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P48489 (PP1_ORYSJ) Reviewed, UniProtKB/Swiss-Prot

Last modified June 11, 2014. Version 87. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Serine/threonine-protein phosphatase PP1

EC=3.1.3.16
Gene names
Ordered Locus Names:Os03g0268000, LOC_Os03g16110
ORF Names:OJ1364E02.17, OJA1364E02.7
OrganismOryza sativa subsp. japonica (Rice) [Reference proteome]
Taxonomic identifier39947 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza

Protein attributes

Sequence length322 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Catalytic activity

[a protein]-serine/threonine phosphate + H2O = [a protein]-serine/threonine + phosphate.

Cofactor

Binds 2 manganese ions per subunit By similarity.

Sequence similarities

Belongs to the PPP phosphatase family. PP-1 subfamily.

Sequence caution

The sequence AAP06889.1 differs from that shown. Reason: Erroneous gene model prediction.

The sequence AAP06897.1 differs from that shown. Reason: Erroneous gene model prediction.

Ontologies

Keywords
   LigandManganese
Metal-binding
   Molecular functionHydrolase
Protein phosphatase
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processprotein dephosphorylation

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

   Molecular_functionmetal ion binding

Inferred from electronic annotation. Source: UniProtKB-KW

protein serine/threonine phosphatase activity

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 322322Serine/threonine-protein phosphatase PP1
PRO_0000058809

Sites

Active site1361Proton donor By similarity
Metal binding751Manganese 1 By similarity
Metal binding771Manganese 1 By similarity
Metal binding1031Manganese 1 By similarity
Metal binding1031Manganese 2 By similarity
Metal binding1351Manganese 2 By similarity
Metal binding1841Manganese 2 By similarity
Metal binding2591Manganese 2 By similarity

Experimental info

Sequence conflict3 – 119AAPGAGGQG → PRRR Ref.1
Sequence conflict171A → P in AAA74625. Ref.1
Sequence conflict25 – 262RR → PP in AAA74625. Ref.1
Sequence conflict401Q → H in AAA74625. Ref.1
Sequence conflict511T → S in AAA74625. Ref.1
Sequence conflict1201A → G in AAA74625. Ref.1
Sequence conflict1571V → M in AAA74625. Ref.1
Sequence conflict199 – 2013SLP → RLA in AAA74625. Ref.1
Sequence conflict215 – 2162LL → YF in AAA74625. Ref.1

Sequences

Sequence LengthMass (Da)Tools
P48489 [UniParc].

Last modified June 13, 2006. Version 2.
Checksum: F4C8280134836BE7

FASTA32236,166
        10         20         30         40         50         60 
MAAAPGAGGQ GGGGMDAVLL DDIIRRLLEV RTARPGKQVQ LSESEIRQLC TVSREIFLSQ 

        70         80         90        100        110        120 
PNLLELEAPI KICGDIHGQY SDLLRLFEYG GFPPEANYLF LGDYVDRGKQ SLETICLLLA 

       130        140        150        160        170        180 
YKIKYPENFF LLRGNHECAS INRIYGFYDE CKRRFNVRLW KVFTDCFNCL PVAALIDDKI 

       190        200        210        220        230        240 
LCMHGGLSPD LTHLDEIKSL PRPTDVPDTG LLCDLLWSDP GKDVQGWGMN DRGVSYTFGA 

       250        260        270        280        290        300 
DKVSEFLEKH DLDLICRAHQ VVEDGYEFFA DRQLVTIFSA PNYCGEFDNA GAMMSVDETL 

       310        320 
MCSFQILKPA ERKGKFMASN KM 

« Hide

References

« Hide 'large scale' references
[1]"Molecular characterization of catalytic-subunit cDNA sequences encoding protein phosphatases 1 and 2A and study of their roles in the gibberellin-dependent Osamy-c expression in rice."
Chang M., Wang B., Chen X., Wu R.
Plant Mol. Biol. 39:105-115(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA].
Tissue: Seed.
[2]"Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species."
The rice chromosome 3 sequencing consortium
Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B., Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T., Fadrosh D., Bera J., Weaver B., Jin S. expand/collapse author list , Johri S., Reardon M., Webb K., Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T., Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R., Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J., Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S., Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M., Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M., Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L., O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R., Jin W., Lee H.R., Jiang J., Jackson S.
Genome Res. 15:1284-1291(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[3]"Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
The rice full-length cDNA consortium
Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Nipponbare.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
U31773 mRNA. Translation: AAA74625.1.
AC135208 Genomic DNA. Translation: AAP06889.1. Sequence problems.
AC139168 Genomic DNA. Translation: AAP06897.1. Sequence problems.
AK073140 mRNA. No translation available.
PIRT03304.
RefSeqNP_001049669.1. NM_001056204.1.
UniGeneOs.9092.

3D structure databases

ProteinModelPortalP48489.
SMRP48489. Positions 20-316.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING39947.LOC_Os03g16110.2.

Proteomic databases

PaxDbP48489.
PRIDEP48489.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsOS03T0268000-01; OS03T0268000-01; OS03G0268000.
GeneID4332369.
KEGGosa:4332369.

Organism-specific databases

GrameneP48489.

Phylogenomic databases

eggNOGCOG0639.
HOGENOMHOG000172697.
KOK06269.
OMAYLVMESR.

Family and domain databases

Gene3D3.60.21.10. 1 hit.
InterProIPR004843. Calcineurin-like_PHP_apaH.
IPR029052. Metallo-depent_PP-like.
IPR006186. Ser/Thr-sp_prot-phosphatase.
[Graphical view]
PfamPF00149. Metallophos. 1 hit.
[Graphical view]
PRINTSPR00114. STPHPHTASE.
SMARTSM00156. PP2Ac. 1 hit.
[Graphical view]
SUPFAMSSF56300. SSF56300. 1 hit.
PROSITEPS00125. SER_THR_PHOSPHATASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry namePP1_ORYSJ
AccessionPrimary (citable) accession number: P48489
Secondary accession number(s): Q84J82
Entry history
Integrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: June 13, 2006
Last modified: June 11, 2014
This is version 87 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Oryza sativa (rice)

Index of Oryza sativa entries and their corresponding gene designations