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P47915

- RL29_MOUSE

UniProt

P47915 - RL29_MOUSE

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Protein
60S ribosomal protein L29
Gene
Rpl29, Rpl43
Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. structural constituent of ribosome Source: InterPro
Complete GO annotation...

GO - Biological processi

  1. translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiREACT_196445. SRP-dependent cotranslational protein targeting to membrane.
REACT_198524. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_198528. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L29
Gene namesi
Name:Rpl29
Synonyms:Rpl43
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 9

Organism-specific databases

MGIiMGI:99687. Rpl29.

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11Removed By similarity
Chaini2 – 16015960S ribosomal protein L29
PRO_0000219136Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei5 – 51N6-methyllysine By similarity
Modified residuei33 – 331N6-acetyllysine By similarity
Cross-linki56 – 56Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) By similarity
Cross-linki73 – 73Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) By similarity
Modified residuei138 – 1381Phosphoserine By similarity

Keywords - PTMi

Acetylation, Isopeptide bond, Methylation, Phosphoprotein, Ubl conjugation

Proteomic databases

PaxDbiP47915.
PRIDEiP47915.

PTM databases

PhosphoSiteiP47915.

Expressioni

Gene expression databases

BgeeiP47915.
CleanExiMM_RPL29.
GenevestigatoriP47915.

Interactioni

Protein-protein interaction databases

BioGridi202976. 1 interaction.
IntActiP47915. 5 interactions.
MINTiMINT-1581728.
STRINGi10090.ENSMUSP00000080203.

Structurei

3D structure databases

ProteinModelPortaliP47915.
SMRiP47915. Positions 2-79.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati127 – 13481
Repeati135 – 14282

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni127 – 142162 X 8 AA tandem repeats of A-X-A-K-A-P-A-[KQ]
Add
BLAST

Sequence similaritiesi

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiNOG249125.
HOGENOMiHOG000139149.
HOVERGENiHBG000386.
InParanoidiP47915.
KOiK02905.
OMAiCRPKSQA.
OrthoDBiEOG7JT70C.
PhylomeDBiP47915.
TreeFamiTF313858.

Family and domain databases

InterProiIPR002673. Ribosomal_L29e.
[Graphical view]
PANTHERiPTHR12884. PTHR12884. 1 hit.
PfamiPF01779. Ribosomal_L29e. 1 hit.
[Graphical view]
ProDomiPD010314. Ribosomal_L29e. 1 hit.
[Graphical view] [Entries sharing at least one domain]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P47915-1 [UniParc]FASTAAdd to Basket

« Hide

MAKSKNHTTH NQSRKWHRNG IKKPRSQRYE SLKGVDPKFL RNMRFAKKHN    50
KKGLKKMQAN NAKAVSARAE AIKALVKPQA IKPKMPKGPK LKRLAFIAHP 100
KLGKRIRSYM AKGQRLCQPK PKVQTKAGAK APAKAQASAP AQAPKGAQAP 150
KGAQAPVKAP 160
Length:160
Mass (Da):17,587
Last modified:January 23, 2007 - v2
Checksum:i420E1A9ED9709C01
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
L08651 mRNA. Translation: AAA16857.1.
BC002062 mRNA. Translation: AAH02062.1.
BC081467 mRNA. Translation: AAH81467.1.
BC082292 mRNA. Translation: AAH82292.1.
BC086897 mRNA. Translation: AAH86897.1.
BC086898 mRNA. Translation: AAH86898.1.
CCDSiCCDS23476.1.
PIRiJC2012.
RefSeqiNP_033108.1. NM_009082.2.
XP_006511722.1. XM_006511659.1.
XP_006511723.1. XM_006511660.1.
XP_990228.1. XM_985134.6.
UniGeneiMm.288696.
Mm.359377.
Mm.431965.

Genome annotation databases

EnsembliENSMUST00000059802; ENSMUSP00000080203; ENSMUSG00000048758.
ENSMUST00000150576; ENSMUSP00000117834; ENSMUSG00000048758.
GeneIDi19944.
666642.
KEGGimmu:19944.
mmu:666642.
UCSCiuc007avm.2. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
L08651 mRNA. Translation: AAA16857.1 .
BC002062 mRNA. Translation: AAH02062.1 .
BC081467 mRNA. Translation: AAH81467.1 .
BC082292 mRNA. Translation: AAH82292.1 .
BC086897 mRNA. Translation: AAH86897.1 .
BC086898 mRNA. Translation: AAH86898.1 .
CCDSi CCDS23476.1.
PIRi JC2012.
RefSeqi NP_033108.1. NM_009082.2.
XP_006511722.1. XM_006511659.1.
XP_006511723.1. XM_006511660.1.
XP_990228.1. XM_985134.6.
UniGenei Mm.288696.
Mm.359377.
Mm.431965.

3D structure databases

ProteinModelPortali P47915.
SMRi P47915. Positions 2-79.
ModBasei Search...

Protein-protein interaction databases

BioGridi 202976. 1 interaction.
IntActi P47915. 5 interactions.
MINTi MINT-1581728.
STRINGi 10090.ENSMUSP00000080203.

PTM databases

PhosphoSitei P47915.

Proteomic databases

PaxDbi P47915.
PRIDEi P47915.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000059802 ; ENSMUSP00000080203 ; ENSMUSG00000048758 .
ENSMUST00000150576 ; ENSMUSP00000117834 ; ENSMUSG00000048758 .
GeneIDi 19944.
666642.
KEGGi mmu:19944.
mmu:666642.
UCSCi uc007avm.2. mouse.

Organism-specific databases

CTDi 6159.
MGIi MGI:99687. Rpl29.

Phylogenomic databases

eggNOGi NOG249125.
HOGENOMi HOG000139149.
HOVERGENi HBG000386.
InParanoidi P47915.
KOi K02905.
OMAi CRPKSQA.
OrthoDBi EOG7JT70C.
PhylomeDBi P47915.
TreeFami TF313858.

Enzyme and pathway databases

Reactomei REACT_196445. SRP-dependent cotranslational protein targeting to membrane.
REACT_198524. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_198528. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

NextBioi 297465.
PROi P47915.
SOURCEi Search...

Gene expression databases

Bgeei P47915.
CleanExi MM_RPL29.
Genevestigatori P47915.

Family and domain databases

InterProi IPR002673. Ribosomal_L29e.
[Graphical view ]
PANTHERi PTHR12884. PTHR12884. 1 hit.
Pfami PF01779. Ribosomal_L29e. 1 hit.
[Graphical view ]
ProDomi PD010314. Ribosomal_L29e. 1 hit.
[Graphical view ] [Entries sharing at least one domain ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Cloning a pseudogene and cDNA encoding a 17-kDa ribosomal protein from mouse: structure and regulation of expression."
    Rudert F., Garnier J.-M., Schuhbaur B.
    Gene 133:249-254(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6, Czech II and FVB/N-3.
    Tissue: Brain, Kidney and Mammary gland.

Entry informationi

Entry nameiRL29_MOUSE
AccessioniPrimary (citable) accession number: P47915
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: January 23, 2007
Last modified: September 3, 2014
This is version 103 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi