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Protein

Putative cell wall protein

Gene

At2g20870

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Putative cell wall protein
Gene namesi
Ordered Locus Names:At2g20870
ORF Names:F5H14.16
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548 Componenti: Chromosome 2

Organism-specific databases

TAIRiAT2G20870.

Subcellular locationi

Secretedcell wall Curated

GO - Cellular componenti

  1. cell wall Source: UniProtKB-SubCell
  2. extracellular region Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Cell wall, Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2121Sequence AnalysisAdd
BLAST
Chaini22 – 140119Putative cell wall proteinPRO_0000021053Add
BLAST

Proteomic databases

PaxDbiP47925.
PRIDEiP47925.

Expressioni

Tissue specificityi

Inflorescence.

Inductioni

By gibberellins.

Gene expression databases

ExpressionAtlasiP47925. baseline and differential.
GenevestigatoriP47925.

Family & Domainsi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiNOG240588.
HOGENOMiHOG000294230.
InParanoidiP47925.
OMAiFLVTIEP.
PhylomeDBiP47925.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P47925-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASSLITSAV IVVVLSLVLG SVEQVSGLRH VPKSPKTTDV KHPDFLVTIE
60 70 80 90 100
PKPTILIPGV GRFLLPPKCK KPFYPYNPVT GAPLTGGGIP SYNGGQGAGP
110 120 130 140
HTQLPGGDDT LVPNPGFEAP TPTIGAGTGS NGQVPPVPLP
Length:140
Mass (Da):14,260
Last modified:January 10, 2003 - v2
Checksum:i5154A98A35469E3F
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti37 – 371T → I in CAA52404 (PubMed:8155880).Curated
Sequence conflicti119 – 1191A → E in CAA52404 (PubMed:8155880).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X74360 mRNA. Translation: CAA52404.1.
AC006234 Genomic DNA. Translation: AAD20908.1.
CP002685 Genomic DNA. Translation: AEC07089.1.
PIRiD84594.
S43789.
RefSeqiNP_565490.1. NM_127656.4.
UniGeneiAt.26797.
At.7675.

Genome annotation databases

EnsemblPlantsiAT2G20870.1; AT2G20870.1; AT2G20870.
GeneIDi816620.
KEGGiath:AT2G20870.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X74360 mRNA. Translation: CAA52404.1.
AC006234 Genomic DNA. Translation: AAD20908.1.
CP002685 Genomic DNA. Translation: AEC07089.1.
PIRiD84594.
S43789.
RefSeqiNP_565490.1. NM_127656.4.
UniGeneiAt.26797.
At.7675.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PaxDbiP47925.
PRIDEiP47925.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT2G20870.1; AT2G20870.1; AT2G20870.
GeneIDi816620.
KEGGiath:AT2G20870.

Organism-specific databases

TAIRiAT2G20870.

Phylogenomic databases

eggNOGiNOG240588.
HOGENOMiHOG000294230.
InParanoidiP47925.
OMAiFLVTIEP.
PhylomeDBiP47925.

Gene expression databases

ExpressionAtlasiP47925. baseline and differential.
GenevestigatoriP47925.

Family and domain databases

ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Cloning of two gibberellin-regulated cDNAs from Arabidopsis thaliana by subtractive hybridization: expression of the tonoplast water channel, gamma-TIP, is increased by GA3."
    Phillips A.L., Huttly A.K.
    Plant Mol. Biol. 24:603-615(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: cv. Landsberg erecta.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  3. The Arabidopsis Information Resource (TAIR)
    Submitted (MAR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.

Entry informationi

Entry nameiCWPX_ARATH
AccessioniPrimary (citable) accession number: P47925
Secondary accession number(s): Q9SKT2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: January 10, 2003
Last modified: January 7, 2015
This is version 75 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.