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Protein

40S ribosomal protein S3

Gene

rps-3

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-6791226. Major pathway of rRNA processing in the nucleolus and cytosol.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-CEL-72702. Ribosomal scanning and start codon recognition.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S3
Gene namesi
Name:rps-3
ORF Names:C23G10.3
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome III

Organism-specific databases

WormBaseiC23G10.3; CE01810; WBGene00004472; rps-3.

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001303271 – 24740S ribosomal protein S3Add BLAST247

Proteomic databases

EPDiP48152.
PaxDbiP48152.
PeptideAtlasiP48152.
PRIDEiP48152.

Expressioni

Gene expression databases

BgeeiWBGene00004472.

Interactioni

Protein-protein interaction databases

BioGridi41100. 8 interactors.
DIPiDIP-25651N.
IntActiP48152. 3 interactors.
MINTiMINT-1039773.
STRINGi6239.C23G10.3.2.

Structurei

3D structure databases

ProteinModelPortaliP48152.
SMRiP48152.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini23 – 94KH type-2PROSITE-ProRule annotationAdd BLAST72

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG3181. Eukaryota.
COG0092. LUCA.
GeneTreeiENSGT00390000008610.
HOGENOMiHOG000210611.
InParanoidiP48152.
KOiK02985.
OMAiDHATRHV.
OrthoDBiEOG091G0I8D.
PhylomeDBiP48152.

Family and domain databases

Gene3Di3.30.300.20. 1 hit.
InterProiView protein in InterPro
IPR015946. KH_dom-like_a/b.
IPR004044. KH_dom_type_2.
IPR009019. KH_prok-type.
IPR001351. Ribosomal_S3_C.
IPR018280. Ribosomal_S3_CS.
IPR005703. Ribosomal_S3_euk/arc.
PfamiView protein in Pfam
PF07650. KH_2. 1 hit.
PF00189. Ribosomal_S3_C. 1 hit.
SUPFAMiSSF54814. SSF54814. 1 hit.
SSF54821. SSF54821. 1 hit.
TIGRFAMsiTIGR01008. uS3_euk_arch. 1 hit.
PROSITEiView protein in PROSITE
PS50823. KH_TYPE_2. 1 hit.
PS00548. RIBOSOMAL_S3. 1 hit.

Sequencei

Sequence statusi: Complete.

P48152-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAANQNVTKK KKAVIGGIFK AELNNFLMKE LAEDGYSGVE VRSTPARAEV
60 70 80 90 100
IIMATRTQNV LGERGRRIKE LTSVVQKRFG FEEGSVELYA EKVSNRGLCA
110 120 130 140 150
VAQCESLRYK LVGGLAVRRA CYGVLRFIME SGAQGVEVIV SGKLRGQRAK
160 170 180 190 200
AMKFVDGLMI HSGHPVNDYI QQAVRHVQLR QGVIGIKVKI MLPYDPRGQN
210 220 230 240
GPRNALPDHV QIVEPQEEVL PKEPHSQHKE EKKDVQVPAA QPVAPVQ
Length:247
Mass (Da):27,314
Last modified:February 1, 1996 - v1
Checksum:iB6DB70D7DA975C2B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO080630 Genomic DNA. Translation: CCD65297.1.
PIRiT15579.
RefSeqiNP_498349.1. NM_065948.4.
UniGeneiCel.10141.

Genome annotation databases

EnsemblMetazoaiC23G10.3.1; C23G10.3.1; WBGene00004472.
C23G10.3.2; C23G10.3.2; WBGene00004472.
GeneIDi175879.
KEGGicel:CELE_C23G10.3.
UCSCiC23G10.3.1. c. elegans.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRS3_CAEEL
AccessioniPrimary (citable) accession number: P48152
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: February 1, 1996
Last modified: July 5, 2017
This is version 136 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families