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P48166 (RL44_CAEEL) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 83. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
60S ribosomal protein L44
Alternative name(s):
L41
Gene names
Name:rpl-41
ORF Names:C09H10.2
OrganismCaenorhabditis elegans [Reference proteome]
Taxonomic identifier6239 [NCBI]
Taxonomic lineageEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis

Protein attributes

Sequence length105 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the ribosomal protein L44e family.

Ontologies

Keywords
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: InterPro

   Cellular_componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionstructural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Initiator methionine11Removed By similarity
Chain2 – 10510460S ribosomal protein L44
PRO_0000149127

Sequences

Sequence LengthMass (Da)Tools
P48166 [UniParc].

Last modified January 23, 2007. Version 2.
Checksum: 88844E529EEC0758

FASTA10512,367
        10         20         30         40         50         60 
MVNVPKARRT FCDGKCRKHT NHKVTQYKKG KESKFAQGRR RYDRKQSGFG GQTKPIFRKK 

        70         80         90        100 
AKTTKKIVLR MECTECKHKK QLPIKRCKHF ELGGQKKSRG QVIQF 

« Hide

References

[1]"Genome sequence of the nematode C. elegans: a platform for investigating biology."
The C. elegans sequencing consortium
Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Bristol N2.
[2]"The Caenorhabditis elegans transcriptome project, a complementary view of the genome."
Kohara Y., Shin-i T., Suzuki Y., Sugano S., Potdevin M., Thierry-Mieg Y., Thierry-Mieg D., Thierry-Mieg J.
Submitted (SEP-2000) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: Bristol N2.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
Z50109 Genomic DNA. Translation: CAA90434.1.
AF304121 mRNA. Translation: AAG50234.1.
PIRT19159.
RefSeqNP_496375.1. NM_063974.7.
UniGeneCel.22880.

3D structure databases

ProteinModelPortalP48166.
SMRP48166. Positions 1-105.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

BioGrid40005. 1 interaction.
STRING6239.C09H10.2.2.

Proteomic databases

PaxDbP48166.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaC09H10.2.1; C09H10.2.1; C09H10.2.
C09H10.2.2; C09H10.2.2; C09H10.2.
C09H10.2.3; C09H10.2.3; C09H10.2.
GeneID174695.
KEGGcel:CELE_C09H10.2.
UCSCC09H10.2.3. c. elegans.

Organism-specific databases

CTD174695.
WormBaseC09H10.2; CE02131; WBGene00004454; rpl-41.

Phylogenomic databases

eggNOGCOG1631.
HOGENOMHOG000224989.
InParanoidP48166.
KOK02929.
OMAKYKMQLA.
OrthoDBEOG7D59R2.
PhylomeDBP48166.

Family and domain databases

Gene3D3.10.450.80. 1 hit.
InterProIPR000552. Ribosomal_L44e.
IPR011332. Ribosomal_zn-bd.
[Graphical view]
PANTHERPTHR10369. PTHR10369. 1 hit.
PfamPF00935. Ribosomal_L44. 1 hit.
[Graphical view]
ProDomPD002841. Ribosomal_L44e. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMSSF57829. SSF57829. 1 hit.
PROSITEPS01172. RIBOSOMAL_L44E. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio885110.
PROP48166.

Entry information

Entry nameRL44_CAEEL
AccessionPrimary (citable) accession number: P48166
Entry history
Integrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: January 23, 2007
Last modified: April 16, 2014
This is version 83 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Relevant documents

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries

Caenorhabditis elegans

Caenorhabditis elegans: entries, gene names and cross-references to WormBase