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Protein

60S ribosomal protein L23

Gene

rpl-23

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L23
Gene namesi
Name:rpl-23
ORF Names:B0336.10
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome III

Organism-specific databases

WormBaseiB0336.10; CE00778; WBGene00004435; rpl-23.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 14014060S ribosomal protein L23PRO_0000128620Add
BLAST

Proteomic databases

EPDiP48158.
PaxDbiP48158.

Expressioni

Gene expression databases

BgeeiWBGene00004435.

Interactioni

Protein-protein interaction databases

BioGridi41023. 3 interactions.
DIPiDIP-27299N.
IntActiP48158. 3 interactions.
MINTiMINT-213738.
STRINGi6239.B0336.10.1.

Structurei

3D structure databases

ProteinModelPortaliP48158.
SMRiP48158. Positions 9-139.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L14P family.Curated

Phylogenomic databases

eggNOGiKOG0901. Eukaryota.
COG0093. LUCA.
GeneTreeiENSGT00390000004690.
HOGENOMiHOG000183703.
InParanoidiP48158.
KOiK02894.
OMAiWIAFEDN.
OrthoDBiEOG091G0QGZ.
PhylomeDBiP48158.

Family and domain databases

Gene3Di2.40.150.20. 1 hit.
HAMAPiMF_01367. Ribosomal_L14. 1 hit.
InterProiIPR000218. Ribosomal_L14P.
IPR019972. Ribosomal_L14P_CS.
[Graphical view]
PANTHERiPTHR11761. PTHR11761. 1 hit.
PfamiPF00238. Ribosomal_L14. 1 hit.
[Graphical view]
SMARTiSM01374. Ribosomal_L14. 1 hit.
[Graphical view]
SUPFAMiSSF50193. SSF50193. 1 hit.
PROSITEiPS00049. RIBOSOMAL_L14. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P48158-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKRGRGGAS GAKFRISLGL PVGAVMNCAD NTGAKNLFVI SVYGIRGRLN
60 70 80 90 100
RLPSAGVGDM FVCSVKKGKP ELRKKVLQGV VIRQRKQFRR KDGTFIYFED
110 120 130 140
NAGVIVNNKG EMKGSAITGP VAKECADLWP RIAANAGSIA
Length:140
Mass (Da):14,955
Last modified:February 1, 1996 - v1
Checksum:i2C75B1DB060698E0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO080138 Genomic DNA. Translation: CCD61530.1.
PIRiT15337.
RefSeqiNP_498231.1. NM_065830.4.
UniGeneiCel.8234.

Genome annotation databases

EnsemblMetazoaiB0336.10.1; B0336.10.1; WBGene00004435.
B0336.10.2; B0336.10.2; WBGene00004435.
B0336.10.3; B0336.10.3; WBGene00004435.
GeneIDi175796.
KEGGicel:CELE_B0336.10.
UCSCiB0336.10.2. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO080138 Genomic DNA. Translation: CCD61530.1.
PIRiT15337.
RefSeqiNP_498231.1. NM_065830.4.
UniGeneiCel.8234.

3D structure databases

ProteinModelPortaliP48158.
SMRiP48158. Positions 9-139.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi41023. 3 interactions.
DIPiDIP-27299N.
IntActiP48158. 3 interactions.
MINTiMINT-213738.
STRINGi6239.B0336.10.1.

Proteomic databases

EPDiP48158.
PaxDbiP48158.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiB0336.10.1; B0336.10.1; WBGene00004435.
B0336.10.2; B0336.10.2; WBGene00004435.
B0336.10.3; B0336.10.3; WBGene00004435.
GeneIDi175796.
KEGGicel:CELE_B0336.10.
UCSCiB0336.10.2. c. elegans.

Organism-specific databases

CTDi175796.
WormBaseiB0336.10; CE00778; WBGene00004435; rpl-23.

Phylogenomic databases

eggNOGiKOG0901. Eukaryota.
COG0093. LUCA.
GeneTreeiENSGT00390000004690.
HOGENOMiHOG000183703.
InParanoidiP48158.
KOiK02894.
OMAiWIAFEDN.
OrthoDBiEOG091G0QGZ.
PhylomeDBiP48158.

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

PROiP48158.

Gene expression databases

BgeeiWBGene00004435.

Family and domain databases

Gene3Di2.40.150.20. 1 hit.
HAMAPiMF_01367. Ribosomal_L14. 1 hit.
InterProiIPR000218. Ribosomal_L14P.
IPR019972. Ribosomal_L14P_CS.
[Graphical view]
PANTHERiPTHR11761. PTHR11761. 1 hit.
PfamiPF00238. Ribosomal_L14. 1 hit.
[Graphical view]
SMARTiSM01374. Ribosomal_L14. 1 hit.
[Graphical view]
SUPFAMiSSF50193. SSF50193. 1 hit.
PROSITEiPS00049. RIBOSOMAL_L14. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL23_CAEEL
AccessioniPrimary (citable) accession number: P48158
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: February 1, 1996
Last modified: September 7, 2016
This is version 106 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.