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P47915

- RL29_MOUSE

UniProt

P47915 - RL29_MOUSE

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Protein

60S ribosomal protein L29

Gene

Rpl29

Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiREACT_196445. SRP-dependent cotranslational protein targeting to membrane.
REACT_198524. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_198528. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
REACT_231519. Eukaryotic Translation Termination.
REACT_249044. Formation of a pool of free 40S subunits.
REACT_253640. Peptide chain elongation.
REACT_259469. L13a-mediated translational silencing of Ceruloplasmin expression.
REACT_262078. GTP hydrolysis and joining of the 60S ribosomal subunit.

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L29
Gene namesi
Name:Rpl29
Synonyms:Rpl43
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 9

Organism-specific databases

MGIiMGI:99687. Rpl29.

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11RemovedBy similarity
Chaini2 – 16015960S ribosomal protein L29PRO_0000219136Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei5 – 51N6-methyllysineBy similarity
Modified residuei33 – 331N6-acetyllysineBy similarity
Cross-linki56 – 56Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)By similarity
Cross-linki73 – 73Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)By similarity
Modified residuei138 – 1381PhosphoserineBy similarity

Keywords - PTMi

Acetylation, Isopeptide bond, Methylation, Phosphoprotein, Ubl conjugation

Proteomic databases

MaxQBiP47915.
PaxDbiP47915.
PRIDEiP47915.

PTM databases

PhosphoSiteiP47915.

Expressioni

Gene expression databases

BgeeiP47915.
CleanExiMM_RPL29.
ExpressionAtlasiP47915. baseline.
GenevestigatoriP47915.

Interactioni

Protein-protein interaction databases

BioGridi202976. 1 interaction.
IntActiP47915. 5 interactions.
MINTiMINT-1581728.
STRINGi10090.ENSMUSP00000080203.

Structurei

3D structure databases

ProteinModelPortaliP47915.
SMRiP47915. Positions 2-76.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati127 – 13481
Repeati135 – 14282

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni127 – 142162 X 8 AA tandem repeats of A-X-A-K-A-P-A-[KQ]Add
BLAST

Sequence similaritiesi

Belongs to the ribosomal protein L29e family.Curated

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiNOG249125.
HOGENOMiHOG000139149.
HOVERGENiHBG000386.
InParanoidiP47915.
KOiK02905.
OMAiCRPKSQA.
OrthoDBiEOG7JT70C.
PhylomeDBiP47915.
TreeFamiTF313858.

Family and domain databases

InterProiIPR002673. Ribosomal_L29e.
[Graphical view]
PANTHERiPTHR12884. PTHR12884. 1 hit.
PfamiPF01779. Ribosomal_L29e. 1 hit.
[Graphical view]
ProDomiPD010314. Ribosomal_L29e. 1 hit.
[Graphical view] [Entries sharing at least one domain]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P47915-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAKSKNHTTH NQSRKWHRNG IKKPRSQRYE SLKGVDPKFL RNMRFAKKHN
60 70 80 90 100
KKGLKKMQAN NAKAVSARAE AIKALVKPQA IKPKMPKGPK LKRLAFIAHP
110 120 130 140 150
KLGKRIRSYM AKGQRLCQPK PKVQTKAGAK APAKAQASAP AQAPKGAQAP
160
KGAQAPVKAP
Length:160
Mass (Da):17,587
Last modified:January 23, 2007 - v2
Checksum:i420E1A9ED9709C01
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L08651 mRNA. Translation: AAA16857.1.
BC002062 mRNA. Translation: AAH02062.1.
BC081467 mRNA. Translation: AAH81467.1.
BC082292 mRNA. Translation: AAH82292.1.
BC086897 mRNA. Translation: AAH86897.1.
BC086898 mRNA. Translation: AAH86898.1.
CCDSiCCDS23476.1.
PIRiJC2012.
RefSeqiNP_033108.1. NM_009082.2.
XP_006511722.1. XM_006511659.1.
XP_006511723.1. XM_006511660.1.
XP_990228.1. XM_985134.6.
UniGeneiMm.288696.
Mm.359377.
Mm.431965.

