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P47915

- RL29_MOUSE

UniProt

P47915 - RL29_MOUSE

Protein

60S ribosomal protein L29

Gene

Rpl29

Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli
  1. Functioni

    GO - Molecular functioni

    1. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: InterPro

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Enzyme and pathway databases

    ReactomeiREACT_196445. SRP-dependent cotranslational protein targeting to membrane.
    REACT_198524. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
    REACT_198528. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    60S ribosomal protein L29
    Gene namesi
    Name:Rpl29
    Synonyms:Rpl43
    OrganismiMus musculus (Mouse)
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
    ProteomesiUP000000589: Chromosome 9

    Organism-specific databases

    MGIiMGI:99687. Rpl29.

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Initiator methioninei1 – 11RemovedBy similarity
    Chaini2 – 16015960S ribosomal protein L29PRO_0000219136Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Modified residuei5 – 51N6-methyllysineBy similarity
    Modified residuei33 – 331N6-acetyllysineBy similarity
    Cross-linki56 – 56Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)By similarity
    Cross-linki73 – 73Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)By similarity
    Modified residuei138 – 1381PhosphoserineBy similarity

    Keywords - PTMi

    Acetylation, Isopeptide bond, Methylation, Phosphoprotein, Ubl conjugation

    Proteomic databases

    PaxDbiP47915.
    PRIDEiP47915.

    PTM databases

    PhosphoSiteiP47915.

    Expressioni

    Gene expression databases

    BgeeiP47915.
    CleanExiMM_RPL29.
    GenevestigatoriP47915.

    Interactioni

    Protein-protein interaction databases

    BioGridi202976. 1 interaction.
    IntActiP47915. 5 interactions.
    MINTiMINT-1581728.
    STRINGi10090.ENSMUSP00000080203.

    Structurei

    3D structure databases

    ProteinModelPortaliP47915.
    SMRiP47915. Positions 2-79.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Repeati127 – 13481
    Repeati135 – 14282

    Region

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Regioni127 – 142162 X 8 AA tandem repeats of A-X-A-K-A-P-A-[KQ]Add
    BLAST

    Sequence similaritiesi

    Belongs to the ribosomal protein L29e family.Curated

    Keywords - Domaini

    Repeat

    Phylogenomic databases

    eggNOGiNOG249125.
    HOGENOMiHOG000139149.
    HOVERGENiHBG000386.
    InParanoidiP47915.
    KOiK02905.
    OMAiCRPKSQA.
    OrthoDBiEOG7JT70C.
    PhylomeDBiP47915.
    TreeFamiTF313858.

    Family and domain databases

    InterProiIPR002673. Ribosomal_L29e.
    [Graphical view]
    PANTHERiPTHR12884. PTHR12884. 1 hit.
    PfamiPF01779. Ribosomal_L29e. 1 hit.
    [Graphical view]
    ProDomiPD010314. Ribosomal_L29e. 1 hit.
    [Graphical view] [Entries sharing at least one domain]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    P47915-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAKSKNHTTH NQSRKWHRNG IKKPRSQRYE SLKGVDPKFL RNMRFAKKHN    50
    KKGLKKMQAN NAKAVSARAE AIKALVKPQA IKPKMPKGPK LKRLAFIAHP 100
    KLGKRIRSYM AKGQRLCQPK PKVQTKAGAK APAKAQASAP AQAPKGAQAP 150
    KGAQAPVKAP 160
    Length:160
    Mass (Da):17,587
    Last modified:January 23, 2007 - v2
    Checksum:i420E1A9ED9709C01
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    L08651 mRNA. Translation: AAA16857.1.
    BC002062 mRNA. Translation: AAH02062.1.
    BC081467 mRNA. Translation: AAH81467.1.
    BC082292 mRNA. Translation: AAH82292.1.
    BC086897 mRNA. Translation: AAH86897.1.
    BC086898 mRNA. Translation: AAH86898.1.
    CCDSiCCDS23476.1.
    PIRiJC2012.
    RefSeqiNP_033108.1. NM_009082.2.
    XP_006511722.1. XM_006511659.1.
    XP_006511723.1. XM_006511660.1.
    XP_990228.1. XM_985134.6.
    UniGeneiMm.288696.
    Mm.359377.
    Mm.431965.

