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P48840

- AGAB_VIBS7

UniProt

P48840 - AGAB_VIBS7

Protein

Beta-agarase B

Gene

agaB

Organism
Vibrio sp. (strain JT0107)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 54 (01 Oct 2014)
      Sequence version 1 (01 Feb 1996)
      Previous versions | rss
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    Functioni

    Hydrolyzes agarose to yield predominantly neoagarotetraose and neoagarohexaose.

    Catalytic activityi

    Hydrolysis of (1->4)-beta-D-galactosidic linkages in agarose, giving the tetramer as the predominant product.

    GO - Molecular functioni

    1. beta-agarase activity Source: UniProtKB-EC
    2. beta-galactosidase activity Source: InterPro

    GO - Biological processi

    1. carbohydrate metabolic process Source: InterPro

    Keywords - Molecular functioni

    Glycosidase, Hydrolase

    Protein family/group databases

    CAZyiGH50. Glycoside Hydrolase Family 50.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Beta-agarase B (EC:3.2.1.81)
    Gene namesi
    Name:agaB
    OrganismiVibrio sp. (strain JT0107)
    Taxonomic identifieri47913 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio

    Subcellular locationi

    GO - Cellular componenti

    1. beta-galactosidase complex Source: InterPro

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 955955Beta-agarase BPRO_0000057698Add
    BLAST

    Structurei

    3D structure databases

    ProteinModelPortaliP48840.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the glycosyl hydrolase 50 family.Curated

    Family and domain databases

    Gene3Di3.20.20.80. 1 hit.
    InterProiIPR013529. Glyco_hydro_42_N.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view]
    PfamiPF02449. Glyco_hydro_42. 1 hit.
    [Graphical view]
    SUPFAMiSSF51445. SSF51445. 1 hit.
    PROSITEiPS51257. PROKAR_LIPOPROTEIN. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P48840-1 [UniParc]FASTAAdd to Basket

    « Hide

    MVEVMKFTKN KIAALLSLTL LGVYGCGSTP SSSDAEGAVE DVGGTIPDFE    50
    SAAFFKKVKK DHRKAEVVSD QGVTSGSSAL KVNFDSVSEA NKFKYWPNVK 100
    VHPDSGFWNW NAKGSLSLDI TNPTDSPANI ILKLADNVGV MGSGDNQLNY 150
    AVNVPAGETV PVEMLFNGTK RKLDGYWGGE KINLRNIVEF QIFVQGPMDA 200
    QTVIIDNFNL VDATGDFIEA SGQEVKVSGP IPTVASITSF DEGQPTFVAF 250
    DRSAAATVTE LKTDMGGLLA VKLAATNAYP NITFKAPQPW DWSEYGDFSL 300
    AFDLESKADE PLQLFVRVDD AENENWGGTA NGVVDSMSSY VTLAPGDDGT 350
    FYLPLGQTGS QIVSGMRAEP PKKSYNAQAI SYGWGEKSLD TSNIVSFQLY 400
    LQNPTKDAEF NIKSVRLIPN IDADATRYEG LIDQYGQFTG SEWPKKITED 450
    EELETMGKLA KMSLKSTSQM PGRSIYGGWA DGPKLKGTGF FRTEKVDGKW 500
    SLVDPQGNLF FATGVDNIRM DDTVTITGHD FADKDKRSGK EVASEVRRSM 550
    FTWLPEDDDV LAENYDYANW VHSGALKKGE VFSFYGANLQ RKYGGTFSEA 600
    EKVWKDITID RMVDWGFTTL GNWADPMFYD NKKVAYVANG WIFGDHARIS 650
    TGNDYWGPIH DPFDPEFVNS VKAMTKKLMT EVDKNDPWMM GVFVDNEISW 700
    GNTKNDANHY GLVVNALSYD MKKSPAKAAF TEHLKEKYWA IEDLNTSWGV 750
    KVASWAEFEK SFDHRSRLSK NMKKDYAEML EMLSAKYFST VRAELKKVLP 800
    NHLYLGAPFA DWGVTPEIAK GAAPYVDVMS YNLYAEDLNS KGDWSKLAEL 850
    DKPSIIGEFH FGSTDSGLFH GGIVSAASQQ DRAKKYTNYM NSIADNPYFV 900
    GAHWFQYIDS PTTGRAWDGE NYNVGFVSIT DTPYVPLVEA AKKFNQDVYM 950
    LRYKK 955
    Length:955
    Mass (Da):105,977
    Last modified:February 1, 1996 - v1
    Checksum:i6E54555DDA8BD215
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    D21202 Genomic DNA. Translation: BAA04744.1.
    PIRiS46651.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    D21202 Genomic DNA. Translation: BAA04744.1 .
    PIRi S46651.

    3D structure databases

    ProteinModelPortali P48840.
    ModBasei Search...
    MobiDBi Search...

    Protein family/group databases

    CAZyi GH50. Glycoside Hydrolase Family 50.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Family and domain databases

    Gene3Di 3.20.20.80. 1 hit.
    InterProi IPR013529. Glyco_hydro_42_N.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view ]
    Pfami PF02449. Glyco_hydro_42. 1 hit.
    [Graphical view ]
    SUPFAMi SSF51445. SSF51445. 1 hit.
    PROSITEi PS51257. PROKAR_LIPOPROTEIN. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Sequence analysis of the agaB gene encoding a new beta-agarase from Vibrio sp. strain JT0107."
      Sugano Y., Matsumoto T., Noma M.
      Biochim. Biophys. Acta 1218:105-108(1994) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].

    Entry informationi

    Entry nameiAGAB_VIBS7
    AccessioniPrimary (citable) accession number: P48840
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 1, 1996
    Last sequence update: February 1, 1996
    Last modified: October 1, 2014
    This is version 54 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Documents

    1. Glycosyl hydrolases
      Classification of glycosyl hydrolase families and list of entries
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3