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Protein

Elongation factor 1-delta 1

Gene

At1g30230

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

EF-1-beta and EF-1-delta stimulate the exchange of GDP bound to EF-1-alpha to GTP.

GO - Molecular functioni

Keywordsi

Molecular functionElongation factor
Biological processProtein biosynthesis

Names & Taxonomyi

Protein namesi
Recommended name:
Elongation factor 1-delta 1
Short name:
EF-1-delta 1
Alternative name(s):
Elongation factor 1B-beta 1
eEF-1B beta 1
Gene namesi
Ordered Locus Names:At1g30230
ORF Names:F12P21.12
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

AraportiAT1G30230

Subcellular locationi

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedCombined sources
ChainiPRO_00001550352 – 231Elongation factor 1-delta 1Add BLAST230

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei2N-acetylalanineCombined sources1

Keywords - PTMi

Acetylation

Proteomic databases

PaxDbiP48006
PRIDEiP48006

PTM databases

iPTMnetiP48006

Expressioni

Gene expression databases

ExpressionAtlasiP48006 baseline and differential
GenevisibleiP48006 AT

Interactioni

Subunit structurei

EF-1 is composed of 4 subunits: alpha, beta (1B-alpha=beta'), delta (1B-beta), and gamma (1B-gamma).By similarity

Protein-protein interaction databases

BioGridi25138, 3 interactors
STRINGi3702.AT1G30230.2

Structurei

3D structure databases

ProteinModelPortaliP48006
SMRiP48006
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini10 – 73GST C-terminalAdd BLAST64

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi106 – 111Poly-Asp6

Sequence similaritiesi

Belongs to the EF-1-beta/EF-1-delta family.Curated

Phylogenomic databases

eggNOGiKOG1668 Eukaryota
COG2092 LUCA
HOGENOMiHOG000207273
InParanoidiP48006
KOiK03232
PhylomeDBiP48006

Family and domain databases

CDDicd00292 EF1B, 1 hit
Gene3Di3.30.70.60, 1 hit
InterProiView protein in InterPro
IPR036219 eEF-1beta-like_sf
IPR014038 EF1B_bsu/dsu_GNE
IPR036282 Glutathione-S-Trfase_C_sf
IPR014717 Transl_elong_EF1B/ribosomal_S6
IPR001326 Transl_elong_EF1B_B/D_CS
PfamiView protein in Pfam
PF00736 EF1_GNE, 1 hit
SMARTiView protein in SMART
SM00888 EF1_GNE, 1 hit
SUPFAMiSSF47616 SSF47616, 1 hit
SSF54984 SSF54984, 1 hit
PROSITEiView protein in PROSITE
PS00824 EF1BD_1, 1 hit
PS00825 EF1BD_2, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

This entry describes 1 isoform i produced by alternative splicing. AlignAdd to basket

Note: A number of isoforms are produced. According to EST sequences.
Isoform 1 (identifier: P48006-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MAAFPNLNSD AGLKKLDEHL LTRSYITGYQ ASKDDITVFA ALAKPPTSQY
60 70 80 90 100
VNASRWYNHI DALLRISGVS AEGSGVIVEG SAPITEEAVA TPPAADSKDA
110 120 130 140 150
AADEEDDDDV DLFGEETEEE KKAAEERAAS VKASTKKKES GKSSVLIDIK
160 170 180 190 200
PWDDETDMKK LEEAVKSIQM EGLFWGASKL VPVGYGIKKL QILCTIVDDL
210 220 230
VSIDTMIEEQ LTVEPINEYV QSCDIVAFNK I
Length:231
Mass (Da):25,132
Last modified:February 21, 2001 - v2
Checksum:i2A928F477BF9E932
GO

Sequence cautioni

The sequence AAG50564 differs from that shown. Reason: Erroneous gene model prediction.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti102A → P in CAA52751 (PubMed:8666245).Curated1
Sequence conflicti115E → Q in CAA52751 (PubMed:8666245).Curated1
Sequence conflicti161L → R in CAA52751 (PubMed:8666245).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X74733 Genomic DNA Translation: CAA52751.1
AC073506 Genomic DNA Translation: AAG50564.1 Sequence problems.
CP002684 Genomic DNA Translation: AEE31195.1
AK226216 mRNA Translation: BAE98381.1
PIRiS37103
RefSeqiNP_174314.2, NM_102762.5 [P48006-1]
UniGeneiAt.24745

Genome annotation databases

EnsemblPlantsiAT1G30230.1; AT1G30230.1; AT1G30230 [P48006-1]
GeneIDi839903
GrameneiAT1G30230.1; AT1G30230.1; AT1G30230 [P48006-1]
KEGGiath:AT1G30230

Keywords - Coding sequence diversityi

Alternative splicing

Similar proteinsi

Entry informationi

Entry nameiEF1D1_ARATH
AccessioniPrimary (citable) accession number: P48006
Secondary accession number(s): Q0WWW7
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: February 21, 2001
Last modified: April 25, 2018
This is version 130 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health