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Protein

Putative cell wall protein

Gene

At2g20870

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Putative cell wall protein
Gene namesi
Ordered Locus Names:At2g20870
ORF Names:F5H14.16
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

TAIRiAT2G20870.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell wall, Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2121Sequence analysisAdd
BLAST
Chaini22 – 140119Putative cell wall proteinPRO_0000021053Add
BLAST

Proteomic databases

PaxDbiP47925.
PRIDEiP47925.

Expressioni

Tissue specificityi

Inflorescence.

Inductioni

By gibberellins.

Gene expression databases

ExpressionAtlasiP47925. baseline and differential.
GenevisibleiP47925. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT2G20870.1.

Family & Domainsi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG410J7BH. Eukaryota.
ENOG410ZB3I. LUCA.
HOGENOMiHOG000294230.
InParanoidiP47925.
OMAiFLVTIEP.
PhylomeDBiP47925.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P47925-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASSLITSAV IVVVLSLVLG SVEQVSGLRH VPKSPKTTDV KHPDFLVTIE
60 70 80 90 100
PKPTILIPGV GRFLLPPKCK KPFYPYNPVT GAPLTGGGIP SYNGGQGAGP
110 120 130 140
HTQLPGGDDT LVPNPGFEAP TPTIGAGTGS NGQVPPVPLP
Length:140
Mass (Da):14,260
Last modified:January 10, 2003 - v2
Checksum:i5154A98A35469E3F
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti37 – 371T → I in CAA52404 (PubMed:8155880).Curated
Sequence conflicti119 – 1191A → E in CAA52404 (PubMed:8155880).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X74360 mRNA. Translation: CAA52404.1.
AC006234 Genomic DNA. Translation: AAD20908.1.
CP002685 Genomic DNA. Translation: AEC07089.1.
PIRiD84594.
S43789.
RefSeqiNP_565490.1. NM_127656.4.
UniGeneiAt.26797.
At.7675.

Genome annotation databases

EnsemblPlantsiAT2G20870.1; AT2G20870.1; AT2G20870.
GeneIDi816620.
GrameneiAT2G20870.1; AT2G20870.1; AT2G20870.
KEGGiath:AT2G20870.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X74360 mRNA. Translation: CAA52404.1.
AC006234 Genomic DNA. Translation: AAD20908.1.
CP002685 Genomic DNA. Translation: AEC07089.1.
PIRiD84594.
S43789.
RefSeqiNP_565490.1. NM_127656.4.
UniGeneiAt.26797.
At.7675.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT2G20870.1.

Proteomic databases

PaxDbiP47925.
PRIDEiP47925.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT2G20870.1; AT2G20870.1; AT2G20870.
GeneIDi816620.
GrameneiAT2G20870.1; AT2G20870.1; AT2G20870.
KEGGiath:AT2G20870.

Organism-specific databases

TAIRiAT2G20870.

Phylogenomic databases

eggNOGiENOG410J7BH. Eukaryota.
ENOG410ZB3I. LUCA.
HOGENOMiHOG000294230.
InParanoidiP47925.
OMAiFLVTIEP.
PhylomeDBiP47925.

Miscellaneous databases

PROiP47925.

Gene expression databases

ExpressionAtlasiP47925. baseline and differential.
GenevisibleiP47925. AT.

Family and domain databases

ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Cloning of two gibberellin-regulated cDNAs from Arabidopsis thaliana by subtractive hybridization: expression of the tonoplast water channel, gamma-TIP, is increased by GA3."
    Phillips A.L., Huttly A.K.
    Plant Mol. Biol. 24:603-615(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: cv. Landsberg erecta.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  3. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.

Entry informationi

Entry nameiCWPX_ARATH
AccessioniPrimary (citable) accession number: P47925
Secondary accession number(s): Q9SKT2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: January 10, 2003
Last modified: February 17, 2016
This is version 79 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.