P48166 (RL44_CAEEL) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
60S ribosomal protein L44

Alternative name(s):
L41

Gene names

Name:	rpl-41
ORF Names:	C09H10.2

Organism

Caenorhabditis elegans [Reference proteome]

Taxonomic identifier

6239 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Protostomia › Ecdysozoa › Nematoda › Chromadorea › Rhabditida › Rhabditoidea › Rhabditidae › Peloderinae › Caenorhabditis

Protein attributes

Sequence length	105 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the ribosomal protein L44e family.

Ontologies

Keywords
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: InterPro
Cellular_component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Initiator methionine	1	1	Removed By similarity
	Chain	2 – 105	104	60S ribosomal protein L44		PRO_0000149127

Sequences

	Sequence		Length	Mass (Da)
	P48166 [UniParc]. Last modified January 23, 2007. Version 2. Checksum: 88844E529EEC0758	FASTA	105	12,367
	10 20 30 40 50 60 MVNVPKARRT FCDGKCRKHT NHKVTQYKKG KESKFAQGRR RYDRKQSGFG GQTKPIFRKK 70 80 90 100 AKTTKKIVLR MECTECKHKK QLPIKRCKHF ELGGQKKSRG QVIQF

References

[1]	"Genome sequence of the nematode C. elegans: a platform for investigating biology." The C. elegans sequencing consortium Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Bristol N2.
[2]	"The Caenorhabditis elegans transcriptome project, a complementary view of the genome." Kohara Y., Shin-i T., Suzuki Y., Sugano S., Potdevin M., Thierry-Mieg Y., Thierry-Mieg D., Thierry-Mieg J. Submitted (SEP-2000) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: Bristol N2.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	Z50109 Genomic DNA. Translation: CAA90434.1. AF304121 mRNA. Translation: AAG50234.1.
PIR	T19159.
RefSeq	NP_496375.1. NM_063974.7.
UniGene	Cel.22880.
3D structure databases
ProteinModelPortal	P48166.
SMR	P48166. Positions 2-92.
ModBase	Search...
Protein-protein interaction databases
STRING	6239.C09H10.2.2.
Proteomic databases
PaxDb	P48166.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblMetazoa	C09H10.2.1; C09H10.2.1; C09H10.2. C09H10.2.2; C09H10.2.2; C09H10.2. C09H10.2.3; C09H10.2.3; C09H10.2.
GeneID	174695.
KEGG	cel:CELE_C09H10.2.
UCSC	C09H10.2.3. c. elegans.
Organism-specific databases
CTD	174695.
WormBase	C09H10.2; CE02131; WBGene00004454; rpl-41.
Phylogenomic databases
eggNOG	COG1631.
GeneTree	ENSGT00390000018085.
HOGENOM	HOG000224989.
InParanoid	P48166.
KO	K02929.
OMA	QKGQALQ.
Family and domain databases
Gene3D	3.10.450.80. 1 hit.
InterPro	IPR000552. Ribosomal_L44e. IPR011332. Ribosomal_zn-bd_dom. [Graphical view]
PANTHER	PTHR10369. PTHR10369. 1 hit.
Pfam	PF00935. Ribosomal_L44. 1 hit. [Graphical view]
ProDom	PD002841. Ribosomal_L44e. 1 hit. [Graphical view] [Entries sharing at least one domain]
SUPFAM	SSF57829. Ribosomal_zn-bd. 1 hit.
PROSITE	PS01172. RIBOSOMAL_L44E. 1 hit. [Graphical view]
ProtoNet	Search...
Other
NextBio	885110.

Entry information

Entry name

RL44_CAEEL

Accession

Primary (citable) accession number: P48166

Entry history

Integrated into UniProtKB/Swiss-Prot:	February 1, 1996
Last sequence update:	January 23, 2007
Last modified:	May 1, 2013
This is version 78 of the entry and version 2 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Caenorhabditis annotation project