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Protein

60S ribosomal protein L44

Gene

rpl-41

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiREACT_292983. SRP-dependent cotranslational protein targeting to membrane.
REACT_294484. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_302850. Eukaryotic Translation Termination.
REACT_320563. GTP hydrolysis and joining of the 60S ribosomal subunit.
REACT_328080. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
REACT_333089. Formation of a pool of free 40S subunits.
REACT_333124. L13a-mediated translational silencing of Ceruloplasmin expression.
REACT_353206. Peptide chain elongation.

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L44
Alternative name(s):
L41
Gene namesi
Name:rpl-41
ORF Names:C09H10.2
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
ProteomesiUP000001940 Componenti: Chromosome II

Organism-specific databases

WormBaseiC09H10.2; CE02131; WBGene00004454; rpl-41.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11RemovedBy similarity
Chaini2 – 10510460S ribosomal protein L44PRO_0000149127Add
BLAST

Proteomic databases

PaxDbiP48166.

Interactioni

Protein-protein interaction databases

BioGridi40005. 1 interaction.
STRINGi6239.C09H10.2.3.

Structurei

3D structure databases

ProteinModelPortaliP48166.
SMRiP48166. Positions 2-95.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L44e family.Curated

Phylogenomic databases

eggNOGiCOG1631.
GeneTreeiENSGT00390000018085.
HOGENOMiHOG000224989.
InParanoidiP48166.
KOiK02929.
OMAiQIPLKRC.
OrthoDBiEOG7D59R2.
PhylomeDBiP48166.

Family and domain databases

Gene3Di3.10.450.80. 1 hit.
InterProiIPR000552. Ribosomal_L44e.
IPR011332. Ribosomal_zn-bd.
[Graphical view]
PANTHERiPTHR10369. PTHR10369. 1 hit.
PfamiPF00935. Ribosomal_L44. 1 hit.
[Graphical view]
ProDomiPD002841. Ribosomal_L44e. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF57829. SSF57829. 1 hit.
PROSITEiPS01172. RIBOSOMAL_L44E. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P48166-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVNVPKARRT FCDGKCRKHT NHKVTQYKKG KESKFAQGRR RYDRKQSGFG
60 70 80 90 100
GQTKPIFRKK AKTTKKIVLR MECTECKHKK QLPIKRCKHF ELGGQKKSRG

QVIQF
Length:105
Mass (Da):12,367
Last modified:January 23, 2007 - v2
Checksum:i88844E529EEC0758
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z50109 Genomic DNA. Translation: CAA90434.1.
AF304121 mRNA. Translation: AAG50234.1.
PIRiT19159.
RefSeqiNP_496375.1. NM_063974.7.
UniGeneiCel.22880.

Genome annotation databases

EnsemblMetazoaiC09H10.2; C09H10.2; WBGene00004454.
GeneIDi174695.
KEGGicel:CELE_C09H10.2.
UCSCiC09H10.2.3. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z50109 Genomic DNA. Translation: CAA90434.1.
AF304121 mRNA. Translation: AAG50234.1.
PIRiT19159.
RefSeqiNP_496375.1. NM_063974.7.
UniGeneiCel.22880.

3D structure databases

ProteinModelPortaliP48166.
SMRiP48166. Positions 2-95.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi40005. 1 interaction.
STRINGi6239.C09H10.2.3.

Proteomic databases

PaxDbiP48166.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiC09H10.2; C09H10.2; WBGene00004454.
GeneIDi174695.
KEGGicel:CELE_C09H10.2.
UCSCiC09H10.2.3. c. elegans.

Organism-specific databases

CTDi174695.
WormBaseiC09H10.2; CE02131; WBGene00004454; rpl-41.

Phylogenomic databases

eggNOGiCOG1631.
GeneTreeiENSGT00390000018085.
HOGENOMiHOG000224989.
InParanoidiP48166.
KOiK02929.
OMAiQIPLKRC.
OrthoDBiEOG7D59R2.
PhylomeDBiP48166.

Enzyme and pathway databases

ReactomeiREACT_292983. SRP-dependent cotranslational protein targeting to membrane.
REACT_294484. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_302850. Eukaryotic Translation Termination.
REACT_320563. GTP hydrolysis and joining of the 60S ribosomal subunit.
REACT_328080. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
REACT_333089. Formation of a pool of free 40S subunits.
REACT_333124. L13a-mediated translational silencing of Ceruloplasmin expression.
REACT_353206. Peptide chain elongation.

Miscellaneous databases

NextBioi885110.
PROiP48166.

Family and domain databases

Gene3Di3.10.450.80. 1 hit.
InterProiIPR000552. Ribosomal_L44e.
IPR011332. Ribosomal_zn-bd.
[Graphical view]
PANTHERiPTHR10369. PTHR10369. 1 hit.
PfamiPF00935. Ribosomal_L44. 1 hit.
[Graphical view]
ProDomiPD002841. Ribosomal_L44e. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF57829. SSF57829. 1 hit.
PROSITEiPS01172. RIBOSOMAL_L44E. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    The C. elegans sequencing consortium
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2.
  2. "The Caenorhabditis elegans transcriptome project, a complementary view of the genome."
    Kohara Y., Shin-i T., Suzuki Y., Sugano S., Potdevin M., Thierry-Mieg Y., Thierry-Mieg D., Thierry-Mieg J.
    Submitted (SEP-2000) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: Bristol N2.

Entry informationi

Entry nameiRL44_CAEEL
AccessioniPrimary (citable) accession number: P48166
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: January 23, 2007
Last modified: June 24, 2015
This is version 91 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.