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P47853

- PGS1_RAT

UniProt

P47853 - PGS1_RAT

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Protein

Biglycan

Gene

Bgn

Organism
Rattus norvegicus (Rat)
Status
Reviewed - Annotation score: 4 out of 5- Experimental evidence at transcript leveli

Functioni

May be involved in collagen fiber assembly.By similarity

GO - Molecular functioni

  1. extracellular matrix binding Source: Ensembl
  2. glycosaminoglycan binding Source: Ensembl

GO - Biological processi

  1. blood vessel remodeling Source: RGD
  2. peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan Source: Ensembl
Complete GO annotation...

Enzyme and pathway databases

ReactomeiREACT_198577. CS/DS degradation.
REACT_198757. ECM proteoglycans.
REACT_198784. A tetrasaccharide linker sequence is required for GAG synthesis.
REACT_198797. Chondroitin sulfate biosynthesis.
REACT_198808. Dermatan sulfate biosynthesis.
REACT_268336. Defective CHST3 causes SEDCJD.
REACT_268544. Defective B3GAT3 causes JDSSDHD.
REACT_268809. Defective CHST14 causes EDS, musculocontractural type.
REACT_270068. Defective CHSY1 causes TPBS.
REACT_270715. Defective B4GALT7 causes EDS, progeroid type.

Names & Taxonomyi

Protein namesi
Recommended name:
Biglycan
Alternative name(s):
Bone/cartilage proteoglycan I
PG-S1
Gene namesi
Name:Bgn
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 1

Organism-specific databases

RGDi2207. Bgn.

Subcellular locationi

GO - Cellular componenti

  1. cell surface Source: Ensembl
  2. extracellular vesicular exosome Source: Ensembl
  3. proteinaceous extracellular matrix Source: UniProtKB-KW
  4. sarcolemma Source: Ensembl
  5. transport vesicle Source: Ensembl
Complete GO annotation...

Keywords - Cellular componenti

Extracellular matrix, Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 1919Sequence AnalysisAdd
BLAST
Propeptidei20 – 3718PRO_0000032697Add
BLAST
Chaini38 – 369332BiglycanPRO_0000032698Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi42 – 421O-linked (Xyl...) (glycosaminoglycan)By similarity
Glycosylationi48 – 481O-linked (Xyl...) (glycosaminoglycan)By similarity
Disulfide bondi64 ↔ 70By similarity
Disulfide bondi68 ↔ 77By similarity
Glycosylationi271 – 2711N-linked (GlcNAc...)Sequence Analysis
Glycosylationi312 – 3121N-linked (GlcNAc...)Sequence Analysis
Disulfide bondi322 ↔ 355By similarity

Post-translational modificationi

The two attached glycosaminoglycan chains can be either chondroitin sulfate or dermatan sulfate.By similarity

Keywords - PTMi

Disulfide bond, Glycoprotein, Proteoglycan

Proteomic databases

PaxDbiP47853.
PRIDEiP47853.

Expressioni

Tissue specificityi

Found in several connective tissues, especially in articular cartilages.

Gene expression databases

GenevestigatoriP47853.

Interactioni

Subunit structurei

Homodimer. Forms a ternary complex with MFAP2 and ELN (By similarity).By similarity

Protein-protein interaction databases

IntActiP47853. 2 interactions.
STRINGi10116.ENSRNOP00000023920.

Structurei

3D structure databases

ProteinModelPortaliP47853.
SMRiP47853. Positions 62-366.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati83 – 10321LRR 1Add
BLAST
Repeati104 – 12724LRR 2Add
BLAST
Repeati128 – 15124LRR 3Add
BLAST
Repeati152 – 17221LRR 4Add
BLAST
Repeati173 – 19624LRR 5Add
BLAST
Repeati197 – 22125LRR 6Add
BLAST
Repeati222 – 24221LRR 7Add
BLAST
Repeati243 – 26624LRR 8Add
BLAST
Repeati267 – 29024LRR 9Add
BLAST
Repeati291 – 31323LRR 10Add
BLAST
Repeati314 – 34330LRR 11Add
BLAST
Repeati344 – 36926LRR 12Add
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi64 – 7714Cys-richAdd
BLAST

Sequence similaritiesi

Contains 12 LRR (leucine-rich) repeats.Curated

Keywords - Domaini

Leucine-rich repeat, Repeat, Signal

Phylogenomic databases

eggNOGiCOG4886.
GeneTreeiENSGT00760000118969.
HOGENOMiHOG000261690.
HOVERGENiHBG016052.
InParanoidiP47853.
KOiK08118.
OMAiIQFGNYK.
OrthoDBiEOG76739V.
PhylomeDBiP47853.
TreeFamiTF334562.