Genome annotation databases

EnsembliENSMUST00000059802; ENSMUSP00000080203; ENSMUSG00000048758.
ENSMUST00000150576; ENSMUSP00000117834; ENSMUSG00000048758.
GeneIDi19944.
666642.
KEGGimmu:19944.
mmu:666642.
UCSCiuc007avm.2. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L08651 mRNA. Translation: AAA16857.1 .
BC002062 mRNA. Translation: AAH02062.1 .
BC081467 mRNA. Translation: AAH81467.1 .
BC082292 mRNA. Translation: AAH82292.1 .
BC086897 mRNA. Translation: AAH86897.1 .
BC086898 mRNA. Translation: AAH86898.1 .
CCDSi CCDS23476.1.
PIRi JC2012.
RefSeqi NP_033108.1. NM_009082.2.
XP_006511722.1. XM_006511659.1.
XP_006511723.1. XM_006511660.1.
XP_990228.1. XM_985134.6.
UniGenei Mm.288696.
Mm.359377.
Mm.431965.

3D structure databases

ProteinModelPortali P47915.
SMRi P47915. Positions 2-76.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 202976. 1 interaction.
IntActi P47915. 5 interactions.
MINTi MINT-1581728.
STRINGi 10090.ENSMUSP00000080203.

PTM databases

PhosphoSitei P47915.

Proteomic databases

MaxQBi P47915.
PaxDbi P47915.
PRIDEi P47915.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000059802 ; ENSMUSP00000080203 ; ENSMUSG00000048758 .
ENSMUST00000150576 ; ENSMUSP00000117834 ; ENSMUSG00000048758 .
GeneIDi 19944.
666642.
KEGGi mmu:19944.
mmu:666642.
UCSCi uc007avm.2. mouse.

Organism-specific databases

CTDi 6159.
MGIi MGI:99687. Rpl29.

Phylogenomic databases

eggNOGi NOG249125.
HOGENOMi HOG000139149.
HOVERGENi HBG000386.
InParanoidi P47915.
KOi K02905.
OMAi CRPKSQA.
OrthoDBi EOG7JT70C.
PhylomeDBi P47915.
TreeFami TF313858.

Enzyme and pathway databases

Reactomei REACT_196445. SRP-dependent cotranslational protein targeting to membrane.
REACT_198524. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
REACT_198528. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
REACT_231519. Eukaryotic Translation Termination.
REACT_249044. Formation of a pool of free 40S subunits.
REACT_253640. Peptide chain elongation.
REACT_259469. L13a-mediated translational silencing of Ceruloplasmin expression.
REACT_262078. GTP hydrolysis and joining of the 60S ribosomal subunit.

Miscellaneous databases

NextBioi 297465.
PROi P47915.
SOURCEi Search...

Gene expression databases

Bgeei P47915.
CleanExi MM_RPL29.
ExpressionAtlasi P47915. baseline.
Genevestigatori P47915.

Family and domain databases

InterProi IPR002673. Ribosomal_L29e.
[Graphical view ]
PANTHERi PTHR12884. PTHR12884. 1 hit.
Pfami PF01779. Ribosomal_L29e. 1 hit.
[Graphical view ]
ProDomi PD010314. Ribosomal_L29e. 1 hit.
[Graphical view ] [Entries sharing at least one domain ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Cloning a pseudogene and cDNA encoding a 17-kDa ribosomal protein from mouse: structure and regulation of expression."
    Rudert F., Garnier J.-M., Schuhbaur B.
    Gene 133:249-254(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6, Czech II and FVB/N-3.
    Tissue: Brain, Kidney and Mammary gland.

Entry informationi

Entry nameiRL29_MOUSE
AccessioniPrimary (citable) accession number: P47915
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: January 23, 2007
Last modified: November 26, 2014
This is version 106 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3