    Genome annotation databases

    EnsembliENSMUST00000059802; ENSMUSP00000080203; ENSMUSG00000048758.
    ENSMUST00000150576; ENSMUSP00000117834; ENSMUSG00000048758.
    GeneIDi19944.
    666642.
    KEGGimmu:19944.
    mmu:666642.
    UCSCiuc007avm.2. mouse.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    L08651 mRNA. Translation: AAA16857.1 .
    BC002062 mRNA. Translation: AAH02062.1 .
    BC081467 mRNA. Translation: AAH81467.1 .
    BC082292 mRNA. Translation: AAH82292.1 .
    BC086897 mRNA. Translation: AAH86897.1 .
    BC086898 mRNA. Translation: AAH86898.1 .
    CCDSi CCDS23476.1.
    PIRi JC2012.
    RefSeqi NP_033108.1. NM_009082.2.
    XP_006511722.1. XM_006511659.1.
    XP_006511723.1. XM_006511660.1.
    XP_990228.1. XM_985134.6.
    UniGenei Mm.288696.
    Mm.359377.
    Mm.431965.

    3D structure databases

    ProteinModelPortali P47915.
    SMRi P47915. Positions 2-79.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 202976. 1 interaction.
    IntActi P47915. 5 interactions.
    MINTi MINT-1581728.
    STRINGi 10090.ENSMUSP00000080203.

    PTM databases

    PhosphoSitei P47915.

    Proteomic databases

    PaxDbi P47915.
    PRIDEi P47915.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSMUST00000059802 ; ENSMUSP00000080203 ; ENSMUSG00000048758 .
    ENSMUST00000150576 ; ENSMUSP00000117834 ; ENSMUSG00000048758 .
    GeneIDi 19944.
    666642.
    KEGGi mmu:19944.
    mmu:666642.
    UCSCi uc007avm.2. mouse.

    Organism-specific databases

    CTDi 6159.
    MGIi MGI:99687. Rpl29.

    Phylogenomic databases

    eggNOGi NOG249125.
    HOGENOMi HOG000139149.
    HOVERGENi HBG000386.
    InParanoidi P47915.
    KOi K02905.
    OMAi CRPKSQA.
    OrthoDBi EOG7JT70C.
    PhylomeDBi P47915.
    TreeFami TF313858.

    Enzyme and pathway databases

    Reactomei REACT_196445. SRP-dependent cotranslational protein targeting to membrane.
    REACT_198524. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
    REACT_198528. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

    Miscellaneous databases

    NextBioi 297465.
    PROi P47915.
    SOURCEi Search...

    Gene expression databases

    Bgeei P47915.
    CleanExi MM_RPL29.
    Genevestigatori P47915.

    Family and domain databases

    InterProi IPR002673. Ribosomal_L29e.
    [Graphical view ]
    PANTHERi PTHR12884. PTHR12884. 1 hit.
    Pfami PF01779. Ribosomal_L29e. 1 hit.
    [Graphical view ]
    ProDomi PD010314. Ribosomal_L29e. 1 hit.
    [Graphical view ] [Entries sharing at least one domain ]
    ProtoNeti Search...

    Publicationsi

    1. "Cloning a pseudogene and cDNA encoding a 17-kDa ribosomal protein from mouse: structure and regulation of expression."
      Rudert F., Garnier J.-M., Schuhbaur B.
      Gene 133:249-254(1993) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: C57BL/6, Czech II and FVB/N-3.
      Tissue: Brain, Kidney and Mammary gland.

    Entry informationi

    Entry nameiRL29_MOUSE
    AccessioniPrimary (citable) accession number: P47915
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 1, 1996
    Last sequence update: January 23, 2007
    Last modified: October 1, 2014
    This is version 104 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. MGD cross-references
      Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3