Family and domain databases

InterProiIPR028547. Biglycan.
IPR001611. Leu-rich_rpt.
IPR000372. LRR-contain_N.
IPR016352. SLRP_I_decor/aspor/byglycan.
[Graphical view]
PANTHERiPTHR24369:SF6. PTHR24369:SF6. 1 hit.
PfamiPF13855. LRR_8. 3 hits.
PF01462. LRRNT. 1 hit.
[Graphical view]
PIRSFiPIRSF002490. SLRP_I. 1 hit.
SMARTiSM00013. LRRNT. 1 hit.
[Graphical view]
PROSITEiPS51450. LRR. 8 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P47853-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MRPLWLLTLL LALSQALPFE QKGFWDFTLD DGLLMMNDEE ASGSDTTSGV
60 70 80 90 100
PDLDSLTPTF SAMCPFGCHC HLRVVQCSDL GLKTVPKEIS PDTTLLDLQN
110 120 130 140 150
NDISELRKDD FKGLQHLYAL VLVNNKISKI HEKAFSPLRK LQKLYISKNH
160 170 180 190 200
LVEIPPNLPS SLVELRIHDN RIRKVPKGVF SGLRNMNCIE MGGNPLENSG
210 220 230 240 250
FEPGAFDGLK LNYLRISEAK LTGIPKDLPE TLNELHLDHN KIQAIELEDL
260 270 280 290 300
LRYSKLYRLG LGHNQIRMIE NGSLSFLPTL RELHLDNNKL SRVPAGLPDL
310 320 330 340 350
KLLQVVYLHS NNITKVGIND FCPMGFGVKR AYYNGISLFN NPVPYWEVQP
360
ATFRCVTDRL AIQFGNYKK
Length:369
Mass (Da):41,706
Last modified:February 1, 1996 - v1
Checksum:i319DC15117F2C604
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U17834 mRNA. Translation: AAA58797.1.
BC072480 mRNA. Translation: AAH72480.1.
PIRiPT0077.
S32793.
RefSeqiNP_058783.1. NM_017087.1.
UniGeneiRn.783.

Genome annotation databases

EnsembliENSRNOT00000023920; ENSRNOP00000023920; ENSRNOG00000017440.
GeneIDi25181.
KEGGirno:25181.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U17834 mRNA. Translation: AAA58797.1 .
BC072480 mRNA. Translation: AAH72480.1 .
PIRi PT0077.
S32793.
RefSeqi NP_058783.1. NM_017087.1.
UniGenei Rn.783.

3D structure databases

ProteinModelPortali P47853.
SMRi P47853. Positions 62-366.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

IntActi P47853. 2 interactions.
STRINGi 10116.ENSRNOP00000023920.

Proteomic databases

PaxDbi P47853.
PRIDEi P47853.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSRNOT00000023920 ; ENSRNOP00000023920 ; ENSRNOG00000017440 .
GeneIDi 25181.
KEGGi rno:25181.

Organism-specific databases

CTDi 633.
RGDi 2207. Bgn.

Phylogenomic databases

eggNOGi COG4886.
GeneTreei ENSGT00760000118969.
HOGENOMi HOG000261690.
HOVERGENi HBG016052.
InParanoidi P47853.
KOi K08118.
OMAi IQFGNYK.
OrthoDBi EOG76739V.
PhylomeDBi P47853.
TreeFami TF334562.

Enzyme and pathway databases

Reactomei REACT_198577. CS/DS degradation.
REACT_198757. ECM proteoglycans.
REACT_198784. A tetrasaccharide linker sequence is required for GAG synthesis.
REACT_198797. Chondroitin sulfate biosynthesis.
REACT_198808. Dermatan sulfate biosynthesis.
REACT_268336. Defective CHST3 causes SEDCJD.
REACT_268544. Defective B3GAT3 causes JDSSDHD.
REACT_268809. Defective CHST14 causes EDS, musculocontractural type.
REACT_270068. Defective CHSY1 causes TPBS.
REACT_270715. Defective B4GALT7 causes EDS, progeroid type.

Miscellaneous databases

NextBioi 605671.
PROi P47853.

Gene expression databases

Genevestigatori P47853.

Family and domain databases

InterProi IPR028547. Biglycan.
IPR001611. Leu-rich_rpt.
IPR000372. LRR-contain_N.
IPR016352. SLRP_I_decor/aspor/byglycan.
[Graphical view ]
PANTHERi PTHR24369:SF6. PTHR24369:SF6. 1 hit.
Pfami PF13855. LRR_8. 3 hits.
PF01462. LRRNT. 1 hit.
[Graphical view ]
PIRSFi PIRSF002490. SLRP_I. 1 hit.
SMARTi SM00013. LRRNT. 1 hit.
[Graphical view ]
PROSITEi PS51450. LRR. 8 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Vascular smooth muscle biglycan represents a highly conserved proteoglycan within the arterial wall."
    Dreher K.L., Asundi V.K., Matzura D., Cowan K.
    Eur. J. Cell Biol. 53:296-304(1990) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Tissue: Vascular smooth muscle.
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Heart.

Entry informationi

Entry nameiPGS1_RAT
AccessioniPrimary (citable) accession number: P47853
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: February 1, 1996
Last modified: November 26, 2014
This is version 111 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3