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Protein

Putative cell wall protein

Gene

At2g20870

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Putative cell wall protein
Gene namesi
Ordered Locus Names:At2g20870
ORF Names:F5H14.16
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 2

Organism-specific databases

AraportiAT2G20870.
TAIRilocus:2051369. AT2G20870.

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Cell wall, Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 21Sequence analysisAdd BLAST21
ChainiPRO_000002105322 – 140Putative cell wall proteinAdd BLAST119

Proteomic databases

PaxDbiP47925.

Expressioni

Tissue specificityi

Inflorescence.

Inductioni

By gibberellins.

Gene expression databases

ExpressionAtlasiP47925. baseline and differential.
GenevisibleiP47925. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT2G20870.1.

Structurei

3D structure databases

SMRiP47925.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG410J7BH. Eukaryota.
ENOG410ZB3I. LUCA.
HOGENOMiHOG000294230.
InParanoidiP47925.
OMAiHVPKSPK.
OrthoDBiEOG09360XIY.
PhylomeDBiP47925.

Family and domain databases

InterProiView protein in InterPro
IPR034565. Put_cell_wall.
PANTHERiPTHR36733. PTHR36733. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P47925-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASSLITSAV IVVVLSLVLG SVEQVSGLRH VPKSPKTTDV KHPDFLVTIE
60 70 80 90 100
PKPTILIPGV GRFLLPPKCK KPFYPYNPVT GAPLTGGGIP SYNGGQGAGP
110 120 130 140
HTQLPGGDDT LVPNPGFEAP TPTIGAGTGS NGQVPPVPLP
Length:140
Mass (Da):14,260
Last modified:January 10, 2003 - v2
Checksum:i5154A98A35469E3F
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti37T → I in CAA52404 (PubMed:8155880).Curated1
Sequence conflicti119A → E in CAA52404 (PubMed:8155880).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X74360 mRNA. Translation: CAA52404.1.
AC006234 Genomic DNA. Translation: AAD20908.1.
CP002685 Genomic DNA. Translation: AEC07089.1.
PIRiD84594.
S43789.
RefSeqiNP_565490.1. NM_127656.5.
UniGeneiAt.26797.
At.7675.

Genome annotation databases

EnsemblPlantsiAT2G20870.1; AT2G20870.1; AT2G20870.
GeneIDi816620.
GrameneiAT2G20870.1; AT2G20870.1; AT2G20870.
KEGGiath:AT2G20870.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiCWPX_ARATH
AccessioniPrimary (citable) accession number: P47925
Secondary accession number(s): Q9SKT2
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: January 10, 2003
Last modified: June 7, 2017
This is version 86 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names