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Protein

30S ribosomal protein S10

Gene

rpsJ

Organism
Rickettsia prowazekii (strain Madrid E)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Involved in the binding of tRNA to the ribosomes.UniRule annotation

GO - Molecular functioni

  1. structural constituent of ribosome Source: InterPro
  2. tRNA binding Source: UniProtKB-HAMAP

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S10UniRule annotation
Gene namesi
Name:rpsJUniRule annotation
Ordered Locus Names:RP660
OrganismiRickettsia prowazekii (strain Madrid E)
Taxonomic identifieri272947 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiatyphus group
ProteomesiUP000002480: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 10510530S ribosomal protein S10PRO_0000146587Add
BLAST

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

STRINGi272947.RP660.

Structurei

3D structure databases

ProteinModelPortaliP48850.
SMRiP48850. Positions 4-101.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S10P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0051.
HOGENOMiHOG000270246.
KOiK02946.
OMAiQQKIRIK.
OrthoDBiEOG6VXFHB.

Family and domain databases

Gene3Di3.30.70.600. 1 hit.
HAMAPiMF_00508. Ribosomal_S10.
InterProiIPR001848. Ribosomal_S10.
IPR027486. Ribosomal_S10_dom.
[Graphical view]
PANTHERiPTHR11700. PTHR11700. 1 hit.
PfamiPF00338. Ribosomal_S10. 1 hit.
[Graphical view]
PRINTSiPR00971. RIBOSOMALS10.
SUPFAMiSSF54999. SSF54999. 1 hit.
TIGRFAMsiTIGR01049. rpsJ_bact. 1 hit.

Sequencei

Sequence statusi: Complete.

P48850-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKNKIKIRLK SFDHRSLDQA TKEIVSAVKR TFATINGPIP LPRKIERFTV
60 70 80 90 100
NRSPHVHKKS REQFEIRKHK RLLVIDDPNP AVVDALSKVD LAAGVDVVIE

LESGE
Length:105
Mass (Da):11,932
Last modified:February 1, 1996 - v1
Checksum:i54EEFD3DD8FFF400
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z54170 Genomic DNA. Translation: CAA90882.1.
AJ235272 Genomic DNA. Translation: CAA15100.1.
PIRiB71672.
RefSeqiNP_221024.1. NC_000963.1.

Genome annotation databases

EnsemblBacteriaiCAA15100; CAA15100; CAA15100.
GeneIDi883938.
KEGGirpr:RP660.
PATRICi17902147. VBIRicPro72556_0682.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z54170 Genomic DNA. Translation: CAA90882.1.
AJ235272 Genomic DNA. Translation: CAA15100.1.
PIRiB71672.
RefSeqiNP_221024.1. NC_000963.1.

3D structure databases

ProteinModelPortaliP48850.
SMRiP48850. Positions 4-101.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272947.RP660.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAA15100; CAA15100; CAA15100.
GeneIDi883938.
KEGGirpr:RP660.
PATRICi17902147. VBIRicPro72556_0682.

Phylogenomic databases

eggNOGiCOG0051.
HOGENOMiHOG000270246.
KOiK02946.
OMAiQQKIRIK.
OrthoDBiEOG6VXFHB.

Family and domain databases

Gene3Di3.30.70.600. 1 hit.
HAMAPiMF_00508. Ribosomal_S10.
InterProiIPR001848. Ribosomal_S10.
IPR027486. Ribosomal_S10_dom.
[Graphical view]
PANTHERiPTHR11700. PTHR11700. 1 hit.
PfamiPF00338. Ribosomal_S10. 1 hit.
[Graphical view]
PRINTSiPR00971. RIBOSOMALS10.
SUPFAMiSSF54999. SSF54999. 1 hit.
TIGRFAMsiTIGR01049. rpsJ_bact. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "A chimeric disposition of the elongation factor genes in Rickettsia prowazekii."
    Syvaenen A.-C., Amiri H., Jamal A., Andersson S.G.E., Kurland C.G.
    J. Bacteriol. 178:6192-6199(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: Madrid E.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Madrid E.

Entry informationi

Entry nameiRS10_RICPR
AccessioniPrimary (citable) accession number: P48850
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: February 1, 1996
Last modified: January 7, 2015
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. Rickettsia prowazekii
    Rickettsia prowazekii (strain Madrid E): entries and gene names
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.