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P48839

- AGAA_VIBS7

UniProt

P48839 - AGAA_VIBS7

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Protein

Beta-agarase A

Gene
agaA
Organism
Vibrio sp. (strain JT0107)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Hydrolyzes agarose and also neoagarotetraose to yield neoagarobiose.

Catalytic activityi

Hydrolysis of (1->4)-beta-D-galactosidic linkages in agarose, giving the tetramer as the predominant product.

GO - Molecular functioni

  1. beta-agarase activity Source: UniProtKB-EC

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Glycosidase, Hydrolase

Enzyme and pathway databases

BioCyciMetaCyc:MONOMER-16649.

Protein family/group databases

CAZyiGH50. Glycoside Hydrolase Family 50.

Names & Taxonomyi

Protein namesi
Recommended name:
Beta-agarase A (EC:3.2.1.81)
Alternative name(s):
Agarase 0107
Gene namesi
Name:agaA
OrganismiVibrio sp. (strain JT0107)
Taxonomic identifieri47913 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2020 Reviewed predictionAdd
BLAST
Chaini21 – 995975Beta-agarase APRO_0000012215Add
BLAST

Family & Domainsi

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi781 – 7844Poly-Ala
Compositional biasi971 – 9744Poly-Gly

Sequence similaritiesi

Keywords - Domaini

Signal

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 2 hits.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P48839-1 [UniParc]FASTAAdd to Basket

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MKIKFLSAAI AASLALPLSA ATLVTSFEEA DYSSSENNAE FLEVSGDATS    50
EVSTEQATDG NQSIKASFDA AFKPMVVWNW ASWNWGAEDV MSVDVVNPND 100
TDVTFAIKLI DSDILPDWVD ESQTSLDYFT VSANTTQTFS FNLNGGNEFQ 150
THGENFSKDK VIGVQFMLSE NDPQVLYFDN IMVDGETVTP PPSDGAVNTQ 200
TAPVATLAQI EDFETIPDYL RPDGGVNVST TTEIVTKGAA AMAAEFTAGW 250
NGLVFAGTWN WAELGEHTAV AVDVSNNSDS NIWLYSRIED VNSQGETATR 300
GVLVKAGESK TIYTSLNDNP SLLTQDERVS ALGLRDIPAD PMSAQNGWGD 350
FVALDKSQIT AIRYFIGELA SGETSQTLVF DNMRVIKDLN HESAYAEMTD 400
AMGQNNLVTY AGKVASKEEL AKLSDPEMAA LGELTNRNMY GGNPDSSPAT 450
DCVLATPASF NACKDADGNW QLVDPAGNAF FSTGVDNIRL QDTYTMTGVS 500
SDAESESALR QSMFTEIPSD YVNENYGPVH SGPVSQGQAV SFYANNLITR 550
HASEDVWRDI TVKRMKDWGF NTLGNWTDPA LYANGDVPYV ANGWSTSGAD 600
RLPVKQIGSG YWGPLPDPWD ANFATNAATM AAEIKAQVEG NEEYLVGIFV 650
DNEMSWGNVT DVEGSRYAQT LAVFNTDGTD ATTSPAKNSF IWFLENQRYT 700
GGIADLNAAW GTDYASWDAT SPAQELAYVA GMEADMQFLA WQFAFQYFNT 750
VNTALKAELP NHLYLGSRFA DWGRTPDVVS AAAAVVDVMS YNIYKDSIAA 800
ADWDADALSQ IEAIDKPVII GEFHFGALDS GSFAEGVVNA TSQQDRADKM 850
VSFYESVNAH KNFVGAHWFQ YIDSPLTGRA WDGENYNVGF VSNTDTPYTL 900
MTDAAREFNC GMYGTDCSSL SNATEAASRA GELYTGTNIG VSHSGPEAPD 950
PGEPVDPPID PPTPPTGGVT GGGGSAGWLS LLGLAGVFLL RRRKV 995
Length:995
Mass (Da):107,276
Last modified:February 1, 1996 - v1
Checksum:i437142F6C254124B
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
D14721 Genomic DNA. Translation: BAA03541.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
D14721 Genomic DNA. Translation: BAA03541.1 .

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein family/group databases

CAZyi GH50. Glycoside Hydrolase Family 50.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Enzyme and pathway databases

BioCyci MetaCyc:MONOMER-16649.

Family and domain databases

Gene3Di 3.20.20.80. 1 hit.
InterProi IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view ]
SUPFAMi SSF51445. SSF51445. 2 hits.
ProtoNeti Search...

Publicationsi

  1. "Cloning and sequencing of agaA, a unique agarase 0107 gene from a marine bacterium, Vibrio sp. strain JT0107."
    Sugano Y., Matsumoto T., Kodama H., Noma M.
    Appl. Environ. Microbiol. 59:3750-3756(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].

Entry informationi

Entry nameiAGAA_VIBS7
AccessioniPrimary (citable) accession number: P48839
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: February 1, 1996
Last modified: October 16, 2013
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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