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Protein

Granulocyte-macrophage colony-stimulating factor

Gene

Csf2

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at transcript leveli

Functioni

Cytokine that stimulates the growth and differentiation of hematopoietic precursor cells from various lineages, including granulocytes, macrophages, eosinophils and erythrocytes.By similarity

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionCytokine, Growth factor

Enzyme and pathway databases

ReactomeiR-RNO-114604. GPVI-mediated activation cascade.
R-RNO-392451. G beta:gamma signalling through PI3Kgamma.
R-RNO-512988. Interleukin-3, 5 and GM-CSF signaling.
R-RNO-5673001. RAF/MAP kinase cascade.
R-RNO-912526. Interleukin receptor SHC signaling.

Names & Taxonomyi

Protein namesi
Recommended name:
Granulocyte-macrophage colony-stimulating factor
Short name:
GM-CSF
Alternative name(s):
Colony-stimulating factor
Short name:
CSF
Gene namesi
Name:Csf2
Synonyms:Csfgm
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 10

Organism-specific databases

RGDi621065. Csf2.

Subcellular locationi

GO - Cellular componenti

  • extracellular space Source: RGD
  • intracellular membrane-bounded organelle Source: Ensembl

Keywords - Cellular componenti

Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 17By similarityAdd BLAST17
ChainiPRO_000014483318 – 144Granulocyte-macrophage colony-stimulating factorAdd BLAST127

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Glycosylationi22O-linked (GalNAc...) serineBy similarity1
Glycosylationi27O-linked (GalNAc...) threonineBy similarity1
Disulfide bondi71 ↔ 113By similarity
Glycosylationi86N-linked (GlcNAc...) asparagineSequence analysis1
Disulfide bondi105 ↔ 138By similarity

Keywords - PTMi

Disulfide bond, Glycoprotein

Proteomic databases

PaxDbiP48750.

PTM databases

PhosphoSitePlusiP48750.

Expressioni

Gene expression databases

BgeeiENSRNOG00000026805.
GenevisibleiP48750. RN.

Interactioni

Subunit structurei

Monomer. The signaling GM-CSF receptor complex is a dodecamer of two head-to-head hexamers of two alpha, two beta, and two ligand subunits (By similarity).By similarity

GO - Molecular functioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000034235.

Structurei

3D structure databases

SMRiP48750.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the GM-CSF family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG410JBQ7. Eukaryota.
ENOG411164J. LUCA.
GeneTreeiENSGT00390000013425.
HOGENOMiHOG000037940.
HOVERGENiHBG000532.
InParanoidiP48750.
KOiK05427.
OMAiMWLQNLL.
OrthoDBiEOG091G0XFL.
PhylomeDBiP48750.
TreeFamiTF338611.

Family and domain databases

CDDicd00040. CSF2. 1 hit.
InterProiView protein in InterPro
IPR009079. 4_helix_cytokine-like_core.
IPR000773. GM_colony-stim-fac.
PANTHERiPTHR10059. PTHR10059. 1 hit.
PfamiView protein in Pfam
PF01109. GM_CSF. 1 hit.
PRINTSiPR00693. GMCSFACTOR.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD007349. GM_colony-stim-fac. 1 hit.
SMARTiView protein in SMART
SM00040. CSF2. 1 hit.
SUPFAMiSSF47266. SSF47266. 1 hit.
PROSITEiView protein in PROSITE
PS00702. GM_CSF. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P48750-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MWLQNLLFLG IVVYSFSAPT RSPNPVTRPW KHVDAIKEAL SLLNDMRALE
60 70 80 90 100
NEKNEDVDII SNEFSIQRPT CVQTRLKLYK QGLRGNLTKL NGALTMIASH
110 120 130 140
YQTNCPPTPE TDCEIEVTTF EDFIKNLKGF LFDIPFDCWK PVQK
Length:144
Mass (Da):16,562
Last modified:November 25, 2008 - v2
Checksum:i7385E93CC40836B1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR03075230 Genomic DNA. No translation available.
U00620 mRNA. Translation: AAA18281.1.
PIRiI46269.
RefSeqiNP_446304.1. NM_053852.1.
UniGeneiRn.44285.

Genome annotation databases

EnsembliENSRNOT00000032333; ENSRNOP00000034235; ENSRNOG00000026805.
GeneIDi116630.
KEGGirno:116630.
UCSCiRGD:621065. rat.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiCSF2_RAT
AccessioniPrimary (citable) accession number: P48750
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: November 25, 2008
Last modified: June 7, 2017
This is version 110 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families