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Protein

Elongation factor 1-delta 1

Gene

At1g30230

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

EF-1-beta and EF-1-delta stimulate the exchange of GDP bound to EF-1-alpha to GTP.

GO - Molecular functioni

Keywordsi

Molecular functionElongation factor
Biological processProtein biosynthesis

Names & Taxonomyi

Protein namesi
Recommended name:
Elongation factor 1-delta 1
Short name:
EF-1-delta 1
Alternative name(s):
Elongation factor 1B-beta 1
eEF-1B beta 1
Gene namesi
Ordered Locus Names:At1g30230
ORF Names:F12P21.12
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

AraportiAT1G30230.

Subcellular locationi

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedCombined sources
ChainiPRO_00001550352 – 231Elongation factor 1-delta 1Add BLAST230

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei2N-acetylalanineCombined sources1

Keywords - PTMi

Acetylation

Proteomic databases

PaxDbiP48006.
PRIDEiP48006.

PTM databases

iPTMnetiP48006.

Expressioni

Gene expression databases

ExpressionAtlasiP48006. baseline and differential.
GenevisibleiP48006. AT.

Interactioni

Subunit structurei

EF-1 is composed of 4 subunits: alpha, beta (1B-alpha=beta'), delta (1B-beta), and gamma (1B-gamma).By similarity

Protein-protein interaction databases

BioGridi25138. 3 interactors.
STRINGi3702.AT1G30230.2.

Structurei

3D structure databases

ProteinModelPortaliP48006.
SMRiP48006.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini10 – 73GST C-terminalAdd BLAST64

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi106 – 111Poly-Asp6

Sequence similaritiesi

Belongs to the EF-1-beta/EF-1-delta family.Curated

Phylogenomic databases

eggNOGiKOG1668. Eukaryota.
COG2092. LUCA.
HOGENOMiHOG000207273.
InParanoidiP48006.
KOiK03232.
PhylomeDBiP48006.

Family and domain databases

CDDicd00292. EF1B. 1 hit.
Gene3Di3.30.70.60. 1 hit.
InterProiView protein in InterPro
IPR036219. eEF-1beta-like_sf.
IPR014038. EF1B_bsu/dsu_GNE.
IPR036282. Glutathione-S-Trfase_C_sf.
IPR014717. Transl_elong_EF1B/ribosomal_S6.
IPR001326. Transl_elong_EF1B_B/D_CS.
PfamiView protein in Pfam
PF00736. EF1_GNE. 1 hit.
SMARTiView protein in SMART
SM00888. EF1_GNE. 1 hit.
SUPFAMiSSF47616. SSF47616. 1 hit.
SSF54984. SSF54984. 1 hit.
PROSITEiView protein in PROSITE
PS00824. EF1BD_1. 1 hit.
PS00825. EF1BD_2. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

This entry describes 1 isoform i produced by alternative splicing. AlignAdd to basket

Note: A number of isoforms are produced. According to EST sequences.
Isoform 1 (identifier: P48006-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MAAFPNLNSD AGLKKLDEHL LTRSYITGYQ ASKDDITVFA ALAKPPTSQY
60 70 80 90 100
VNASRWYNHI DALLRISGVS AEGSGVIVEG SAPITEEAVA TPPAADSKDA
110 120 130 140 150
AADEEDDDDV DLFGEETEEE KKAAEERAAS VKASTKKKES GKSSVLIDIK
160 170 180 190 200
PWDDETDMKK LEEAVKSIQM EGLFWGASKL VPVGYGIKKL QILCTIVDDL
210 220 230
VSIDTMIEEQ LTVEPINEYV QSCDIVAFNK I
Length:231
Mass (Da):25,132
Last modified:February 21, 2001 - v2
Checksum:i2A928F477BF9E932
GO

Sequence cautioni

The sequence AAG50564 differs from that shown. Reason: Erroneous gene model prediction.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti102A → P in CAA52751 (PubMed:8666245).Curated1
Sequence conflicti115E → Q in CAA52751 (PubMed:8666245).Curated1
Sequence conflicti161L → R in CAA52751 (PubMed:8666245).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X74733 Genomic DNA. Translation: CAA52751.1.
AC073506 Genomic DNA. Translation: AAG50564.1. Sequence problems.
CP002684 Genomic DNA. Translation: AEE31195.1.
AK226216 mRNA. Translation: BAE98381.1.
PIRiS37103.
RefSeqiNP_174314.2. NM_102762.5. [P48006-1]
UniGeneiAt.24745.

Genome annotation databases

EnsemblPlantsiAT1G30230.1; AT1G30230.1; AT1G30230. [P48006-1]
GeneIDi839903.
GrameneiAT1G30230.1; AT1G30230.1; AT1G30230.
KEGGiath:AT1G30230.

Keywords - Coding sequence diversityi

Alternative splicing

Similar proteinsi

Entry informationi

Entry nameiEF1D1_ARATH
AccessioniPrimary (citable) accession number: P48006
Secondary accession number(s): Q0WWW7
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: February 21, 2001
Last modified: October 25, 2017
This is version 128 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families