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Protein

60S ribosomal protein L23

Gene

rpl-23

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L23
Gene namesi
Name:rpl-23
ORF Names:B0336.10
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome III

Organism-specific databases

WormBaseiB0336.10; CE00778; WBGene00004435; rpl-23.

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001286201 – 14060S ribosomal protein L23Add BLAST140

Proteomic databases

EPDiP48158.
PaxDbiP48158.
PeptideAtlasiP48158.
PRIDEiP48158.

Expressioni

Gene expression databases

BgeeiWBGene00004435.

Interactioni

Protein-protein interaction databases

BioGridi41023. 3 interactors.
DIPiDIP-27299N.
IntActiP48158. 3 interactors.
MINTiMINT-213738.
STRINGi6239.B0336.10.1.

Structurei

3D structure databases

ProteinModelPortaliP48158.
SMRiP48158.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG0901. Eukaryota.
COG0093. LUCA.
GeneTreeiENSGT00390000004690.
HOGENOMiHOG000183703.
InParanoidiP48158.
KOiK02894.
OMAiIKGPVAR.
OrthoDBiEOG091G0QGZ.
PhylomeDBiP48158.

Family and domain databases

Gene3Di2.40.150.20. 1 hit.
HAMAPiMF_01367. Ribosomal_L14. 1 hit.
InterProiView protein in InterPro
IPR000218. Ribosomal_L14P.
IPR019972. Ribosomal_L14P_CS.
PANTHERiPTHR11761. PTHR11761. 1 hit.
PfamiView protein in Pfam
PF00238. Ribosomal_L14. 1 hit.
SMARTiView protein in SMART
SM01374. Ribosomal_L14. 1 hit.
SUPFAMiSSF50193. SSF50193. 1 hit.
PROSITEiView protein in PROSITE
PS00049. RIBOSOMAL_L14. 1 hit.

Sequencei

Sequence statusi: Complete.

P48158-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKRGRGGAS GAKFRISLGL PVGAVMNCAD NTGAKNLFVI SVYGIRGRLN
60 70 80 90 100
RLPSAGVGDM FVCSVKKGKP ELRKKVLQGV VIRQRKQFRR KDGTFIYFED
110 120 130 140
NAGVIVNNKG EMKGSAITGP VAKECADLWP RIAANAGSIA
Length:140
Mass (Da):14,955
Last modified:February 1, 1996 - v1
Checksum:i2C75B1DB060698E0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO080138 Genomic DNA. Translation: CCD61530.1.
PIRiT15337.
RefSeqiNP_498231.1. NM_065830.4.
UniGeneiCel.8234.

Genome annotation databases

EnsemblMetazoaiB0336.10.1; B0336.10.1; WBGene00004435.
B0336.10.2; B0336.10.2; WBGene00004435.
B0336.10.3; B0336.10.3; WBGene00004435.
GeneIDi175796.
KEGGicel:CELE_B0336.10.
UCSCiB0336.10.2. c. elegans.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRL23_CAEEL
AccessioniPrimary (citable) accession number: P48158
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: February 1, 1996
Last modified: June 7, 2017
This is version 113 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families