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Protein

40S ribosomal protein S3a

Gene

rps-1

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-6791226. Major pathway of rRNA processing in the nucleolus and cytosol.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-CEL-72702. Ribosomal scanning and start codon recognition.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S3aUniRule annotation
Gene namesi
Name:rps-1UniRule annotation
ORF Names:F56F3.5
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome III

Organism-specific databases

WormBaseiF56F3.5; CE00664; WBGene00004470; rps-1.

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedUniRule annotation
ChainiPRO_00001535302 – 25740S ribosomal protein S3aAdd BLAST256

Proteomic databases

EPDiP48154.
PaxDbiP48154.
PeptideAtlasiP48154.
PRIDEiP48154.

PTM databases

iPTMnetiP48154.

Expressioni

Gene expression databases

BgeeiWBGene00004470.

Interactioni

Subunit structurei

Component of the small ribosomal subunit. Mature ribosomes consist of a small (40S) and a large (60S) subunit. The 40S subunit contains about 33 different proteins and 1 molecule of RNA (18S). The 60S subunit contains about 49 different proteins and 3 molecules of RNA (28S, 5.8S and 5S).UniRule annotation

Protein-protein interaction databases

BioGridi40820. 3 interactors.
DIPiDIP-25062N.
IntActiP48154. 1 interactor.
MINTiMINT-1051606.
STRINGi6239.F56F3.5.2.

Structurei

3D structure databases

ProteinModelPortaliP48154.
SMRiP48154.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the eukaryotic ribosomal protein eS1 family.UniRule annotation

Phylogenomic databases

eggNOGiKOG1628. Eukaryota.
COG1890. LUCA.
GeneTreeiENSGT00390000018433.
HOGENOMiHOG000105220.
InParanoidiP48154.
KOiK02984.
OMAiMFEIMTR.
OrthoDBiEOG091G0HTU.
PhylomeDBiP48154.

Family and domain databases

HAMAPiMF_03122. Ribosomal_S3Ae_euk. 1 hit.
InterProiView protein in InterPro
IPR027500. Ribosomal_S1/3_euk.
IPR001593. Ribosomal_S3Ae.
IPR018281. Ribosomal_S3Ae_CS.
PANTHERiPTHR11830:SF11. PTHR11830:SF11. 1 hit.
PfamiView protein in Pfam
PF01015. Ribosomal_S3Ae. 1 hit.
SMARTiView protein in SMART
SM01397. Ribosomal_S3Ae. 1 hit.
PROSITEiView protein in PROSITE
PS01191. RIBOSOMAL_S3AE. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P48154-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAVGKNNNKM GKKGGKKKAV DPFSRKEWYD IKAPNMFNTR QVGKTLINRT
60 70 80 90 100
QGTKIASEGL KGRVFEVSLG DLNNSEADFR KFKLIAEDVQ GKNVLTNFHA
110 120 130 140 150
MSMTHDKLCS IVKKWHTLIE ANTAVKTTDG YTLRVFVIAF TKKSVNQVKK
160 170 180 190 200
TSYTKTSKIR KIRSEMIGCI EKEVTGCDLK EVVSKLIPDS IGKDIEKTCS
210 220 230 240 250
KLYPLQEVYI RKVKIIKRPK VDLGRLHDLH GDSITVGADG EKVDRPDDYE

PPVQQEV
Length:257
Mass (Da):28,961
Last modified:January 23, 2007 - v2
Checksum:iFF33139D7640DCD5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z32681 Genomic DNA. Translation: CAA83605.1.
PIRiS43584.
RefSeqiNP_497910.1. NM_065509.5.
UniGeneiCel.10397.

Genome annotation databases

EnsemblMetazoaiF56F3.5; F56F3.5; WBGene00004470.
GeneIDi175584.
KEGGicel:CELE_F56F3.5.
UCSCiF56F3.5. c. elegans.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRS3A_CAEEL
AccessioniPrimary (citable) accession number: P48154
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: January 23, 2007
Last modified: July 5, 2017
This is version 113 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families