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Protein

60S ribosomal protein L23a 1

Gene

rpl-25.1

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

This protein binds to a specific region on the 26S rRNA.By similarity

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L23a 1
Gene namesi
ORF Names:F55D10.2
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome X

Organism-specific databases

WormBaseiF55D10.2; CE02777; WBGene00004438; rpl-25.1.

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001294701 – 14760S ribosomal protein L23a 1Add BLAST147

Proteomic databases

EPDiP48162.
PaxDbiP48162.
PeptideAtlasiP48162.
PRIDEiP48162.

Expressioni

Gene expression databases

BgeeiWBGene00004438.

Interactioni

Protein-protein interaction databases

BioGridi45683. 3 interactors.
DIPiDIP-24598N.
IntActiP48162. 1 interactor.
MINTiMINT-211511.
STRINGi6239.F55D10.2.2.

Structurei

3D structure databases

ProteinModelPortaliP48162.
SMRiP48162.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG1751. Eukaryota.
COG0089. LUCA.
GeneTreeiENSGT00390000003263.
HOGENOMiHOG000231365.
InParanoidiP48162.
KOiK02893.
OMAiFPRKSAP.
OrthoDBiEOG091G0UYL.
PhylomeDBiP48162.

Family and domain databases

HAMAPiMF_01369_A. Ribosomal_L23_A. 1 hit.
InterProiView protein in InterPro
IPR012678. Ribosomal_L23/L15e_core_dom.
IPR001014. Ribosomal_L23/L25_CS.
IPR005633. Ribosomal_L23/L25_N.
IPR013025. Ribosomal_L25/23.
PfamiView protein in Pfam
PF00276. Ribosomal_L23. 1 hit.
PF03939. Ribosomal_L23eN. 1 hit.
SUPFAMiSSF54189. SSF54189. 1 hit.
PROSITEiView protein in PROSITE
PS00050. RIBOSOMAL_L23. 1 hit.

Sequencei

Sequence statusi: Complete.

P48162-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAPSAPAKTA KALDAKKKVV KGKRTTHRRQ VRTSVHFRRP VTLKTARQAR
60 70 80 90 100
FPRKSAPKTS KMDHFRIIQH PLTTESAMKK IEEHNTLVFI VSNDANKYQI
110 120 130 140
KDAVHKLYNV QALKVNTLIT PLQQKKAYVR LTADYDALDV ANKIGVI
Length:147
Mass (Da):16,697
Last modified:February 1, 1996 - v1
Checksum:i1F3FF0088C453955
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO080828 Genomic DNA. Translation: CCD67088.1.
PIRiT16456.
RefSeqiNP_508808.1. NM_076407.5.
UniGeneiCel.17917.

Genome annotation databases

EnsemblMetazoaiF55D10.2; F55D10.2; WBGene00004438.
GeneIDi180748.
KEGGicel:CELE_F55D10.2.
UCSCiF55D10.2.1. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO080828 Genomic DNA. Translation: CCD67088.1.
PIRiT16456.
RefSeqiNP_508808.1. NM_076407.5.
UniGeneiCel.17917.

3D structure databases

ProteinModelPortaliP48162.
SMRiP48162.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi45683. 3 interactors.
DIPiDIP-24598N.
IntActiP48162. 1 interactor.
MINTiMINT-211511.
STRINGi6239.F55D10.2.2.

Proteomic databases

EPDiP48162.
PaxDbiP48162.
PeptideAtlasiP48162.
PRIDEiP48162.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiF55D10.2; F55D10.2; WBGene00004438.
GeneIDi180748.
KEGGicel:CELE_F55D10.2.
UCSCiF55D10.2.1. c. elegans.

Organism-specific databases

CTDi180748.
WormBaseiF55D10.2; CE02777; WBGene00004438; rpl-25.1.

Phylogenomic databases

eggNOGiKOG1751. Eukaryota.
COG0089. LUCA.
GeneTreeiENSGT00390000003263.
HOGENOMiHOG000231365.
InParanoidiP48162.
KOiK02893.
OMAiFPRKSAP.
OrthoDBiEOG091G0UYL.
PhylomeDBiP48162.

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

PROiPR:P48162.

Gene expression databases

BgeeiWBGene00004438.

Family and domain databases

HAMAPiMF_01369_A. Ribosomal_L23_A. 1 hit.
InterProiView protein in InterPro
IPR012678. Ribosomal_L23/L15e_core_dom.
IPR001014. Ribosomal_L23/L25_CS.
IPR005633. Ribosomal_L23/L25_N.
IPR013025. Ribosomal_L25/23.
PfamiView protein in Pfam
PF00276. Ribosomal_L23. 1 hit.
PF03939. Ribosomal_L23eN. 1 hit.
SUPFAMiSSF54189. SSF54189. 1 hit.
PROSITEiView protein in PROSITE
PS00050. RIBOSOMAL_L23. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiR23A1_CAEEL
AccessioniPrimary (citable) accession number: P48162
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: February 1, 1996
Last modified: May 10, 2017
This is version 112 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.