IntActi P48957. 2 interactions.
    STRINGi 1148.sll0767.

    Proteomic databases

    PaxDbi P48957.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAA10121 ; BAA10121 ; BAA10121 .
    GeneIDi 952731.
    KEGGi syn:sll0767.
    syy:SYNGTS_2157.
    syz:MYO_121770.
    PATRICi 23841688. VBISynSp132158_2392.

    Phylogenomic databases

    eggNOGi COG0292.
    HOGENOMi HOG000035046.
    KOi K02887.
    OMAi INAATHE.
    OrthoDBi EOG6CGCMB.
    PhylomeDBi P48957.

    Family and domain databases

    HAMAPi MF_00382. Ribosomal_L20.
    InterProi IPR005813. Ribosomal_L20.
    [Graphical view ]
    PANTHERi PTHR10986. PTHR10986. 1 hit.
    Pfami PF00453. Ribosomal_L20. 1 hit.
    [Graphical view ]
    PRINTSi PR00062. RIBOSOMALL20.
    TIGRFAMsi TIGR01032. rplT_bact. 1 hit.
    PROSITEi PS00937. RIBOSOMAL_L20. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. I. Sequence features in the 1 Mb region from map positions 64% to 92% of the genome."
      Kaneko T., Tanaka A., Sato S., Kotani H., Sazuka T., Miyajima N., Sugiura M., Tabata S.
      DNA Res. 2:153-166(1995) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 27184 / PCC 6803 / N-1.
    2. "Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions."
      Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S.
      , Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.
      DNA Res. 3:109-136(1996) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: PCC 6803 / Kazusa.

    Entry informationi

    Entry nameiRL20_SYNY3
    AccessioniPrimary (citable) accession number: P48957
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 1, 1996
    Last sequence update: February 1, 1996
    Last modified: October 1, 2014
    This is version 89 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Ribosomal proteins
      Ribosomal proteins families and list of entries
    2. SIMILARITY comments
      Index of protein domains and families
    3. Synechocystis PCC 6803
      Synechocystis (strain PCC 6803): entries and gene names

    External Data

    Dasty 3