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Protein

Ribosomal protein rpl-41

Gene

rpl-41

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosomal protein rpl-41Curated
Alternative name(s):
60S ribosomal protein L44
L41
Gene namesi
Name:rpl-41Imported
Synonyms:rpl-36.AImported
ORF Names:C09H10.2Imported
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome II

Organism-specific databases

WormBaseiC09H10.2; CE02131; WBGene00004454; rpl-41.

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedBy similarity
ChainiPRO_00001491272 – 105Ribosomal protein rpl-41CuratedAdd BLAST104

Proteomic databases

EPDiP48166.
PaxDbiP48166.
PeptideAtlasiP48166.
PRIDEiP48166.

Expressioni

Gene expression databases

BgeeiWBGene00004454.

Interactioni

Protein-protein interaction databases

BioGridi40005. 1 interactor.
STRINGi6239.C09H10.2.3.

Structurei

3D structure databases

ProteinModelPortaliP48166.
SMRiP48166.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG3464. Eukaryota.
COG1631. LUCA.
GeneTreeiENSGT00390000018085.
HOGENOMiHOG000224989.
InParanoidiP48166.
KOiK02929.
OMAiYGGFPRP.
OrthoDBiEOG091G12JU.
PhylomeDBiP48166.

Family and domain databases

InterProiView protein in InterPro
IPR000552. Ribosomal_L44e.
IPR011332. Ribosomal_zn-bd.
PANTHERiPTHR10369. PTHR10369. 1 hit.
PfamiView protein in Pfam
PF00935. Ribosomal_L44. 1 hit.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD002841. Ribosomal_L44e. 1 hit.
SUPFAMiSSF57829. SSF57829. 1 hit.
PROSITEiView protein in PROSITE
PS01172. RIBOSOMAL_L44E. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P48166-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVNVPKARRT FCDGKCRKHT NHKVTQYKKG KESKFAQGRR RYDRKQSGFG
60 70 80 90 100
GQTKPIFRKK AKTTKKIVLR MECTECKHKK QLPIKRCKHF ELGGQKKSRG

QVIQF
Length:105
Mass (Da):12,367
Last modified:January 23, 2007 - v2
Checksum:i88844E529EEC0758
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z50109 Genomic DNA. Translation: CAA90434.1.
AF304121 mRNA. Translation: AAG50234.1.
PIRiT19159.
RefSeqiNP_496375.1. NM_063974.7.
UniGeneiCel.22880.

Genome annotation databases

EnsemblMetazoaiC09H10.2; C09H10.2; WBGene00004454.
GeneIDi174695.
KEGGicel:CELE_C09H10.2.
UCSCiC09H10.2.3. c. elegans.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRL44_CAEEL
AccessioniPrimary (citable) accession number: P48166
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: January 23, 2007
Last modified: June 7, 2017
This is version 107 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families