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Protein

40S ribosomal protein S8

Gene

rps-8

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-6791226. Major pathway of rRNA processing in the nucleolus.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-CEL-72702. Ribosomal scanning and start codon recognition.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S8
Gene namesi
Name:rps-8
ORF Names:F42C5.8
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome IV

Organism-specific databases

WormBaseiF42C5.8a; CE04561; WBGene00004477; rps-8.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 20820840S ribosomal protein S8PRO_0000122246Add
BLAST

Proteomic databases

EPDiP48156.
PaxDbiP48156.

PTM databases

iPTMnetiP48156.

Expressioni

Gene expression databases

BgeeiWBGene00004477.
ExpressionAtlasiP48156. baseline.

Interactioni

Protein-protein interaction databases

BioGridi42622. 6 interactions.
DIPiDIP-26614N.
MINTiMINT-1044366.
STRINGi6239.F42C5.8.2.

Structurei

3D structure databases

ProteinModelPortaliP48156.
SMRiP48156. Positions 2-206.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S8e family.Curated

Phylogenomic databases

eggNOGiKOG3283. Eukaryota.
COG2007. LUCA.
GeneTreeiENSGT00390000012433.
HOGENOMiHOG000211544.
InParanoidiP48156.
KOiK02995.
OMAiHTMKKYT.
OrthoDBiEOG091G0MF7.
PhylomeDBiP48156.

Family and domain databases

InterProiIPR001047. Ribosomal_S8e.
IPR022309. Ribosomal_S8e/biogenesis_NSA2.
IPR018283. Ribosomal_S8e_CS.
[Graphical view]
PANTHERiPTHR10394. PTHR10394. 1 hit.
PfamiPF01201. Ribosomal_S8e. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00307. eS8. 1 hit.
PROSITEiPS01193. RIBOSOMAL_S8E. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P48156-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGISRDSWHK RYKTGATQPV PHKKRKFELG RPAANTKIGA HRVRLVRTRG
60 70 80 90 100
GNEKYRALRL DSGNFSWASE QTTRKTRIVD TMYNATNNEL VRTKTLVKGA
110 120 130 140 150
IISVDAAPFR QWYEAHYALP LARKKNAKLS EEDNAILNKK RSHHTMKKYT
160 170 180 190 200
ERQKTAAVDA LLIEQFNTGR LLARISSSPG QVGQANGYIL EGKELDFYLR

KIRAKKAK
Length:208
Mass (Da):23,750
Last modified:February 1, 1996 - v1
Checksum:iE1C38C2D21B86275
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO080385 Genomic DNA. Translation: CCD63349.1.
PIRiT16343.
RefSeqiNP_501167.1. NM_068766.4.
UniGeneiCel.20547.

Genome annotation databases

EnsemblMetazoaiF42C5.8a; F42C5.8a; WBGene00004477.
GeneIDi177503.
KEGGicel:CELE_F42C5.8.
UCSCiF42C5.8.1. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO080385 Genomic DNA. Translation: CCD63349.1.
PIRiT16343.
RefSeqiNP_501167.1. NM_068766.4.
UniGeneiCel.20547.

3D structure databases

ProteinModelPortaliP48156.
SMRiP48156. Positions 2-206.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi42622. 6 interactions.
DIPiDIP-26614N.
MINTiMINT-1044366.
STRINGi6239.F42C5.8.2.

PTM databases

iPTMnetiP48156.

Proteomic databases

EPDiP48156.
PaxDbiP48156.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiF42C5.8a; F42C5.8a; WBGene00004477.
GeneIDi177503.
KEGGicel:CELE_F42C5.8.
UCSCiF42C5.8.1. c. elegans.

Organism-specific databases

CTDi177503.
WormBaseiF42C5.8a; CE04561; WBGene00004477; rps-8.

Phylogenomic databases

eggNOGiKOG3283. Eukaryota.
COG2007. LUCA.
GeneTreeiENSGT00390000012433.
HOGENOMiHOG000211544.
InParanoidiP48156.
KOiK02995.
OMAiHTMKKYT.
OrthoDBiEOG091G0MF7.
PhylomeDBiP48156.

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-6791226. Major pathway of rRNA processing in the nucleolus.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-CEL-72702. Ribosomal scanning and start codon recognition.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

PROiP48156.

Gene expression databases

BgeeiWBGene00004477.
ExpressionAtlasiP48156. baseline.

Family and domain databases

InterProiIPR001047. Ribosomal_S8e.
IPR022309. Ribosomal_S8e/biogenesis_NSA2.
IPR018283. Ribosomal_S8e_CS.
[Graphical view]
PANTHERiPTHR10394. PTHR10394. 1 hit.
PfamiPF01201. Ribosomal_S8e. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00307. eS8. 1 hit.
PROSITEiPS01193. RIBOSOMAL_S8E. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRS8_CAEEL
AccessioniPrimary (citable) accession number: P48156
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: February 1, 1996
Last modified: September 7, 2016
This is version 106 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.