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Protein

Ribosomal protein rpl-41

Gene

rpl-41

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosomal protein rpl-41Curated
Alternative name(s):
60S ribosomal protein L44
L41
Gene namesi
Name:rpl-41Imported
Synonyms:rpl-36.AImported
ORF Names:C09H10.2Imported
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome II

Organism-specific databases

WormBaseiC09H10.2; CE02131; WBGene00004454; rpl-41.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedBy similarity
ChainiPRO_00001491272 – 105Ribosomal protein rpl-41CuratedAdd BLAST104

Proteomic databases

EPDiP48166.
PaxDbiP48166.
PeptideAtlasiP48166.
PRIDEiP48166.

Expressioni

Gene expression databases

BgeeiWBGene00004454.

Interactioni

Protein-protein interaction databases

BioGridi40005. 1 interactor.
STRINGi6239.C09H10.2.3.

Structurei

3D structure databases

ProteinModelPortaliP48166.
SMRiP48166.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L44e family.Curated

Phylogenomic databases

eggNOGiKOG3464. Eukaryota.
COG1631. LUCA.
GeneTreeiENSGT00390000018085.
HOGENOMiHOG000224989.
InParanoidiP48166.
KOiK02929.
OMAiVCKTKAQ.
OrthoDBiEOG091G12JU.
PhylomeDBiP48166.

Family and domain databases

Gene3Di3.10.450.80. 1 hit.
InterProiIPR000552. Ribosomal_L44e.
IPR011332. Ribosomal_zn-bd.
[Graphical view]
PANTHERiPTHR10369. PTHR10369. 1 hit.
PfamiPF00935. Ribosomal_L44. 1 hit.
[Graphical view]
ProDomiPD002841. Ribosomal_L44e. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF57829. SSF57829. 1 hit.
PROSITEiPS01172. RIBOSOMAL_L44E. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P48166-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVNVPKARRT FCDGKCRKHT NHKVTQYKKG KESKFAQGRR RYDRKQSGFG
60 70 80 90 100
GQTKPIFRKK AKTTKKIVLR MECTECKHKK QLPIKRCKHF ELGGQKKSRG

QVIQF
Length:105
Mass (Da):12,367
Last modified:January 23, 2007 - v2
Checksum:i88844E529EEC0758
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z50109 Genomic DNA. Translation: CAA90434.1.
AF304121 mRNA. Translation: AAG50234.1.
PIRiT19159.
RefSeqiNP_496375.1. NM_063974.7.
UniGeneiCel.22880.

Genome annotation databases

EnsemblMetazoaiC09H10.2; C09H10.2; WBGene00004454.
GeneIDi174695.
KEGGicel:CELE_C09H10.2.
UCSCiC09H10.2.3. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z50109 Genomic DNA. Translation: CAA90434.1.
AF304121 mRNA. Translation: AAG50234.1.
PIRiT19159.
RefSeqiNP_496375.1. NM_063974.7.
UniGeneiCel.22880.

3D structure databases

ProteinModelPortaliP48166.
SMRiP48166.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi40005. 1 interactor.
STRINGi6239.C09H10.2.3.

Proteomic databases

EPDiP48166.
PaxDbiP48166.
PeptideAtlasiP48166.
PRIDEiP48166.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiC09H10.2; C09H10.2; WBGene00004454.
GeneIDi174695.
KEGGicel:CELE_C09H10.2.
UCSCiC09H10.2.3. c. elegans.

Organism-specific databases

CTDi174695.
WormBaseiC09H10.2; CE02131; WBGene00004454; rpl-41.

Phylogenomic databases

eggNOGiKOG3464. Eukaryota.
COG1631. LUCA.
GeneTreeiENSGT00390000018085.
HOGENOMiHOG000224989.
InParanoidiP48166.
KOiK02929.
OMAiVCKTKAQ.
OrthoDBiEOG091G12JU.
PhylomeDBiP48166.

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

PROiP48166.

Gene expression databases

BgeeiWBGene00004454.

Family and domain databases

Gene3Di3.10.450.80. 1 hit.
InterProiIPR000552. Ribosomal_L44e.
IPR011332. Ribosomal_zn-bd.
[Graphical view]
PANTHERiPTHR10369. PTHR10369. 1 hit.
PfamiPF00935. Ribosomal_L44. 1 hit.
[Graphical view]
ProDomiPD002841. Ribosomal_L44e. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF57829. SSF57829. 1 hit.
PROSITEiPS01172. RIBOSOMAL_L44E. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL44_CAEEL
AccessioniPrimary (citable) accession number: P48166
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: January 23, 2007
Last modified: November 30, 2016
This is version 103 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.